Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 119.54171 * 2 1 4 4 C 1.38503 * 119.23898 * 180.27089 * 3 2 1 5 5 C 1.50697 * 120.82191 * 179.72838 * 4 3 2 6 6 C 1.39278 * 118.36092 * 359.46306 * 4 3 2 7 7 N 1.39962 * 120.48904 * 180.24669 * 6 4 3 8 8 C 1.34774 * 120.00395 * 304.20115 * 7 6 4 9 9 O 1.21591 * 119.99870 * 353.66397 * 8 7 6 10 10 N 1.34781 * 119.99980 * 173.66169 * 8 7 6 11 11 C 1.46507 * 119.99689 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46801 * 180.02562 * 11 10 8 13 13 C 1.50700 * 109.46761 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00086 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99969 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99896 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00213 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46962 * 89.99856 * 17 15 13 19 19 H 1.48506 * 109.47290 * 209.99472 * 17 15 13 20 20 H 1.48497 * 109.47200 * 329.99742 * 17 15 13 21 21 C 1.38841 * 119.01996 * 0.27148 * 6 4 3 22 22 C 1.50701 * 119.66610 * 179.97438 * 21 6 4 23 23 N 1.31822 * 120.67041 * 0.02562 * 21 6 4 24 24 H 1.08996 * 109.47569 * 270.27500 * 1 2 3 25 25 H 1.08997 * 109.47563 * 30.28126 * 1 2 3 26 26 H 1.09001 * 109.46902 * 150.27546 * 1 2 3 27 27 H 1.08011 * 120.38343 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.47410 * 275.58499 * 5 4 3 29 29 H 1.09001 * 109.47075 * 155.58566 * 5 4 3 30 30 H 1.08999 * 109.46972 * 35.58823 * 5 4 3 31 31 H 0.97008 * 119.99797 * 124.20075 * 7 6 4 32 32 H 0.96997 * 120.00154 * 0.02562 * 10 8 7 33 33 H 1.08994 * 109.46947 * 299.99941 * 11 10 8 34 34 H 1.09001 * 109.46965 * 60.00283 * 11 10 8 35 35 H 1.09004 * 109.46721 * 299.99664 * 12 11 10 36 36 H 1.08997 * 109.47433 * 59.99929 * 12 11 10 37 37 H 0.97006 * 120.00065 * 180.02562 * 16 15 13 38 38 H 1.09007 * 109.47260 * 89.80916 * 22 21 6 39 39 H 1.08998 * 109.47158 * 209.80855 * 22 21 6 40 40 H 1.08996 * 109.46989 * 329.81302 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2029 0.0000 4 6 3.5737 1.1956 -0.0057 5 6 4.3526 2.4856 -0.0120 6 6 4.2288 -0.0335 0.0002 7 7 5.6272 -0.0928 0.0000 8 6 6.3280 0.5293 -0.9687 9 8 5.7468 1.0437 -1.9047 10 7 7.6731 0.5812 -0.8999 11 6 8.4348 1.2579 -1.9526 12 6 9.9292 1.1724 -1.6359 13 6 10.7127 1.8690 -2.7185 14 1 10.1964 2.3265 -3.5495 15 6 12.0886 1.9213 -2.6487 16 7 12.7174 1.3637 -1.6370 17 14 13.0599 2.7841 -3.9909 18 1 13.2353 4.2147 -3.6332 19 1 14.3916 2.1417 -4.1292 20 1 12.3250 2.6820 -5.2772 21 6 3.4743 -1.1989 0.0058 22 6 4.1681 -2.5367 0.0117 23 7 2.1571 -1.1472 0.0050 24 1 -0.3634 0.0049 1.0276 25 1 -0.3634 0.8874 -0.5182 26 1 -0.3633 -0.8925 -0.5096 27 1 1.6474 2.1376 0.0004 28 1 4.4506 2.8459 -1.0361 29 1 5.3432 2.3140 0.4090 30 1 3.8275 3.2301 0.5864 31 1 6.0920 -0.5817 0.6971 32 1 8.1367 0.1705 -0.1534 33 1 8.2385 0.7757 -2.9102 34 1 8.1331 2.3041 -2.0040 35 1 10.1258 1.6544 -0.6782 36 1 10.2305 0.1261 -1.5848 37 1 13.6855 1.4008 -1.5877 38 1 4.3388 -2.8530 1.0408 39 1 3.5437 -3.2721 -0.4956 40 1 5.1237 -2.4526 -0.5058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455477651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = -35.239864 kcal Electronic energy + Delta-G solvation = -20990.494605 eV Core-core repulsion = 17803.640899 eV Total energy + Delta-G solvation = -3186.853706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.12231 -40.57266 -37.02425 -36.16965 -35.08785 -34.80670 -33.29436 -31.34442 -29.88172 -28.69562 -27.55011 -26.35251 -23.35987 -22.64091 -22.45803 -21.51522 -19.79875 -18.54402 -18.41995 -17.94051 -16.52655 -16.45448 -16.20423 -15.89902 -15.73978 -15.15239 -15.00707 -14.65777 -14.29314 -14.23777 -14.07528 -13.87010 -13.63861 -13.21816 -13.12401 -12.95782 -12.92419 -12.66881 -12.55886 -12.51884 -12.25502 -11.70422 -11.54397 -11.33738 -11.29645 -10.60304 -10.47760 -10.29042 -9.99526 -9.27856 -8.24114 -6.34051 0.01235 0.23157 1.42096 1.42496 1.53250 1.61380 2.04329 2.41077 2.68761 3.11127 3.18866 3.33568 3.61725 3.69970 4.09037 4.24582 4.38635 4.46786 4.51655 4.55258 4.59276 4.65473 4.69110 4.72797 4.84318 4.86392 4.95976 5.11725 5.14044 5.20912 5.25020 5.29144 5.41468 5.49131 5.59863 5.77057 5.84816 5.91354 6.16883 6.79244 6.98853 6.99887 7.35294 7.49708 8.87731 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039071 B = 0.003106 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.463196 B = 9011.918918 C = 9386.505610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.113 3.887 3 C -0.171 4.171 4 C -0.044 4.044 5 C -0.103 4.103 6 C 0.085 3.915 7 N -0.672 5.672 8 C 0.703 3.297 9 O -0.618 6.618 10 N -0.727 5.727 11 C 0.162 3.838 12 C 0.024 3.976 13 C -0.546 4.546 14 H 0.059 0.941 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.963 3.037 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.267 1.267 21 C 0.116 3.884 22 C -0.100 4.100 23 N -0.497 5.497 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.161 0.839 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.421 0.579 32 H 0.409 0.591 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.010 0.990 36 H 0.009 0.991 37 H 0.266 0.734 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.962 -3.634 8.284 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.024 4.024 3 C -0.191 4.191 4 C -0.054 4.054 5 C -0.159 4.159 6 C -0.011 4.011 7 N -0.324 5.324 8 C 0.403 3.597 9 O -0.497 6.497 10 N -0.381 5.381 11 C 0.038 3.962 12 C -0.013 4.013 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.788 3.212 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.191 1.191 21 C -0.024 4.024 22 C -0.157 4.157 23 N -0.209 5.209 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.093 0.907 27 H 0.179 0.821 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.260 0.740 32 H 0.244 0.756 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.705 -3.949 7.500 23.301 hybrid contribution 1.898 0.765 -0.036 2.047 sum -19.806 -3.183 7.464 21.404 Atomic orbital electron populations 1.20761 0.86203 1.04273 1.04159 1.21825 0.98675 0.87776 0.94169 1.22003 0.92781 1.00594 1.03681 1.20630 0.94891 0.95163 0.94674 1.20707 0.99059 0.93678 1.02505 1.18178 0.83082 0.93871 1.05966 1.42153 1.03635 1.56974 1.29683 1.16040 0.81969 0.79318 0.82331 1.90898 1.70044 1.53170 1.35635 1.45199 1.03985 1.60470 1.28476 1.21101 0.91306 0.95149 0.88638 1.19125 0.89165 0.96512 0.96538 1.21460 0.92235 1.36150 1.08571 0.92314 1.25842 0.98934 0.96097 0.98212 1.70053 1.09168 1.45406 1.31963 0.85472 0.77760 0.78645 0.79344 1.19758 1.20577 1.19120 1.21658 0.89431 0.95564 0.95765 1.20711 0.99640 0.91087 1.04256 1.67425 1.08419 1.30145 1.14888 0.88923 0.88837 0.90745 0.82094 0.91614 0.92867 0.88913 0.74015 0.75559 0.93816 0.93502 0.97169 0.97227 0.92554 0.88244 0.90137 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 10.16 71.23 0.72 -0.59 16 2 C 0.11 2.47 6.78 42.56 0.29 2.76 16 3 C -0.17 -3.70 9.46 22.34 0.21 -3.49 16 4 C -0.04 -1.16 5.54 -19.55 -0.11 -1.27 16 5 C -0.10 -2.66 8.43 71.23 0.60 -2.06 16 6 C 0.09 2.30 5.75 38.24 0.22 2.52 16 7 N -0.67 -17.04 3.85 -316.86 -1.22 -18.26 16 8 C 0.70 23.52 6.85 179.05 1.23 24.75 16 9 O -0.62 -25.73 14.17 -4.00 -0.06 -25.78 16 10 N -0.73 -24.32 5.56 -478.51 -2.66 -26.98 16 11 C 0.16 6.81 5.61 86.38 0.48 7.30 16 12 C 0.02 1.19 5.09 29.85 0.15 1.34 16 13 C -0.55 -30.07 9.11 25.60 0.23 -29.84 16 14 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -53.69 13.29 21.45 0.28 -53.40 16 17 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 21 C 0.12 2.92 6.80 42.71 0.29 3.21 16 22 C -0.10 -1.91 9.90 71.24 0.71 -1.20 16 23 N -0.50 -12.64 10.18 -171.60 -1.75 -14.39 16 24 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16 25 H 0.09 0.90 8.08 -2.39 -0.02 0.89 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.16 2.48 8.06 -2.90 -0.02 2.45 16 28 H 0.07 2.01 7.37 -2.39 -0.02 2.00 16 29 H 0.05 1.47 6.57 -2.39 -0.02 1.46 16 30 H 0.09 1.80 8.13 -2.39 -0.02 1.78 16 31 H 0.42 7.72 8.80 -92.70 -0.82 6.90 16 32 H 0.41 11.39 8.50 -92.71 -0.79 10.60 16 33 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 38 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 1.43 7.45 -2.39 -0.02 1.41 16 Total: -1.00 -70.27 336.98 1.57 -68.69 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.54 Total: 20.53 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.49 Total: 4.32 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -5.34 Total: -113.03 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.06 Total: -25.78 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -70.27 1.57 -68.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455477651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.453 kcal (2) G-P(sol) polarization free energy of solvation -70.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds