Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 119.54171 * 2 1 4 4 C 1.38503 * 119.23898 * 180.27089 * 3 2 1 5 5 C 1.50697 * 120.82191 * 179.72838 * 4 3 2 6 6 C 1.39278 * 118.36092 * 359.46306 * 4 3 2 7 7 N 1.39962 * 120.48904 * 180.24669 * 6 4 3 8 8 C 1.34774 * 120.00395 * 304.20115 * 7 6 4 9 9 O 1.21591 * 119.99870 * 353.66397 * 8 7 6 10 10 N 1.34781 * 119.99980 * 173.66169 * 8 7 6 11 11 C 1.46507 * 119.99689 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46801 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.46761 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00086 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99969 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99896 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00213 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46962 * 89.99856 * 17 15 13 19 19 H 1.48506 * 109.47290 * 209.99472 * 17 15 13 20 20 H 1.48497 * 109.47200 * 329.99742 * 17 15 13 21 21 C 1.38841 * 119.01996 * 0.27148 * 6 4 3 22 22 C 1.50701 * 119.66610 * 179.97438 * 21 6 4 23 23 N 1.31822 * 120.67041 * 0.02562 * 21 6 4 24 24 H 1.08996 * 109.47569 * 270.27500 * 1 2 3 25 25 H 1.08997 * 109.47563 * 30.28126 * 1 2 3 26 26 H 1.09001 * 109.46902 * 150.27546 * 1 2 3 27 27 H 1.08011 * 120.38343 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47410 * 275.58499 * 5 4 3 29 29 H 1.09001 * 109.47075 * 155.58566 * 5 4 3 30 30 H 1.08999 * 109.46972 * 35.58823 * 5 4 3 31 31 H 0.97008 * 119.99797 * 124.20075 * 7 6 4 32 32 H 0.96997 * 120.00154 * 0.02562 * 10 8 7 33 33 H 1.08994 * 109.46947 * 299.99941 * 11 10 8 34 34 H 1.09001 * 109.46965 * 60.00283 * 11 10 8 35 35 H 1.09004 * 109.46721 * 299.99664 * 12 11 10 36 36 H 1.08997 * 109.47433 * 59.99929 * 12 11 10 37 37 H 0.97006 * 120.00065 * 180.02562 * 16 15 13 38 38 H 1.09007 * 109.47260 * 89.80916 * 22 21 6 39 39 H 1.08998 * 109.47158 * 209.80855 * 22 21 6 40 40 H 1.08996 * 109.46989 * 329.81302 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2029 0.0000 4 6 3.5737 1.1956 -0.0057 5 6 4.3526 2.4856 -0.0120 6 6 4.2288 -0.0335 0.0002 7 7 5.6272 -0.0928 0.0000 8 6 6.3280 0.5293 -0.9687 9 8 5.7468 1.0437 -1.9047 10 7 7.6731 0.5812 -0.8999 11 6 8.4348 1.2579 -1.9526 12 6 9.9292 1.1724 -1.6359 13 6 10.7127 1.8690 -2.7185 14 1 10.1964 2.3265 -3.5495 15 6 12.0886 1.9213 -2.6487 16 7 12.7174 1.3637 -1.6370 17 14 13.0599 2.7841 -3.9909 18 1 13.2353 4.2147 -3.6332 19 1 14.3916 2.1417 -4.1292 20 1 12.3250 2.6820 -5.2772 21 6 3.4743 -1.1989 0.0058 22 6 4.1681 -2.5367 0.0117 23 7 2.1571 -1.1472 0.0050 24 1 -0.3634 0.0049 1.0276 25 1 -0.3634 0.8874 -0.5182 26 1 -0.3633 -0.8925 -0.5096 27 1 1.6474 2.1376 0.0004 28 1 4.4506 2.8459 -1.0361 29 1 5.3432 2.3140 0.4090 30 1 3.8275 3.2301 0.5864 31 1 6.0920 -0.5817 0.6971 32 1 8.1367 0.1705 -0.1534 33 1 8.2385 0.7757 -2.9102 34 1 8.1331 2.3041 -2.0040 35 1 10.1258 1.6544 -0.6782 36 1 10.2305 0.1261 -1.5848 37 1 13.6855 1.4008 -1.5877 38 1 4.3388 -2.8530 1.0408 39 1 3.5437 -3.2721 -0.4956 40 1 5.1237 -2.4526 -0.5058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455477651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = -13.436609 kcal Electronic energy + Delta-G solvation = -20989.549145 eV Core-core repulsion = 17803.640899 eV Total energy + Delta-G solvation = -3185.908246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05031 -39.34913 -35.69523 -34.70345 -34.07601 -32.98556 -32.17274 -29.62093 -29.02443 -27.70303 -26.43083 -24.61476 -22.05421 -21.51763 -20.93672 -20.37510 -18.50147 -17.35893 -16.94682 -16.34423 -15.09461 -15.05316 -14.92410 -14.59881 -14.51752 -13.82727 -13.60293 -13.44893 -13.29614 -13.26021 -12.99124 -12.63503 -12.32641 -12.30492 -12.17469 -11.84031 -11.64334 -11.23837 -11.07718 -10.66393 -10.45208 -10.17548 -10.11493 -9.67568 -9.47752 -9.30941 -9.24411 -8.64542 -8.44740 -8.20516 -6.12487 -4.15352 0.96811 1.21291 2.84286 3.27620 3.34022 3.36651 3.38425 3.64937 4.10768 4.35021 4.49395 4.57396 4.58997 4.96956 5.17318 5.24860 5.33459 5.34546 5.38576 5.42281 5.47441 5.51567 5.66886 5.73530 5.93172 6.02370 6.11650 6.18283 6.24680 6.32181 6.38910 6.69716 6.82198 6.88497 7.04730 7.50868 7.57962 7.86173 7.93557 8.17064 8.29472 8.81615 8.91140 9.49717 10.99133 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039071 B = 0.003106 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.463196 B = 9011.918918 C = 9386.505610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.119 3.881 3 C -0.169 4.169 4 C -0.026 4.026 5 C -0.110 4.110 6 C 0.111 3.889 7 N -0.693 5.693 8 C 0.698 3.302 9 O -0.580 6.580 10 N -0.733 5.733 11 C 0.140 3.860 12 C 0.013 3.987 13 C -0.522 4.522 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.123 3.877 22 C -0.102 4.102 23 N -0.479 5.479 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.134 0.866 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.404 0.596 32 H 0.395 0.605 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.792 -3.755 7.955 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.019 4.019 3 C -0.189 4.189 4 C -0.036 4.036 5 C -0.166 4.166 6 C 0.015 3.985 7 N -0.345 5.345 8 C 0.399 3.601 9 O -0.457 6.457 10 N -0.387 5.387 11 C 0.018 3.982 12 C -0.024 4.024 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.017 4.017 22 C -0.160 4.160 23 N -0.190 5.190 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.152 0.848 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.241 0.759 32 H 0.228 0.772 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.518 -4.037 7.119 22.090 hybrid contribution 1.643 0.828 0.017 1.840 sum -18.875 -3.210 7.136 20.433 Atomic orbital electron populations 1.20655 0.88845 1.03353 1.02816 1.21167 0.96857 0.88131 0.95733 1.21695 0.93402 0.99307 1.04514 1.20386 0.93796 0.95208 0.94187 1.20798 0.99274 0.92926 1.03642 1.17972 0.83161 0.93173 1.04229 1.42502 1.03692 1.57903 1.30382 1.16053 0.82330 0.79552 0.82210 1.90922 1.69396 1.51493 1.33840 1.45563 1.03833 1.60483 1.28811 1.21647 0.93030 0.95406 0.88165 1.19327 0.87257 0.97966 0.97882 1.21036 0.91389 1.35798 1.07806 0.92214 1.24992 0.97857 0.95456 0.95963 1.69954 1.08732 1.44329 1.30298 0.86507 0.79269 0.79621 0.82140 1.20546 1.21154 1.19704 1.21282 0.89211 0.94793 0.96397 1.20663 1.00149 0.92331 1.02844 1.67320 1.08343 1.29262 1.14094 0.90618 0.90821 0.90603 0.84774 0.89269 0.91574 0.91587 0.75936 0.77200 0.92631 0.92617 0.95938 0.95917 0.92822 0.90483 0.90289 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.16 36.00 0.37 -0.44 16 2 C 0.12 1.40 6.78 -82.57 -0.56 0.85 16 3 C -0.17 -1.98 9.46 -39.47 -0.37 -2.35 16 4 C -0.03 -0.35 5.54 -104.14 -0.58 -0.93 16 5 C -0.11 -1.44 8.43 36.00 0.30 -1.14 16 6 C 0.11 1.53 5.75 -83.54 -0.48 1.05 16 7 N -0.69 -8.97 3.85 -14.12 -0.05 -9.02 16 8 C 0.70 11.68 6.85 -86.92 -0.60 11.08 16 9 O -0.58 -11.90 14.17 5.29 0.07 -11.83 16 10 N -0.73 -12.26 5.56 -65.22 -0.36 -12.62 16 11 C 0.14 2.90 5.61 -4.04 -0.02 2.87 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 13 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 17 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.12 1.61 6.80 -82.37 -0.56 1.05 16 22 C -0.10 -1.05 9.90 36.01 0.36 -0.69 16 23 N -0.48 -6.40 10.18 -5.59 -0.06 -6.45 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 28 H 0.09 1.34 7.37 -51.93 -0.38 0.96 16 29 H 0.07 0.92 6.57 -51.93 -0.34 0.58 16 30 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 31 H 0.40 3.92 8.80 -40.82 -0.36 3.56 16 32 H 0.39 5.58 8.50 -40.82 -0.35 5.23 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.78 7.45 -51.93 -0.39 0.39 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -32.70 336.98 -8.31 -41.01 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.00 Total: 4.23 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.70 Total: -1.48 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.26 Total: -53.17 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.70 -8.31 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455477651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.573 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds