Wall clock time and date at job start Mon Mar 30 2020 02:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39870 * 125.90518 * 2 1 4 4 C 1.35307 * 107.92512 * 179.71986 * 3 2 1 5 5 N 1.34950 * 107.74762 * 0.41723 * 4 3 2 6 6 C 1.46494 * 126.03826 * 179.84203 * 5 4 3 7 7 C 1.50700 * 109.47284 * 124.72167 * 6 5 4 8 8 O 1.21291 * 119.99869 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.37094 * 119.99672 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00202 * 222.84039 * 10 9 7 12 12 C 1.38953 * 120.00136 * 42.84186 * 10 9 7 13 13 N 1.31410 * 120.00166 * 19.08671 * 12 10 9 14 14 Si 1.86797 * 119.99857 * 199.08607 * 12 10 9 15 15 H 1.48506 * 109.47412 * 60.00159 * 14 12 10 16 16 H 1.48500 * 109.47332 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47689 * 299.99854 * 14 12 10 18 18 C 1.46493 * 120.00169 * 359.97438 * 9 7 6 19 19 C 1.54261 * 110.03456 * 239.57541 * 18 9 7 20 20 C 1.54959 * 104.16391 * 217.13636 * 19 18 9 21 21 C 1.54894 * 102.77446 * 37.88732 * 20 19 18 22 22 C 1.53878 * 110.03427 * 122.35677 * 18 9 7 23 23 N 1.30841 * 125.89848 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.46952 * 270.00082 * 1 2 3 25 25 H 1.08996 * 109.47064 * 30.00130 * 1 2 3 26 26 H 1.09007 * 109.47067 * 150.00109 * 1 2 3 27 27 H 1.08006 * 126.03351 * 359.97438 * 3 2 1 28 28 H 1.08001 * 126.12981 * 180.27349 * 4 3 2 29 29 H 1.09000 * 109.47381 * 4.71976 * 6 5 4 30 30 H 1.09002 * 109.47225 * 244.71879 * 6 5 4 31 31 H 0.96999 * 119.99957 * 174.71629 * 13 12 10 32 32 H 1.09001 * 110.01764 * 0.96951 * 18 9 7 33 33 H 1.09005 * 110.48468 * 335.78122 * 19 18 9 34 34 H 1.09006 * 110.48890 * 98.42202 * 19 18 9 35 35 H 1.09000 * 110.72317 * 279.57462 * 20 19 18 36 36 H 1.09005 * 110.92612 * 156.29333 * 20 19 18 37 37 H 1.09002 * 110.48248 * 203.40523 * 21 20 19 38 38 H 1.08997 * 110.59978 * 80.82164 * 21 20 19 39 39 H 1.08995 * 110.03374 * 238.57210 * 22 18 9 40 40 H 1.08999 * 110.02612 * 359.95260 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6142 0.7153 0.0063 5 7 3.6088 -0.6342 0.0008 6 6 4.7899 -1.5008 0.0013 7 6 4.7121 -2.4553 1.1650 8 8 3.7636 -2.4151 1.9199 9 7 5.6966 -3.3534 1.3668 10 6 5.6260 -4.2213 2.4258 11 1 6.5053 -4.4203 3.0204 12 6 4.4232 -4.8449 2.7340 13 7 3.4694 -4.9148 1.8328 14 14 4.1620 -5.5840 4.4296 15 1 4.2885 -4.5203 5.4582 16 1 2.8061 -6.1851 4.5041 17 1 5.1834 -6.6337 4.6749 18 6 6.8419 -3.4023 0.4548 19 6 6.9368 -4.7957 -0.2002 20 6 8.4593 -5.0698 -0.2896 21 6 8.9939 -4.4686 1.0340 22 6 8.1494 -3.1940 1.2388 23 7 2.2742 -1.0599 0.0005 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8901 -0.5138 27 1 1.9924 2.1598 -0.0004 28 1 4.4891 1.3484 0.0121 29 1 5.6884 -0.8904 0.0915 30 1 4.8264 -2.0659 -0.9301 31 1 2.6603 -5.4158 2.0207 32 1 6.7406 -2.6351 -0.3128 33 1 6.4506 -5.5449 0.4248 34 1 6.4919 -4.7808 -1.1952 35 1 8.8934 -4.5587 -1.1490 36 1 8.6602 -6.1401 -0.3366 37 1 10.0498 -4.2154 0.9389 38 1 8.8421 -5.1636 1.8598 39 1 8.6830 -2.3262 0.8512 40 1 7.9316 -3.0557 2.2978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449951585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:50 Heat of formation + Delta-G solvation = 54.293367 kcal Electronic energy + Delta-G solvation = -22288.077266 eV Core-core repulsion = 19105.106012 eV Total energy + Delta-G solvation = -3182.971253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.62311 -38.81077 -36.69090 -33.56968 -32.98293 -31.56474 -29.83124 -28.91664 -28.10494 -26.90392 -26.04725 -23.91534 -20.75587 -20.13735 -20.06666 -19.49552 -18.92846 -16.64527 -16.30217 -15.96386 -14.91423 -14.69035 -14.54650 -14.15599 -13.81926 -13.54783 -13.36017 -12.90838 -12.78345 -12.55953 -12.47699 -11.94003 -11.71696 -11.64670 -11.30890 -11.02556 -10.83522 -10.72352 -10.66459 -10.51935 -10.49113 -10.21859 -10.05973 -9.86584 -9.84618 -8.81226 -8.65262 -8.19492 -7.81743 -7.06081 -6.05582 -3.80160 2.48281 3.06377 3.32219 3.32678 3.40653 3.43493 4.09487 4.37022 4.81498 5.08670 5.15866 5.17851 5.19937 5.30352 5.42898 5.50451 5.64559 5.76377 5.82224 5.82969 5.96471 6.01121 6.03515 6.11813 6.18047 6.19070 6.24634 6.28815 6.39647 6.41760 6.56187 6.57448 6.76551 6.90145 7.16958 7.22196 7.53373 7.67900 8.30437 8.38220 9.07068 9.20079 9.68549 10.29473 11.02482 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.006798 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.188937 B = 4118.055565 C = 5426.136942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.042 3.958 3 C -0.279 4.279 4 C 0.043 3.957 5 N -0.343 5.343 6 C 0.113 3.887 7 C 0.460 3.540 8 O -0.504 6.504 9 N -0.445 5.445 10 C -0.346 4.346 11 H 0.078 0.922 12 C 0.073 3.927 13 N -0.821 5.821 14 Si 0.908 3.092 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.279 1.279 18 C 0.128 3.872 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.131 4.131 23 N -0.241 5.241 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.139 0.861 28 H 0.166 0.834 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.264 0.736 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 7.007 -6.231 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.125 4.125 3 C -0.309 4.309 4 C -0.104 4.104 5 N -0.125 5.125 6 C -0.012 4.012 7 C 0.245 3.755 8 O -0.378 6.378 9 N -0.169 5.169 10 C -0.472 4.472 11 H 0.096 0.904 12 C -0.138 4.138 13 N -0.454 5.454 14 Si 0.735 3.265 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.205 1.205 18 C 0.023 3.977 19 C -0.163 4.163 20 C -0.161 4.161 21 C -0.155 4.155 22 C -0.169 4.169 23 N -0.064 5.064 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.157 0.843 28 H 0.183 0.817 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.965 5.657 -5.848 9.532 hybrid contribution 0.044 0.499 0.713 0.871 sum 5.009 6.156 -5.135 9.453 Atomic orbital electron populations 1.20043 0.87460 1.02360 1.02453 1.22331 0.96828 0.91120 1.02190 1.21190 0.91725 0.99185 1.18785 1.22408 0.99404 0.85092 1.03453 1.48166 1.05329 1.03917 1.55052 1.21715 0.83806 0.93879 1.01818 1.19713 0.86183 0.82677 0.86950 1.90607 1.31249 1.69585 1.46375 1.43315 1.18343 1.30101 1.25133 1.18715 0.96942 1.24400 1.07176 0.90402 1.25214 0.96109 0.95101 0.97411 1.69822 1.07002 1.35392 1.33175 0.86353 0.77133 0.78578 0.84387 1.20156 1.21328 1.20498 1.21723 0.88184 0.96509 0.91285 1.22660 0.94755 0.98865 1.00059 1.22453 0.96701 0.99857 0.97047 1.22253 0.97766 0.97521 0.97921 1.22459 0.95603 0.96801 1.02086 1.77639 0.86073 1.21784 1.20896 0.91103 0.91209 0.91358 0.84336 0.81677 0.88028 0.88921 0.92567 0.92076 0.88935 0.92975 0.92528 0.92290 0.92887 0.91540 0.92910 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.45 36.00 0.38 -0.57 16 2 C 0.04 0.81 7.22 -82.41 -0.59 0.21 16 3 C -0.28 -4.62 10.74 -40.02 -0.43 -5.05 16 4 C 0.04 0.71 11.45 -17.23 -0.20 0.52 16 5 N -0.34 -7.06 3.40 -62.55 -0.21 -7.27 16 6 C 0.11 2.22 5.31 -5.20 -0.03 2.19 16 7 C 0.46 11.58 7.00 -10.98 -0.08 11.50 16 8 O -0.50 -15.19 13.36 5.55 0.07 -15.11 16 9 N -0.45 -10.61 2.46 -106.55 -0.26 -10.87 16 10 C -0.35 -9.14 7.45 -14.93 -0.11 -9.25 16 11 H 0.08 1.99 7.08 -52.49 -0.37 1.62 16 12 C 0.07 2.05 4.35 -17.47 -0.08 1.98 16 13 N -0.82 -24.51 11.67 55.50 0.65 -23.86 16 14 Si 0.91 22.22 29.60 -169.99 -5.03 17.19 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.13 2.37 3.20 -66.82 -0.21 2.16 16 19 C -0.13 -2.25 6.42 -25.04 -0.16 -2.41 16 20 C -0.12 -1.76 6.91 -24.70 -0.17 -1.93 16 21 C -0.12 -1.70 6.83 -25.07 -0.17 -1.87 16 22 C -0.13 -2.12 6.19 -25.61 -0.16 -2.28 16 23 N -0.24 -5.58 11.64 33.67 0.39 -5.19 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 27 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 28 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 29 H 0.10 1.55 7.71 -51.93 -0.40 1.15 16 30 H 0.09 1.71 7.81 -51.93 -0.41 1.30 16 31 H 0.26 7.72 8.32 -40.82 -0.34 7.38 16 32 H 0.06 0.99 5.82 -51.93 -0.30 0.68 16 33 H 0.09 2.02 7.10 -51.93 -0.37 1.65 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.41 6.86 -51.93 -0.36 1.05 16 LS Contribution 327.05 15.07 4.93 4.93 Total: -1.00 -35.15 327.05 -7.47 -42.62 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.99 Total: 2.39 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.01 Total: -4.81 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.56 Total: -47.19 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.07 Total: -15.11 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.15 -7.47 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449951585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.909 kcal (2) G-P(sol) polarization free energy of solvation -35.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds