Wall clock time and date at job start Mon Mar 30 2020 02:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39870 * 125.90518 * 2 1 4 4 C 1.35307 * 107.92512 * 179.71986 * 3 2 1 5 5 N 1.34950 * 107.74762 * 0.41723 * 4 3 2 6 6 C 1.46494 * 126.03826 * 179.84203 * 5 4 3 7 7 C 1.50700 * 109.47284 * 124.72167 * 6 5 4 8 8 O 1.21291 * 119.99869 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00080 * 179.97438 * 7 6 5 10 10 C 1.37094 * 119.99672 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00202 * 222.84039 * 10 9 7 12 12 C 1.38953 * 120.00136 * 42.84186 * 10 9 7 13 13 N 1.31410 * 120.00166 * 19.08671 * 12 10 9 14 14 Si 1.86797 * 119.99857 * 199.08607 * 12 10 9 15 15 H 1.48506 * 109.47412 * 60.00159 * 14 12 10 16 16 H 1.48500 * 109.47332 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47689 * 299.99854 * 14 12 10 18 18 C 1.46493 * 120.00169 * 359.97438 * 9 7 6 19 19 C 1.54261 * 110.03456 * 239.57541 * 18 9 7 20 20 C 1.54959 * 104.16391 * 217.13636 * 19 18 9 21 21 C 1.54894 * 102.77446 * 37.88732 * 20 19 18 22 22 C 1.53878 * 110.03427 * 122.35677 * 18 9 7 23 23 N 1.30841 * 125.89848 * 179.97438 * 2 1 3 24 24 H 1.08997 * 109.46952 * 270.00082 * 1 2 3 25 25 H 1.08996 * 109.47064 * 30.00130 * 1 2 3 26 26 H 1.09007 * 109.47067 * 150.00109 * 1 2 3 27 27 H 1.08006 * 126.03351 * 359.97438 * 3 2 1 28 28 H 1.08001 * 126.12981 * 180.27349 * 4 3 2 29 29 H 1.09000 * 109.47381 * 4.71976 * 6 5 4 30 30 H 1.09002 * 109.47225 * 244.71879 * 6 5 4 31 31 H 0.96999 * 119.99957 * 174.71629 * 13 12 10 32 32 H 1.09001 * 110.01764 * 0.96951 * 18 9 7 33 33 H 1.09005 * 110.48468 * 335.78122 * 19 18 9 34 34 H 1.09006 * 110.48890 * 98.42202 * 19 18 9 35 35 H 1.09000 * 110.72317 * 279.57462 * 20 19 18 36 36 H 1.09005 * 110.92612 * 156.29333 * 20 19 18 37 37 H 1.09002 * 110.48248 * 203.40523 * 21 20 19 38 38 H 1.08997 * 110.59978 * 80.82164 * 21 20 19 39 39 H 1.08995 * 110.03374 * 238.57210 * 22 18 9 40 40 H 1.08999 * 110.02612 * 359.95260 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1329 0.0000 4 6 3.6142 0.7153 0.0063 5 7 3.6088 -0.6342 0.0008 6 6 4.7899 -1.5008 0.0013 7 6 4.7121 -2.4553 1.1650 8 8 3.7636 -2.4151 1.9199 9 7 5.6966 -3.3534 1.3668 10 6 5.6260 -4.2213 2.4258 11 1 6.5053 -4.4203 3.0204 12 6 4.4232 -4.8449 2.7340 13 7 3.4694 -4.9148 1.8328 14 14 4.1620 -5.5840 4.4296 15 1 4.2885 -4.5203 5.4582 16 1 2.8061 -6.1851 4.5041 17 1 5.1834 -6.6337 4.6749 18 6 6.8419 -3.4023 0.4548 19 6 6.9368 -4.7957 -0.2002 20 6 8.4593 -5.0698 -0.2896 21 6 8.9939 -4.4686 1.0340 22 6 8.1494 -3.1940 1.2388 23 7 2.2742 -1.0599 0.0005 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8901 -0.5138 27 1 1.9924 2.1598 -0.0004 28 1 4.4891 1.3484 0.0121 29 1 5.6884 -0.8904 0.0915 30 1 4.8264 -2.0659 -0.9301 31 1 2.6603 -5.4158 2.0207 32 1 6.7406 -2.6351 -0.3128 33 1 6.4506 -5.5449 0.4248 34 1 6.4919 -4.7808 -1.1952 35 1 8.8934 -4.5587 -1.1490 36 1 8.6602 -6.1401 -0.3366 37 1 10.0498 -4.2154 0.9389 38 1 8.8421 -5.1636 1.8598 39 1 8.6830 -2.3262 0.8512 40 1 7.9316 -3.0557 2.2978 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449951585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:49 Heat of formation + Delta-G solvation = 31.309874 kcal Electronic energy + Delta-G solvation = -22289.073905 eV Core-core repulsion = 19105.106012 eV Total energy + Delta-G solvation = -3183.967892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.01247 -40.48310 -38.28718 -35.29749 -34.60025 -33.45853 -31.21650 -30.32294 -29.41487 -28.44039 -27.60781 -25.69316 -22.18983 -21.64759 -21.36145 -21.01475 -20.46542 -18.43040 -17.75899 -17.66078 -16.67637 -16.20748 -16.05300 -15.79557 -15.32994 -15.00457 -14.89784 -14.33802 -14.11762 -14.07026 -13.78330 -13.43275 -13.33301 -13.01652 -12.85655 -12.83185 -12.55486 -12.50143 -12.25140 -12.11390 -11.81658 -11.76188 -11.36208 -11.30398 -11.24143 -10.74731 -10.31605 -9.86604 -9.34089 -9.01410 -8.16788 -5.90840 1.12585 1.32022 1.41025 1.43216 1.71233 2.01109 2.22412 2.45761 3.09595 3.26277 3.74204 3.88043 3.92991 4.01101 4.06377 4.13274 4.27954 4.34103 4.50400 4.57776 4.72144 4.81516 4.84200 4.85586 4.86837 4.97001 4.98999 5.04488 5.14727 5.20621 5.31429 5.32401 5.44471 5.56888 5.59751 5.70140 5.89716 6.20319 6.30273 7.00537 7.06404 7.26805 7.72985 8.38604 8.90967 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.006798 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.188937 B = 4118.055565 C = 5426.136942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.031 3.969 3 C -0.283 4.283 4 C 0.048 3.952 5 N -0.364 5.364 6 C 0.123 3.877 7 C 0.445 3.555 8 O -0.566 6.566 9 N -0.456 5.456 10 C -0.341 4.341 11 H 0.081 0.919 12 C 0.021 3.979 13 N -0.862 5.862 14 Si 0.959 3.041 15 H -0.285 1.285 16 H -0.295 1.295 17 H -0.255 1.255 18 C 0.118 3.882 19 C -0.127 4.127 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.126 4.126 23 N -0.321 5.321 24 H 0.071 0.929 25 H 0.107 0.893 26 H 0.058 0.942 27 H 0.175 0.825 28 H 0.215 0.785 29 H 0.151 0.849 30 H 0.100 0.900 31 H 0.253 0.747 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 9.220 -7.412 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.136 4.136 3 C -0.312 4.312 4 C -0.097 4.097 5 N -0.145 5.145 6 C -0.002 4.002 7 C 0.231 3.769 8 O -0.445 6.445 9 N -0.178 5.178 10 C -0.469 4.469 11 H 0.098 0.902 12 C -0.185 4.185 13 N -0.497 5.497 14 Si 0.785 3.215 15 H -0.211 1.211 16 H -0.222 1.222 17 H -0.179 1.179 18 C 0.015 3.985 19 C -0.165 4.165 20 C -0.148 4.148 21 C -0.152 4.152 22 C -0.164 4.164 23 N -0.144 5.144 24 H 0.090 0.910 25 H 0.126 0.874 26 H 0.077 0.923 27 H 0.193 0.807 28 H 0.231 0.769 29 H 0.169 0.831 30 H 0.117 0.883 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.616 7.858 -7.044 13.014 hybrid contribution -0.709 -0.099 1.057 1.276 sum 6.907 7.760 -5.987 11.990 Atomic orbital electron populations 1.20188 0.85360 1.03786 1.02896 1.23094 0.98505 0.91429 1.00561 1.21683 0.91390 1.00147 1.18007 1.23279 1.01358 0.83924 1.01113 1.48255 1.04613 1.05310 1.56368 1.21666 0.85697 0.93748 0.99073 1.20694 0.85185 0.83153 0.87844 1.90564 1.33501 1.71483 1.48915 1.43580 1.19585 1.29232 1.25435 1.18928 0.96485 1.23441 1.08013 0.90184 1.25955 0.96320 0.96190 1.00075 1.69962 1.07347 1.37563 1.34837 0.85547 0.77140 0.78167 0.80661 1.21100 1.22153 1.17922 1.22101 0.87199 0.97722 0.91505 1.22594 0.97540 0.97316 0.99091 1.22415 0.93385 1.00821 0.98134 1.22252 0.99447 0.96240 0.97258 1.22424 0.94767 0.99172 1.00052 1.77558 0.87996 1.24651 1.24235 0.91030 0.87417 0.92280 0.80719 0.76865 0.83108 0.88253 0.93815 0.88978 0.93723 0.92636 0.89361 0.91660 0.89512 0.93605 0.89205 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.85 10.45 71.23 0.74 -1.11 16 2 C 0.03 1.16 7.22 43.10 0.31 1.48 16 3 C -0.28 -8.66 10.74 21.99 0.24 -8.43 16 4 C 0.05 1.47 11.45 83.54 0.96 2.43 16 5 N -0.36 -14.62 3.40 -351.81 -1.20 -15.82 16 6 C 0.12 4.65 5.31 85.63 0.45 5.10 16 7 C 0.44 22.70 7.00 87.66 0.61 23.31 16 8 O -0.57 -35.52 13.36 -3.06 -0.04 -35.56 16 9 N -0.46 -21.93 2.46 -609.39 -1.50 -23.42 16 10 C -0.34 -18.54 7.45 84.04 0.63 -17.92 16 11 H 0.08 4.20 7.08 -2.91 -0.02 4.18 16 12 C 0.02 1.23 4.35 84.93 0.37 1.60 16 13 N -0.86 -54.40 11.67 21.66 0.25 -54.15 16 14 Si 0.96 47.42 29.60 68.60 2.03 49.45 16 15 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 16 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 17 H -0.25 -11.44 7.11 99.48 0.71 -10.74 16 18 C 0.12 4.19 3.20 45.72 0.15 4.33 16 19 C -0.13 -4.48 6.42 31.69 0.20 -4.27 16 20 C -0.11 -2.81 6.91 31.91 0.22 -2.59 16 21 C -0.11 -2.98 6.83 31.67 0.22 -2.77 16 22 C -0.13 -3.72 6.19 31.32 0.19 -3.52 16 23 N -0.32 -15.19 11.64 -47.39 -0.55 -15.75 16 24 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.21 4.08 8.06 -2.91 -0.02 4.06 16 29 H 0.15 4.01 7.71 -2.39 -0.02 3.99 16 30 H 0.10 3.55 7.81 -2.39 -0.02 3.53 16 31 H 0.25 15.79 8.32 -92.71 -0.77 15.02 16 32 H 0.09 2.66 5.82 -2.39 -0.01 2.64 16 33 H 0.04 2.00 7.10 -2.38 -0.02 1.98 16 34 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.71 6.86 -2.39 -0.02 1.70 16 Total: -1.00 -84.21 327.05 5.31 -78.90 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 1.02 Total: 18.71 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.29 Total: -2.36 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -2.99 Total: -109.14 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.04 Total: -35.56 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -84.21 5.31 -78.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449951585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.205 kcal (2) G-P(sol) polarization free energy of solvation -84.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds