Wall clock time and date at job start Mon Mar 30 2020 01:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31882 * 118.95128 * 2 1 4 4 C 1.32134 * 120.96194 * 179.97438 * 3 2 1 5 5 C 1.39965 * 118.92578 * 0.02562 * 4 3 2 6 6 C 1.47831 * 120.93984 * 180.02562 * 5 4 3 7 7 O 1.21557 * 120.00162 * 173.92905 * 6 5 4 8 8 N 1.34780 * 120.00181 * 353.93088 * 6 5 4 9 9 C 1.46498 * 120.00008 * 179.72388 * 8 6 5 10 10 C 1.53008 * 109.46818 * 180.27658 * 9 8 6 11 11 C 1.53001 * 109.46827 * 300.00133 * 10 9 8 12 12 C 1.52998 * 109.47051 * 60.00160 * 10 9 8 13 13 C 1.50703 * 109.46813 * 180.02562 * 10 9 8 14 14 H 1.07999 * 120.00281 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99940 * 179.97438 * 13 10 9 16 16 N 1.31524 * 119.99825 * 0.02562 * 15 13 10 17 17 Si 1.86790 * 120.00143 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47429 * 60.00422 * 17 15 13 19 19 H 1.48502 * 109.47289 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47352 * 300.00127 * 17 15 13 21 21 C 1.39928 * 118.12166 * 0.26661 * 5 4 3 22 22 C 1.50699 * 120.53865 * 179.72280 * 21 5 4 23 23 N 1.31858 * 118.94836 * 179.97438 * 2 1 3 24 24 H 1.09009 * 109.46924 * 90.00267 * 1 2 3 25 25 H 1.08994 * 109.47563 * 210.00083 * 1 2 3 26 26 H 1.09005 * 109.47104 * 330.00648 * 1 2 3 27 27 H 1.08005 * 120.53630 * 179.97438 * 4 3 2 28 28 H 0.97002 * 119.99899 * 0.02562 * 8 6 5 29 29 H 1.08993 * 109.47120 * 300.27569 * 9 8 6 30 30 H 1.09001 * 109.47009 * 60.27754 * 9 8 6 31 31 H 1.08996 * 109.47107 * 60.00437 * 11 10 9 32 32 H 1.08997 * 109.46697 * 180.02562 * 11 10 9 33 33 H 1.09003 * 109.47331 * 299.99539 * 11 10 9 34 34 H 1.08999 * 109.46928 * 59.99764 * 12 10 9 35 35 H 1.08997 * 109.46822 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.47030 * 299.99709 * 12 10 9 37 37 H 0.96996 * 119.99826 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.47025 * 83.67377 * 22 21 5 39 39 H 1.09003 * 109.47131 * 203.67314 * 22 21 5 40 40 H 1.08998 * 109.47246 * 323.67714 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0002 0.0005 6 6 5.6638 -0.0002 0.0016 7 8 6.2715 -1.0471 0.1129 8 7 6.3379 1.1604 -0.1207 9 6 7.8028 1.1610 -0.1135 10 6 8.3130 2.5961 -0.2594 11 6 7.8092 3.1848 -1.5787 12 6 7.7970 3.4418 0.9065 13 6 9.8200 2.5966 -0.2527 14 1 10.3599 1.6664 -0.1546 15 6 10.5096 3.7844 -0.3727 16 7 9.8521 4.9172 -0.4927 17 14 12.3775 3.7850 -0.3651 18 1 12.8774 2.9641 -1.4971 19 1 12.8727 5.1779 -0.5065 20 1 12.8674 3.2137 0.9150 21 6 3.4660 -1.2003 -0.0058 22 6 4.1856 -2.5244 -0.0124 23 7 2.1452 -1.1538 0.0005 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 3.9817 2.1493 0.0001 28 1 5.8530 1.9959 -0.2092 29 1 8.1617 0.7416 0.8263 30 1 8.1705 0.5584 -0.9442 31 1 6.7192 3.1844 -1.5840 32 1 8.1730 4.2069 -1.6829 33 1 8.1769 2.5823 -2.4094 34 1 8.1559 3.0223 1.8463 35 1 8.1608 4.4640 0.8028 36 1 6.7070 3.4414 0.9011 37 1 10.3372 5.7529 -0.5768 38 1 4.4583 -2.7948 1.0078 39 1 3.5321 -3.2909 -0.4291 40 1 5.0867 -2.4452 -0.6205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457994488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:33 Heat of formation + Delta-G solvation = 0.018835 kcal Electronic energy + Delta-G solvation = -21471.317764 eV Core-core repulsion = 18285.992990 eV Total energy + Delta-G solvation = -3185.324774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40757 -39.18426 -36.54075 -34.63335 -33.77495 -33.17428 -30.98334 -29.32769 -28.60535 -25.79568 -25.66945 -24.95542 -23.98969 -22.41358 -20.62771 -18.96034 -17.99622 -17.55706 -16.08668 -15.86347 -15.75267 -15.06334 -14.75901 -14.68866 -13.93007 -13.64923 -13.44283 -13.14345 -12.96232 -12.79103 -12.61199 -12.52659 -12.32551 -12.14936 -11.66876 -11.45356 -11.24461 -10.89973 -10.77007 -10.67085 -10.45118 -10.24721 -9.70856 -9.63389 -9.53056 -9.41720 -9.32396 -8.86295 -8.55338 -8.39180 -6.06646 -4.17179 0.36274 0.89603 2.95666 3.27362 3.32061 3.34159 3.45102 3.68761 3.70176 3.87365 4.26844 4.36263 4.70454 4.90213 5.02041 5.20212 5.23448 5.27543 5.47634 5.59613 5.64982 5.77592 6.04373 6.12509 6.23541 6.30696 6.42535 6.66669 6.74363 6.78913 6.84620 6.89056 6.94563 7.27961 7.49020 7.64095 7.82831 7.90243 7.94789 8.07529 8.31428 8.46793 8.83031 9.48987 10.94769 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034665 B = 0.003808 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.530149 B = 7350.975072 C = 7953.631234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.332 3.668 3 N -0.527 5.527 4 C 0.188 3.812 5 C -0.246 4.246 6 C 0.558 3.442 7 O -0.537 6.537 8 N -0.707 5.707 9 C 0.132 3.868 10 C 0.056 3.944 11 C -0.132 4.132 12 C -0.131 4.131 13 C -0.508 4.508 14 H 0.058 0.942 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.235 3.765 22 C -0.110 4.110 23 N -0.527 5.527 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.173 0.827 28 H 0.396 0.604 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.005 0.995 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.028 0.972 35 H 0.087 0.913 36 H 0.005 0.995 37 H 0.261 0.739 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.922 -6.958 0.486 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 N -0.242 5.242 4 C 0.021 3.979 5 C -0.254 4.254 6 C 0.343 3.657 7 O -0.416 6.416 8 N -0.357 5.357 9 C 0.010 3.990 10 C 0.055 3.945 11 C -0.189 4.189 12 C -0.189 4.189 13 C -0.547 4.547 14 H 0.076 0.924 15 C -0.134 4.134 16 N -0.524 5.524 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C 0.088 3.912 22 C -0.167 4.167 23 N -0.242 5.242 24 H 0.107 0.893 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.190 0.810 28 H 0.232 0.768 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.024 0.976 32 H 0.105 0.895 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.105 0.895 36 H 0.024 0.976 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.413 -7.481 0.544 17.142 hybrid contribution 1.730 0.646 -0.024 1.847 sum -13.683 -6.836 0.520 15.304 Atomic orbital electron populations 1.20614 0.85448 1.04330 1.04061 1.23486 0.98399 0.83469 0.88059 1.68289 1.09701 1.30051 1.16126 1.23522 0.89599 0.97914 0.86843 1.21761 0.96789 0.96171 1.10645 1.17738 0.85486 0.84722 0.77772 1.90709 1.69457 1.30897 1.50569 1.46261 1.09593 1.08035 1.71860 1.21816 0.75411 1.00938 1.00871 1.18371 0.95540 0.87755 0.92831 1.21845 0.95079 1.04336 0.97670 1.21843 0.95042 1.04358 0.97677 1.20926 0.89830 0.93312 1.50612 0.92409 1.24877 0.98377 0.95497 0.94697 1.69789 1.35033 0.97803 1.49747 0.86618 0.85519 0.76958 0.78682 1.20258 1.21315 1.20262 1.21994 0.88680 0.95806 0.84677 1.21078 1.00523 0.90285 1.04779 1.68243 1.09261 1.30099 1.16625 0.89340 0.89474 0.89382 0.81029 0.76757 0.92286 0.92287 0.97622 0.89472 0.95335 0.95322 0.89468 0.97637 0.92883 0.89183 0.90859 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.31 36.01 0.37 -0.33 16 2 C 0.33 4.13 7.64 -157.06 -1.20 2.93 16 3 N -0.53 -6.96 10.32 -10.39 -0.11 -7.07 16 4 C 0.19 2.47 10.80 -16.78 -0.18 2.29 16 5 C -0.25 -3.58 5.91 -104.69 -0.62 -4.19 16 6 C 0.56 9.32 7.72 -12.33 -0.10 9.23 16 7 O -0.54 -10.13 13.54 5.32 0.07 -10.06 16 8 N -0.71 -11.95 4.91 -61.25 -0.30 -12.26 16 9 C 0.13 2.65 4.50 -4.04 -0.02 2.63 16 10 C 0.06 1.24 0.50 -155.65 -0.08 1.16 16 11 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 12 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 13 C -0.51 -12.93 8.01 -34.44 -0.28 -13.21 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 16 N -0.89 -23.07 9.35 55.43 0.52 -22.55 16 17 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 C 0.23 3.31 6.86 -81.82 -0.56 2.75 16 22 C -0.11 -1.38 8.99 36.01 0.32 -1.05 16 23 N -0.53 -7.11 10.26 -6.67 -0.07 -7.18 16 24 H 0.09 0.61 8.14 -51.92 -0.42 0.18 16 25 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.17 1.89 6.58 -52.48 -0.35 1.54 16 28 H 0.40 6.02 4.34 -40.82 -0.18 5.85 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 32 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 36 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 37 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.11 1.51 5.97 -51.93 -0.31 1.20 16 LS Contribution 323.87 15.07 4.88 4.88 Total: -1.00 -28.13 323.87 -7.37 -35.51 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.52 Total: 4.69 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.83 Total: -1.28 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.04 Total: -49.06 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.13 -7.37 -35.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.526 kcal (2) G-P(sol) polarization free energy of solvation -28.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds