Wall clock time and date at job start Mon Mar 30 2020 01:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38229 * 119.62007 * 2 1 4 4 C 1.38620 * 119.16437 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.78904 * 179.97438 * 4 3 2 6 6 C 1.38675 * 118.42199 * 0.25283 * 4 3 2 7 7 C 1.50695 * 120.41825 * 179.74898 * 6 4 3 8 8 N 1.46497 * 109.47036 * 80.00244 * 7 6 4 9 9 C 1.34781 * 119.99760 * 179.97438 * 8 7 6 10 10 O 1.21586 * 120.00267 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99817 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99944 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.47109 * 179.97438 * 12 11 9 14 14 C 1.50693 * 109.47076 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00302 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00016 * 180.02562 * 14 13 12 17 17 N 1.31526 * 120.00145 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00140 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47163 * 89.99476 * 18 16 14 20 20 H 1.48502 * 109.47169 * 210.00101 * 18 16 14 21 21 H 1.48505 * 109.46530 * 329.99640 * 18 16 14 22 22 C 1.38182 * 119.15849 * 359.52249 * 6 4 3 23 23 N 1.31853 * 119.62130 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.46918 * 90.00425 * 1 2 3 25 25 H 1.09007 * 109.46898 * 209.99449 * 1 2 3 26 26 H 1.08994 * 109.47225 * 329.99812 * 1 2 3 27 27 H 1.08004 * 120.41088 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.47152 * 90.00088 * 5 4 3 29 29 H 1.09001 * 109.46980 * 330.00188 * 5 4 3 30 30 H 1.09004 * 109.47113 * 210.00169 * 5 4 3 31 31 H 1.09007 * 109.47173 * 199.99668 * 7 6 4 32 32 H 1.08997 * 109.47264 * 319.99546 * 7 6 4 33 33 H 0.96993 * 120.00266 * 359.97438 * 8 7 6 34 34 H 0.96999 * 119.99911 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.47380 * 300.00157 * 12 11 9 36 36 H 1.09001 * 109.46737 * 60.00464 * 12 11 9 37 37 H 1.08997 * 109.47245 * 300.00383 * 13 12 11 38 38 H 1.08996 * 109.46860 * 60.00171 * 13 12 11 39 39 H 0.97001 * 119.99427 * 179.97438 * 17 16 14 40 40 H 1.08001 * 119.61571 * 180.20704 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5763 1.1906 0.0005 5 6 4.3580 2.4791 0.0000 6 6 4.2266 -0.0342 -0.0043 7 6 5.7322 -0.0986 -0.0096 8 7 6.2350 0.1172 1.3493 9 6 7.5615 0.1022 1.5873 10 8 8.3409 -0.0909 0.6743 11 7 8.0241 0.3012 2.8375 12 6 9.4660 0.2843 3.0963 13 6 9.7200 0.5346 4.5842 14 6 11.2032 0.5179 4.8503 15 1 11.8955 0.3464 4.0393 16 6 11.6764 0.7216 6.1292 17 7 12.9709 0.7066 6.3616 18 14 10.4791 1.0176 7.5321 19 1 10.1035 -0.2818 8.1448 20 1 11.1203 1.8810 8.5563 21 1 9.2617 1.6892 7.0104 22 6 3.4766 -1.1947 0.0006 23 7 2.1587 -1.1462 -0.0005 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5138 27 1 1.6506 2.1373 -0.0004 28 1 4.5461 2.7904 1.0275 29 1 3.7857 3.2510 -0.5146 30 1 5.3076 2.3277 -0.5134 31 1 6.0527 -1.0783 -0.3643 32 1 6.1266 0.6737 -0.6700 33 1 5.6133 0.2708 2.0778 34 1 7.4024 0.4548 3.5659 35 1 9.8741 -0.6867 2.8160 36 1 9.9496 1.0650 2.5092 37 1 9.3119 1.5058 4.8641 38 1 9.2363 -0.2457 5.1716 39 1 13.3038 0.8503 7.2613 40 1 3.9755 -2.1526 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454783378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:29 Heat of formation + Delta-G solvation = -37.951877 kcal Electronic energy + Delta-G solvation = -20374.296887 eV Core-core repulsion = 17187.325580 eV Total energy + Delta-G solvation = -3186.971307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.62423 -40.80172 -37.07772 -36.31294 -34.83702 -34.54602 -33.59982 -31.94383 -29.84769 -28.53766 -26.98237 -25.65237 -23.78206 -22.66030 -22.03663 -21.56421 -19.54473 -18.89500 -17.97774 -17.40630 -16.69058 -16.61439 -16.30377 -15.97490 -15.69950 -15.28676 -15.22005 -15.02668 -14.58671 -14.30028 -14.08689 -13.80800 -13.59033 -13.34270 -13.26921 -13.11441 -13.00487 -12.98933 -12.25806 -12.15917 -12.14710 -11.75271 -11.54474 -11.35046 -10.77737 -10.50016 -10.43369 -10.33594 -9.86655 -9.73527 -8.28818 -6.35915 -0.01830 0.25696 1.39947 1.42486 1.53688 1.79098 2.16753 2.37812 2.74459 3.06240 3.32404 3.42949 3.63783 3.68946 3.84113 3.93242 4.34899 4.38501 4.47045 4.49378 4.56880 4.62167 4.69263 4.75332 4.77777 4.80643 4.88926 5.04826 5.15524 5.17224 5.24565 5.38791 5.42106 5.43337 5.46067 5.67903 5.75985 6.01117 6.24578 6.71598 7.00194 7.12132 7.28455 7.59526 8.87970 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.002874 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.188015 B = 9739.652780 C =10115.869363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.122 3.878 3 C -0.176 4.176 4 C -0.020 4.020 5 C -0.121 4.121 6 C -0.171 4.171 7 C 0.191 3.809 8 N -0.726 5.726 9 C 0.700 3.300 10 O -0.638 6.638 11 N -0.732 5.732 12 C 0.165 3.835 13 C -0.012 4.012 14 C -0.538 4.538 15 H 0.029 0.971 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.960 3.040 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.236 1.236 22 C 0.119 3.881 23 N -0.517 5.517 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.162 0.838 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.408 0.592 34 H 0.409 0.591 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.035 0.965 39 H 0.268 0.732 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.756 2.891 -11.165 31.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.015 4.015 3 C -0.195 4.195 4 C -0.028 4.028 5 C -0.177 4.177 6 C -0.173 4.173 7 C 0.067 3.933 8 N -0.383 5.383 9 C 0.400 3.600 10 O -0.520 6.520 11 N -0.387 5.387 12 C 0.040 3.960 13 C -0.049 4.049 14 C -0.577 4.577 15 H 0.047 0.953 16 C -0.194 4.194 17 N -0.591 5.591 18 Si 0.782 3.218 19 H -0.191 1.191 20 H -0.213 1.213 21 H -0.159 1.159 22 C -0.039 4.039 23 N -0.228 5.228 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.179 0.821 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.244 0.756 34 H 0.245 0.755 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -29.393 1.961 -11.884 31.765 hybrid contribution 0.538 0.699 1.153 1.452 sum -28.855 2.660 -10.731 30.900 Atomic orbital electron populations 1.20813 0.86942 1.04347 1.03977 1.21889 0.98497 0.88283 0.92827 1.22135 0.93773 1.00190 1.03426 1.20491 0.94315 0.95465 0.92533 1.20943 0.99834 0.93183 1.03761 1.20618 0.95448 0.94449 1.06796 1.19807 0.88212 1.02346 0.82963 1.44938 1.04148 1.77918 1.11260 1.16107 0.82904 0.77893 0.83107 1.90892 1.57137 1.59009 1.44973 1.45123 1.08611 1.76744 1.08204 1.20873 0.78385 0.99747 0.96975 1.19641 0.95146 0.97915 0.92231 1.21258 0.92106 1.49588 0.94710 0.95255 1.26092 0.97150 0.94066 1.02102 1.70085 1.15140 1.51368 1.22517 0.85523 0.79602 0.79007 0.77626 1.19123 1.21318 1.15904 1.22887 0.89206 0.98525 0.93252 1.67616 1.10025 1.30506 1.14639 0.89366 0.90949 0.88525 0.82092 0.89652 0.89182 0.91384 0.91173 0.90828 0.75606 0.75475 0.94100 0.93937 0.94433 0.94722 0.92360 0.81877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.17 71.23 0.72 -0.24 16 2 C 0.12 1.88 6.78 42.55 0.29 2.17 16 3 C -0.18 -2.23 9.45 22.36 0.21 -2.02 16 4 C -0.02 -0.29 5.92 -19.67 -0.12 -0.40 16 5 C -0.12 -1.42 9.68 71.24 0.69 -0.73 16 6 C -0.17 -2.89 5.27 -19.77 -0.10 -2.99 16 7 C 0.19 3.83 5.25 85.63 0.45 4.28 16 8 N -0.73 -15.83 5.55 -482.30 -2.68 -18.50 16 9 C 0.70 22.30 8.57 179.05 1.53 23.84 16 10 O -0.64 -26.51 16.34 -3.99 -0.07 -26.57 16 11 N -0.73 -22.89 5.56 -478.53 -2.66 -25.55 16 12 C 0.16 6.75 5.61 86.38 0.48 7.23 16 13 C -0.01 -0.51 4.16 29.85 0.12 -0.38 16 14 C -0.54 -30.72 9.66 25.60 0.25 -30.47 16 15 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 16 C 0.00 0.17 5.47 84.65 0.46 0.63 16 17 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 18 Si 0.96 42.17 27.47 68.60 1.88 44.06 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 21 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 22 C 0.12 2.17 10.83 84.67 0.92 3.08 16 23 N -0.52 -10.22 10.27 -183.89 -1.89 -12.11 16 24 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.10 0.47 8.08 -2.39 -0.02 0.45 16 27 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.09 0.74 8.10 -2.39 -0.02 0.72 16 30 H 0.07 0.97 6.26 -2.38 -0.01 0.95 16 31 H 0.07 1.51 8.02 -2.38 -0.02 1.49 16 32 H 0.07 1.56 6.53 -2.39 -0.02 1.55 16 33 H 0.41 6.77 8.48 -92.71 -0.79 5.98 16 34 H 0.41 9.88 8.49 -92.71 -0.79 9.10 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.04 1.55 7.20 -2.39 -0.02 1.54 16 38 H 0.03 1.43 7.57 -2.39 -0.02 1.41 16 39 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.16 2.58 8.04 -2.91 -0.02 2.56 16 Total: -1.00 -75.46 338.55 0.23 -75.23 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -0.57 Total: 18.52 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 5.91 Total: 3.99 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -6.93 Total: -115.23 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.07 Total: -26.57 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.06 kcal Total: -75.46 0.23 -75.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454783378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.278 kcal (2) G-P(sol) polarization free energy of solvation -75.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds