Wall clock time and date at job start Mon Mar 30 2020 01:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38669 * 120.41810 * 2 1 4 4 C 1.38634 * 118.42354 * 180.02562 * 3 2 1 5 5 C 1.38228 * 119.15680 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.61625 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47466 * 124.99821 * 6 5 4 8 8 N 1.46505 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21584 * 120.00541 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99489 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99511 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.46736 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47033 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99931 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99890 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00276 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46777 * 90.00321 * 18 16 14 20 20 H 1.48503 * 109.47030 * 210.00105 * 18 16 14 21 21 H 1.48492 * 109.47275 * 330.00654 * 18 16 14 22 22 N 1.31851 * 120.76373 * 0.25495 * 5 4 3 23 23 C 1.31881 * 121.72845 * 359.47643 * 22 5 4 24 24 H 1.08998 * 109.47362 * 90.00482 * 1 2 3 25 25 H 1.09008 * 109.46790 * 210.00402 * 1 2 3 26 26 H 1.08997 * 109.47632 * 330.00092 * 1 2 3 27 27 H 1.08002 * 120.78750 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.41875 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47120 * 4.99574 * 6 5 4 30 30 H 1.08998 * 109.46862 * 245.00376 * 6 5 4 31 31 H 1.09002 * 109.47153 * 59.99773 * 7 6 5 32 32 H 1.09001 * 109.46832 * 299.99964 * 7 6 5 33 33 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 34 34 H 0.97003 * 120.00377 * 0.02562 * 11 9 8 35 35 H 1.08994 * 109.47121 * 299.99693 * 12 11 9 36 36 H 1.08994 * 109.47503 * 60.00345 * 12 11 9 37 37 H 1.08994 * 109.47144 * 299.99776 * 13 12 11 38 38 H 1.09004 * 109.46808 * 60.00030 * 13 12 11 39 39 H 0.96998 * 120.00482 * 180.02562 * 17 16 14 40 40 H 1.07996 * 119.61936 * 180.26831 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1476 -0.0005 5 6 4.2256 -0.0823 -0.0005 6 6 5.7312 -0.1468 -0.0017 7 6 6.2063 -0.9947 1.1799 8 7 7.6700 -1.0579 1.1783 9 6 8.3153 -1.7548 2.1345 10 8 7.6829 -2.3315 2.9980 11 7 9.6619 -1.8125 2.1333 12 6 10.3634 -2.5706 3.1723 13 6 11.8730 -2.4754 2.9416 14 6 12.5946 -3.2546 4.0107 15 1 12.0328 -3.7668 4.7777 16 6 13.9721 -3.3144 4.0090 17 7 14.6562 -2.6911 3.0747 18 14 14.8667 -4.2809 5.3339 19 1 15.0530 -5.6834 4.8828 20 1 16.1926 -3.6623 5.5878 21 1 14.0656 -4.2654 6.5841 22 7 3.5255 -1.1995 -0.0050 23 6 2.2067 -1.1916 0.0005 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.6889 2.1423 -0.0004 28 1 4.1735 2.0593 -0.0001 29 1 6.1381 0.8605 0.0870 30 1 6.0748 -0.5966 -0.9332 31 1 5.7994 -2.0020 1.0911 32 1 5.8627 -0.5448 2.1113 33 1 8.1745 -0.5975 0.4896 34 1 10.1665 -1.3521 1.4446 35 1 10.1183 -2.1581 4.1510 36 1 10.0551 -3.6152 3.1307 37 1 12.1177 -2.8881 1.9630 38 1 12.1816 -1.4308 2.9829 39 1 15.6253 -2.7334 3.0733 40 1 1.6673 -2.1272 0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454791054.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:56 Heat of formation + Delta-G solvation = -43.472529 kcal Electronic energy + Delta-G solvation = -19735.162092 eV Core-core repulsion = 16547.951391 eV Total energy + Delta-G solvation = -3187.210701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32440 -40.88754 -37.09012 -36.30132 -34.89044 -34.62996 -33.24231 -31.86848 -30.70676 -27.61539 -26.48099 -24.95968 -23.78466 -22.84819 -22.20228 -21.92407 -19.45048 -18.42645 -17.75886 -17.28207 -16.89499 -16.77755 -16.46674 -15.97079 -15.78105 -15.42847 -15.16387 -15.02993 -14.62094 -14.27386 -14.05127 -13.69450 -13.68079 -13.25878 -13.19887 -12.94282 -12.77131 -12.51427 -12.49134 -12.34922 -12.18937 -11.68345 -11.50184 -11.22345 -10.69922 -10.59578 -10.39625 -10.29648 -9.71383 -9.66986 -8.22898 -6.32962 0.13965 0.37790 1.42595 1.43282 1.54666 1.76119 2.16734 2.42334 2.80857 3.11767 3.28629 3.47474 3.81775 3.95220 3.99931 4.11739 4.12927 4.23794 4.45651 4.49610 4.53176 4.63571 4.77325 4.83587 4.87172 4.88067 4.98102 5.02463 5.21913 5.23978 5.32373 5.38576 5.48099 5.53078 5.61027 5.80179 5.82991 6.07214 6.18738 6.79914 7.07292 7.15846 7.36126 7.60790 8.88950 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.062333 B = 0.002147 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.094640 B =13040.203732 C =13297.551576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.144 4.144 3 C -0.082 4.082 4 C -0.162 4.162 5 C 0.103 3.897 6 C -0.067 4.067 7 C 0.155 3.845 8 N -0.731 5.731 9 C 0.696 3.304 10 O -0.644 6.644 11 N -0.732 5.732 12 C 0.160 3.840 13 C 0.024 3.976 14 C -0.547 4.547 15 H 0.058 0.942 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.965 3.035 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.267 1.267 22 N -0.511 5.511 23 C 0.080 3.920 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.162 0.838 28 H 0.161 0.839 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.414 0.586 34 H 0.408 0.592 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.010 0.990 38 H 0.011 0.989 39 H 0.266 0.734 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.323 11.670 -11.363 30.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.146 4.146 3 C -0.107 4.107 4 C -0.182 4.182 5 C -0.035 4.035 6 C -0.105 4.105 7 C 0.030 3.970 8 N -0.388 5.388 9 C 0.396 3.604 10 O -0.526 6.526 11 N -0.387 5.387 12 C 0.035 3.965 13 C -0.014 4.014 14 C -0.585 4.585 15 H 0.076 0.924 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.790 3.210 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.192 1.192 22 N -0.220 5.220 23 C -0.077 4.077 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.179 0.821 28 H 0.179 0.821 29 H 0.133 0.867 30 H 0.115 0.885 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.251 0.749 34 H 0.244 0.756 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.075 0.925 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -26.274 10.385 -10.647 30.191 hybrid contribution 0.733 0.444 0.065 0.859 sum -25.541 10.829 -10.582 29.691 Atomic orbital electron populations 1.20773 0.88188 1.04064 1.03448 1.21286 0.99149 0.93894 1.00284 1.21897 0.93969 0.99255 0.95608 1.22289 0.95908 0.99019 1.00951 1.21209 0.96258 0.89180 0.96851 1.20660 0.89099 1.02401 0.98377 1.20942 0.77771 1.00031 0.98267 1.44890 1.07458 1.55654 1.30789 1.16195 0.82104 0.79870 0.82275 1.90861 1.67401 1.52722 1.41630 1.45193 1.04270 1.56191 1.33017 1.21079 0.92456 0.93876 0.89076 1.19133 0.89015 0.96601 0.96605 1.21467 0.92224 1.32351 1.12505 0.92387 1.25865 0.98455 0.96544 0.98311 1.70052 1.07387 1.43967 1.35095 0.85439 0.77718 0.78638 0.79208 1.19807 1.20411 1.19157 1.67421 1.09488 1.32336 1.12759 1.22987 0.89372 0.98974 0.96347 0.89889 0.90633 0.90122 0.82069 0.82145 0.86698 0.88481 0.93290 0.93494 0.74898 0.75594 0.93903 0.94030 0.97198 0.97094 0.92542 0.81858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.04 71.24 0.72 -0.03 16 2 C -0.14 -1.91 5.90 -19.77 -0.12 -2.02 16 3 C -0.08 -0.96 9.86 22.47 0.22 -0.74 16 4 C -0.16 -2.19 9.71 22.36 0.22 -1.97 16 5 C 0.10 1.92 6.17 42.55 0.26 2.19 16 6 C -0.07 -1.08 5.73 29.85 0.17 -0.91 16 7 C 0.15 3.84 5.53 86.38 0.48 4.31 16 8 N -0.73 -18.84 5.56 -478.53 -2.66 -21.50 16 9 C 0.70 25.72 8.57 179.05 1.53 27.25 16 10 O -0.64 -30.09 16.34 -3.98 -0.07 -30.16 16 11 N -0.73 -26.77 5.56 -478.53 -2.66 -29.43 16 12 C 0.16 7.20 5.61 86.38 0.48 7.69 16 13 C 0.02 1.23 5.09 29.85 0.15 1.39 16 14 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 16 C 0.01 0.40 5.46 84.66 0.46 0.86 16 17 N -0.93 -54.56 13.29 21.45 0.28 -54.27 16 18 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 N -0.51 -11.61 9.89 -183.89 -1.82 -13.43 16 23 C 0.08 1.44 10.86 84.67 0.92 2.36 16 24 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.07 0.47 8.09 -2.38 -0.02 0.45 16 26 H 0.08 0.38 8.10 -2.39 -0.02 0.36 16 27 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 28 H 0.16 1.24 7.95 -2.91 -0.02 1.22 16 29 H 0.11 1.15 7.87 -2.39 -0.02 1.13 16 30 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.49 7.95 -2.39 -0.02 1.48 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 33 H 0.41 7.37 8.49 -92.71 -0.79 6.58 16 34 H 0.41 12.37 8.49 -92.71 -0.79 11.59 16 35 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -76.42 345.23 0.31 -76.11 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -0.53 Total: 17.01 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 5.73 Total: 9.48 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -6.86 Total: -118.63 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.07 Total: -30.16 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -76.42 0.31 -76.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454791054.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.634 kcal (2) G-P(sol) polarization free energy of solvation -76.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds