Wall clock time and date at job start Mon Mar 30 2020 01:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38669 * 120.41810 * 2 1 4 4 C 1.38634 * 118.42354 * 180.02562 * 3 2 1 5 5 C 1.38228 * 119.15680 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.61625 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47466 * 124.99821 * 6 5 4 8 8 N 1.46505 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99489 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99511 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46736 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47033 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99931 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99890 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00276 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46777 * 90.00321 * 18 16 14 20 20 H 1.48503 * 109.47030 * 210.00105 * 18 16 14 21 21 H 1.48492 * 109.47275 * 330.00654 * 18 16 14 22 22 N 1.31851 * 120.76373 * 0.25495 * 5 4 3 23 23 C 1.31881 * 121.72845 * 359.47643 * 22 5 4 24 24 H 1.08998 * 109.47362 * 90.00482 * 1 2 3 25 25 H 1.09008 * 109.46790 * 210.00402 * 1 2 3 26 26 H 1.08997 * 109.47632 * 330.00092 * 1 2 3 27 27 H 1.08002 * 120.78750 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.41875 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47120 * 4.99574 * 6 5 4 30 30 H 1.08998 * 109.46862 * 245.00376 * 6 5 4 31 31 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 32 32 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 33 33 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 34 34 H 0.97003 * 120.00377 * 0.02562 * 11 9 8 35 35 H 1.08994 * 109.47121 * 299.99693 * 12 11 9 36 36 H 1.08994 * 109.47503 * 60.00345 * 12 11 9 37 37 H 1.08994 * 109.47144 * 299.99776 * 13 12 11 38 38 H 1.09004 * 109.46808 * 60.00030 * 13 12 11 39 39 H 0.96998 * 120.00482 * 180.02562 * 17 16 14 40 40 H 1.07996 * 119.61936 * 180.26831 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1476 -0.0005 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1468 -0.0017 7 6 6.2063 -0.9947 1.1799 8 7 7.6700 -1.0579 1.1783 9 6 8.3153 -1.7548 2.1345 10 8 7.6829 -2.3315 2.9980 11 7 9.6619 -1.8125 2.1333 12 6 10.3634 -2.5706 3.1723 13 6 11.8730 -2.4754 2.9416 14 6 12.5946 -3.2546 4.0107 15 1 12.0328 -3.7668 4.7777 16 6 13.9721 -3.3144 4.0090 17 7 14.6562 -2.6911 3.0747 18 14 14.8667 -4.2809 5.3339 19 1 15.0530 -5.6834 4.8828 20 1 16.1926 -3.6623 5.5878 21 1 14.0656 -4.2654 6.5841 22 7 3.5255 -1.1995 -0.0050 23 6 2.2067 -1.1916 0.0005 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6889 2.1423 -0.0004 28 1 4.1735 2.0593 -0.0001 29 1 6.1381 0.8605 0.0870 30 1 6.0748 -0.5966 -0.9332 31 1 5.7994 -2.0020 1.0911 32 1 5.8627 -0.5448 2.1113 33 1 8.1745 -0.5975 0.4896 34 1 10.1665 -1.3521 1.4446 35 1 10.1183 -2.1581 4.1510 36 1 10.0551 -3.6152 3.1307 37 1 12.1177 -2.8881 1.9630 38 1 12.1816 -1.4308 2.9829 39 1 15.6253 -2.7334 3.0733 40 1 1.6673 -2.1272 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454791054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:57 Heat of formation + Delta-G solvation = -18.813396 kcal Electronic energy + Delta-G solvation = -19734.092791 eV Core-core repulsion = 16547.951391 eV Total energy + Delta-G solvation = -3186.141401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.66795 -39.44482 -35.91073 -34.67651 -33.88573 -32.81306 -32.51660 -30.68226 -29.23555 -26.77675 -24.78065 -24.13063 -22.95391 -21.48739 -20.98661 -20.46923 -17.99988 -17.08984 -16.47769 -16.24277 -15.79574 -15.46786 -15.39130 -14.75301 -14.47882 -14.22409 -14.00184 -13.63558 -13.45584 -13.24028 -13.03621 -12.89947 -12.84133 -12.24212 -11.94208 -11.88559 -11.54682 -11.14354 -10.99306 -10.59807 -10.26650 -10.11717 -9.88762 -9.70576 -9.50777 -9.22194 -9.08275 -8.92607 -8.44258 -8.17703 -6.05795 -4.08100 0.73715 0.95274 3.08061 3.32387 3.38286 3.42853 3.44852 3.68615 3.97378 4.33036 4.43018 4.44545 4.54650 4.62833 4.76998 4.90969 4.96498 5.06577 5.13275 5.17905 5.31297 5.37880 5.42079 5.57269 5.72700 5.87577 5.91694 6.01450 6.35637 6.37854 6.45890 6.67955 6.83627 7.07385 7.31039 7.61786 7.68135 7.69835 7.93825 8.30600 8.51380 8.97180 9.08222 9.56403 11.05884 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.062333 B = 0.002147 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.094640 B =13040.203732 C =13297.551576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.146 4.146 3 C -0.076 4.076 4 C -0.163 4.163 5 C 0.129 3.871 6 C -0.080 4.080 7 C 0.150 3.850 8 N -0.755 5.755 9 C 0.698 3.302 10 O -0.598 6.598 11 N -0.739 5.739 12 C 0.140 3.860 13 C 0.013 3.987 14 C -0.520 4.520 15 H 0.060 0.940 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 N -0.474 5.474 23 C 0.104 3.896 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.393 0.607 34 H 0.393 0.607 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.261 0.739 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.565 10.344 -10.903 29.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.102 4.102 4 C -0.183 4.183 5 C -0.009 4.009 6 C -0.119 4.119 7 C 0.025 3.975 8 N -0.412 5.412 9 C 0.398 3.602 10 O -0.476 6.476 11 N -0.393 5.393 12 C 0.017 3.983 13 C -0.025 4.025 14 C -0.558 4.558 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 N -0.182 5.182 23 C -0.053 4.053 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.227 0.773 34 H 0.226 0.774 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -25.506 9.019 -10.123 28.886 hybrid contribution 0.588 0.821 -0.031 1.010 sum -24.919 9.840 -10.154 28.651 Atomic orbital electron populations 1.20716 0.90196 1.03211 1.02559 1.20959 0.97659 0.94327 1.01813 1.21483 0.93992 0.98207 0.96490 1.21992 0.95196 0.98940 1.02155 1.21004 0.95961 0.88569 0.95331 1.20719 0.89252 1.01723 1.00182 1.20960 0.78935 1.00702 0.96912 1.45107 1.06941 1.57262 1.31899 1.16046 0.82426 0.79812 0.81923 1.90891 1.66555 1.50686 1.39499 1.45527 1.04054 1.56366 1.33357 1.21581 0.94085 0.94125 0.88499 1.19329 0.87330 0.97903 0.97932 1.21065 0.91382 1.31700 1.11702 0.92210 1.24998 0.97650 0.95645 0.96055 1.69954 1.06909 1.42968 1.33559 0.86508 0.78950 0.80007 0.82063 1.20584 1.21211 1.19729 1.67486 1.08222 1.30967 1.11514 1.22689 0.89645 0.97583 0.95425 0.90934 0.91071 0.91359 0.84861 0.84628 0.89605 0.89180 0.90633 0.92105 0.77340 0.77426 0.92827 0.92808 0.95956 0.95969 0.92903 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.04 36.00 0.36 -0.13 16 2 C -0.15 -1.06 5.90 -104.48 -0.62 -1.68 16 3 C -0.08 -0.53 9.86 -39.28 -0.39 -0.92 16 4 C -0.16 -1.27 9.71 -39.44 -0.38 -1.65 16 5 C 0.13 1.26 6.17 -82.59 -0.51 0.76 16 6 C -0.08 -0.70 5.73 -27.89 -0.16 -0.86 16 7 C 0.15 1.87 5.53 -4.04 -0.02 1.85 16 8 N -0.76 -10.09 5.56 -65.22 -0.36 -10.45 16 9 C 0.70 12.93 8.57 -86.92 -0.74 12.19 16 10 O -0.60 -13.69 16.34 5.29 0.09 -13.60 16 11 N -0.74 -13.61 5.56 -65.22 -0.36 -13.97 16 12 C 0.14 3.11 5.61 -4.04 -0.02 3.09 16 13 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 14 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 18 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 N -0.47 -5.31 9.89 -9.48 -0.09 -5.40 16 23 C 0.10 0.93 10.86 -17.55 -0.19 0.74 16 24 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.07 0.27 8.09 -51.92 -0.42 -0.15 16 26 H 0.07 0.25 8.10 -51.93 -0.42 -0.17 16 27 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.14 0.74 7.95 -52.49 -0.42 0.33 16 29 H 0.09 0.56 7.87 -51.93 -0.41 0.15 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.11 7.95 -51.93 -0.41 0.70 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.39 3.92 8.49 -40.82 -0.35 3.57 16 34 H 0.39 6.13 8.49 -40.82 -0.35 5.78 16 35 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -34.97 345.23 -9.16 -44.13 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.12 Total: 2.97 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -3.23 Total: 0.13 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.08 Total: -55.47 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.09 Total: -13.60 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.97 -9.16 -44.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454791054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.319 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds