Wall clock time and date at job start Mon Mar 30 2020 01:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38229 * 119.62007 * 2 1 4 4 C 1.38620 * 119.16437 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.78904 * 179.97438 * 4 3 2 6 6 C 1.38675 * 118.42199 * 0.25283 * 4 3 2 7 7 C 1.50695 * 120.41825 * 179.74898 * 6 4 3 8 8 N 1.46497 * 109.47036 * 80.00244 * 7 6 4 9 9 C 1.34781 * 119.99760 * 179.97438 * 8 7 6 10 10 O 1.21586 * 120.00267 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99817 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99944 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47109 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47076 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00302 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00016 * 180.02562 * 14 13 12 17 17 N 1.31526 * 120.00145 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00140 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47163 * 89.99476 * 18 16 14 20 20 H 1.48502 * 109.47169 * 210.00101 * 18 16 14 21 21 H 1.48505 * 109.46530 * 329.99640 * 18 16 14 22 22 C 1.38182 * 119.15849 * 359.52249 * 6 4 3 23 23 N 1.31853 * 119.62130 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.46918 * 90.00425 * 1 2 3 25 25 H 1.09007 * 109.46898 * 209.99449 * 1 2 3 26 26 H 1.08994 * 109.47225 * 329.99812 * 1 2 3 27 27 H 1.08004 * 120.41088 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.47152 * 90.00088 * 5 4 3 29 29 H 1.09001 * 109.46980 * 330.00188 * 5 4 3 30 30 H 1.09004 * 109.47113 * 210.00169 * 5 4 3 31 31 H 1.09007 * 109.47173 * 199.99668 * 7 6 4 32 32 H 1.08997 * 109.47264 * 319.99546 * 7 6 4 33 33 H 0.96993 * 120.00266 * 359.97438 * 8 7 6 34 34 H 0.96999 * 119.99911 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47380 * 300.00157 * 12 11 9 36 36 H 1.09001 * 109.46737 * 60.00464 * 12 11 9 37 37 H 1.08997 * 109.47245 * 300.00383 * 13 12 11 38 38 H 1.08996 * 109.46860 * 60.00171 * 13 12 11 39 39 H 0.97001 * 119.99427 * 179.97438 * 17 16 14 40 40 H 1.08001 * 119.61571 * 180.20704 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5763 1.1906 0.0005 5 6 4.3580 2.4791 0.0000 6 6 4.2266 -0.0342 -0.0043 7 6 5.7322 -0.0986 -0.0096 8 7 6.2350 0.1172 1.3493 9 6 7.5615 0.1022 1.5873 10 8 8.3409 -0.0909 0.6743 11 7 8.0241 0.3012 2.8375 12 6 9.4660 0.2843 3.0963 13 6 9.7200 0.5346 4.5842 14 6 11.2032 0.5179 4.8503 15 1 11.8955 0.3464 4.0393 16 6 11.6764 0.7216 6.1292 17 7 12.9709 0.7066 6.3616 18 14 10.4791 1.0176 7.5321 19 1 10.1035 -0.2818 8.1448 20 1 11.1203 1.8810 8.5563 21 1 9.2617 1.6892 7.0104 22 6 3.4766 -1.1947 0.0006 23 7 2.1587 -1.1462 -0.0005 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6506 2.1373 -0.0004 28 1 4.5461 2.7904 1.0275 29 1 3.7857 3.2510 -0.5146 30 1 5.3076 2.3277 -0.5134 31 1 6.0527 -1.0783 -0.3643 32 1 6.1266 0.6737 -0.6700 33 1 5.6133 0.2708 2.0778 34 1 7.4024 0.4548 3.5659 35 1 9.8741 -0.6867 2.8160 36 1 9.9496 1.0650 2.5092 37 1 9.3119 1.5058 4.8641 38 1 9.2363 -0.2457 5.1716 39 1 13.3038 0.8503 7.2613 40 1 3.9755 -2.1526 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454783378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:30 Heat of formation + Delta-G solvation = -13.277163 kcal Electronic energy + Delta-G solvation = -20373.226912 eV Core-core repulsion = 17187.325580 eV Total energy + Delta-G solvation = -3185.901331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.89411 -39.54682 -35.99413 -34.84819 -33.80155 -32.99475 -32.63249 -30.27645 -28.96225 -27.96285 -25.66225 -24.33770 -23.08670 -21.01441 -20.76324 -20.67590 -18.22146 -17.29102 -16.89380 -16.28413 -15.88784 -15.31780 -15.27083 -14.89968 -14.29767 -13.96412 -13.91776 -13.80998 -13.56961 -13.28760 -13.11881 -12.94809 -12.60720 -12.58802 -12.52748 -12.40537 -11.62847 -11.47662 -11.20221 -10.38783 -10.29312 -10.01316 -9.90797 -9.78023 -9.72914 -9.33316 -9.18952 -9.10276 -8.62475 -8.39494 -6.10715 -4.10668 0.65369 0.89793 2.94948 3.25219 3.32705 3.33889 3.46901 3.49884 3.93614 4.24275 4.32410 4.37796 4.49106 4.57964 4.62575 4.97016 5.03456 5.16240 5.18249 5.20482 5.22186 5.27808 5.44846 5.51597 5.60142 5.73478 5.77889 6.03193 6.08032 6.25031 6.36503 6.46251 6.59220 6.81032 7.02602 7.24811 7.28556 7.65509 7.67798 8.27530 8.45995 8.88235 8.94355 9.49414 11.02324 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.002874 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.188015 B = 9739.652780 C =10115.869363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.133 3.867 3 C -0.178 4.178 4 C -0.018 4.018 5 C -0.123 4.123 6 C -0.167 4.167 7 C 0.187 3.813 8 N -0.749 5.749 9 C 0.700 3.300 10 O -0.594 6.594 11 N -0.742 5.742 12 C 0.148 3.852 13 C -0.022 4.022 14 C -0.522 4.522 15 H 0.076 0.924 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.267 1.267 22 C 0.128 3.872 23 N -0.491 5.491 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.394 0.606 34 H 0.391 0.609 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.021 0.979 38 H 0.017 0.983 39 H 0.265 0.735 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.127 1.775 -12.084 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.004 4.004 3 C -0.198 4.198 4 C -0.026 4.026 5 C -0.179 4.179 6 C -0.170 4.170 7 C 0.063 3.937 8 N -0.406 5.406 9 C 0.400 3.600 10 O -0.472 6.472 11 N -0.395 5.395 12 C 0.026 3.974 13 C -0.059 4.059 14 C -0.560 4.560 15 H 0.094 0.906 16 C -0.133 4.133 17 N -0.537 5.537 18 Si 0.710 3.290 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.029 4.029 23 N -0.201 5.201 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.152 0.848 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.227 0.773 34 H 0.224 0.776 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -25.684 0.843 -12.798 28.708 hybrid contribution -0.593 1.058 1.552 1.969 sum -26.277 1.901 -11.246 28.646 Atomic orbital electron populations 1.20730 0.88800 1.03562 1.03148 1.21356 0.97095 0.88350 0.93611 1.21855 0.94023 0.99396 1.04485 1.20286 0.93746 0.95425 0.93148 1.20926 1.00261 0.93312 1.03417 1.20816 0.96671 0.93943 1.05542 1.19811 0.87171 1.02757 0.83993 1.45147 1.05777 1.79603 1.10101 1.16015 0.81854 0.78277 0.83896 1.90914 1.55535 1.57080 1.43662 1.45527 1.10082 1.76588 1.07334 1.21381 0.76067 1.01473 0.98513 1.19794 0.98671 0.96659 0.90815 1.20919 0.89703 1.49769 0.95632 0.90567 1.25006 0.95067 0.94562 0.98694 1.69911 1.12443 1.49800 1.21534 0.86743 0.81594 0.78530 0.82134 1.20248 1.21302 1.19134 1.22743 0.89093 0.98009 0.93087 1.67584 1.09715 1.29281 1.13518 0.90319 0.90363 0.90671 0.84752 0.90095 0.90973 0.90279 0.90619 0.90501 0.77323 0.77604 0.92129 0.92120 0.96066 0.96484 0.92564 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.17 36.00 0.37 -0.25 16 2 C 0.13 1.16 6.78 -82.59 -0.56 0.60 16 3 C -0.18 -1.38 9.45 -39.44 -0.37 -1.75 16 4 C -0.02 -0.15 5.92 -104.32 -0.62 -0.77 16 5 C -0.12 -0.87 9.68 36.01 0.35 -0.52 16 6 C -0.17 -1.53 5.27 -104.48 -0.55 -2.08 16 7 C 0.19 1.96 5.25 -5.20 -0.03 1.93 16 8 N -0.75 -8.76 5.55 -66.42 -0.37 -9.13 16 9 C 0.70 11.48 8.57 -86.91 -0.74 10.73 16 10 O -0.59 -12.23 16.34 5.29 0.09 -12.15 16 11 N -0.74 -12.20 5.56 -65.22 -0.36 -12.56 16 12 C 0.15 3.04 5.61 -4.04 -0.02 3.02 16 13 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 14 C -0.52 -14.62 9.66 -34.44 -0.33 -14.95 16 15 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 18 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 22 C 0.13 1.23 10.83 -17.55 -0.19 1.04 16 23 N -0.49 -5.14 10.27 -9.47 -0.10 -5.24 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 27 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.08 0.63 6.26 -51.93 -0.33 0.30 16 31 H 0.08 0.82 8.02 -51.93 -0.42 0.41 16 32 H 0.08 0.84 6.53 -51.93 -0.34 0.50 16 33 H 0.39 3.77 8.48 -40.82 -0.35 3.42 16 34 H 0.39 5.33 8.49 -40.82 -0.35 4.99 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 38 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.16 1.28 8.04 -52.49 -0.42 0.86 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -33.92 338.55 -8.38 -42.30 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.92 Total: 3.64 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.92 Total: -1.73 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.06 Total: -53.52 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.92 -8.38 -42.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454783378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.020 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds