Wall clock time and date at job start Mon Mar 30 2020 01:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31882 * 118.95128 * 2 1 4 4 C 1.32134 * 120.96194 * 179.97438 * 3 2 1 5 5 C 1.39965 * 118.92578 * 0.02562 * 4 3 2 6 6 C 1.47831 * 120.93984 * 180.02562 * 5 4 3 7 7 O 1.21557 * 120.00162 * 173.92905 * 6 5 4 8 8 N 1.34780 * 120.00181 * 353.93088 * 6 5 4 9 9 C 1.46498 * 120.00008 * 179.72388 * 8 6 5 10 10 C 1.53008 * 109.46818 * 180.27658 * 9 8 6 11 11 C 1.53001 * 109.46827 * 300.00133 * 10 9 8 12 12 C 1.52998 * 109.47051 * 60.00160 * 10 9 8 13 13 C 1.50703 * 109.46813 * 180.02562 * 10 9 8 14 14 H 1.07999 * 120.00281 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99940 * 179.97438 * 13 10 9 16 16 N 1.31524 * 119.99825 * 0.02562 * 15 13 10 17 17 Si 1.86790 * 120.00143 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47429 * 60.00422 * 17 15 13 19 19 H 1.48502 * 109.47289 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47352 * 300.00127 * 17 15 13 21 21 C 1.39928 * 118.12166 * 0.26661 * 5 4 3 22 22 C 1.50699 * 120.53865 * 179.72280 * 21 5 4 23 23 N 1.31858 * 118.94836 * 179.97438 * 2 1 3 24 24 H 1.09009 * 109.46924 * 90.00267 * 1 2 3 25 25 H 1.08994 * 109.47563 * 210.00083 * 1 2 3 26 26 H 1.09005 * 109.47104 * 330.00648 * 1 2 3 27 27 H 1.08005 * 120.53630 * 179.97438 * 4 3 2 28 28 H 0.97002 * 119.99899 * 0.02562 * 8 6 5 29 29 H 1.08993 * 109.47120 * 300.27569 * 9 8 6 30 30 H 1.09001 * 109.47009 * 60.27754 * 9 8 6 31 31 H 1.08996 * 109.47107 * 60.00437 * 11 10 9 32 32 H 1.08997 * 109.46697 * 180.02562 * 11 10 9 33 33 H 1.09003 * 109.47331 * 299.99539 * 11 10 9 34 34 H 1.08999 * 109.46928 * 59.99764 * 12 10 9 35 35 H 1.08997 * 109.46822 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.47030 * 299.99709 * 12 10 9 37 37 H 0.96996 * 119.99826 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.47025 * 83.67377 * 22 21 5 39 39 H 1.09003 * 109.47131 * 203.67314 * 22 21 5 40 40 H 1.08998 * 109.47246 * 323.67714 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4659 1.2004 0.0005 5 6 4.1855 -0.0002 0.0005 6 6 5.6638 -0.0002 0.0016 7 8 6.2715 -1.0471 0.1129 8 7 6.3379 1.1604 -0.1207 9 6 7.8028 1.1610 -0.1135 10 6 8.3130 2.5961 -0.2594 11 6 7.8092 3.1848 -1.5787 12 6 7.7970 3.4418 0.9065 13 6 9.8200 2.5966 -0.2527 14 1 10.3599 1.6664 -0.1546 15 6 10.5096 3.7844 -0.3727 16 7 9.8521 4.9172 -0.4927 17 14 12.3775 3.7850 -0.3651 18 1 12.8774 2.9641 -1.4971 19 1 12.8727 5.1779 -0.5065 20 1 12.8674 3.2137 0.9150 21 6 3.4660 -1.2003 -0.0058 22 6 4.1856 -2.5244 -0.0124 23 7 2.1452 -1.1538 0.0005 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 3.9817 2.1493 0.0001 28 1 5.8530 1.9959 -0.2092 29 1 8.1617 0.7416 0.8263 30 1 8.1705 0.5584 -0.9442 31 1 6.7192 3.1844 -1.5840 32 1 8.1730 4.2069 -1.6829 33 1 8.1769 2.5823 -2.4094 34 1 8.1559 3.0223 1.8463 35 1 8.1608 4.4640 0.8028 36 1 6.7070 3.4414 0.9011 37 1 10.3372 5.7529 -0.5768 38 1 4.4583 -2.7948 1.0078 39 1 3.5321 -3.2909 -0.4291 40 1 5.0867 -2.4452 -0.6205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457994488.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:32 Heat of formation + Delta-G solvation = -16.505591 kcal Electronic energy + Delta-G solvation = -21472.034316 eV Core-core repulsion = 18285.992990 eV Total energy + Delta-G solvation = -3186.041327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.45600 -40.53345 -38.19083 -35.75280 -35.04367 -34.47124 -32.72269 -30.18273 -29.71798 -27.56009 -27.42718 -26.61557 -25.03543 -23.46564 -21.95247 -20.65530 -19.17515 -18.80499 -17.76663 -16.99923 -16.86110 -16.57948 -16.49042 -15.96941 -15.30685 -14.85917 -14.67967 -14.56774 -14.13626 -14.09040 -13.99321 -13.35244 -13.28932 -13.19671 -13.12970 -13.08980 -12.73173 -12.66736 -12.61011 -12.24807 -12.12434 -11.68000 -11.48078 -11.25964 -10.81452 -10.68102 -10.61130 -10.44440 -10.38387 -9.95689 -8.01464 -6.17102 -0.68508 -0.13032 1.45117 1.46819 1.52699 1.73461 2.10591 2.48181 2.61108 2.80958 2.89762 3.22541 3.25959 3.59755 3.79778 4.06925 4.36630 4.43519 4.52265 4.64950 4.67028 4.71317 4.72043 4.82108 4.91217 4.98671 5.05406 5.10057 5.15745 5.20043 5.32317 5.38273 5.55124 5.67737 5.68528 5.77662 6.15970 6.21704 6.43698 6.50872 6.86933 6.88727 7.13164 7.50746 8.97147 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034665 B = 0.003808 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.530149 B = 7350.975072 C = 7953.631234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.329 3.671 3 N -0.536 5.536 4 C 0.195 3.805 5 C -0.262 4.262 6 C 0.563 3.437 7 O -0.562 6.562 8 N -0.702 5.702 9 C 0.149 3.851 10 C 0.051 3.949 11 C -0.122 4.122 12 C -0.122 4.122 13 C -0.529 4.529 14 H 0.047 0.953 15 C 0.029 3.971 16 N -0.899 5.899 17 Si 0.944 3.056 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.277 1.277 21 C 0.229 3.771 22 C -0.105 4.105 23 N -0.535 5.535 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.192 0.808 28 H 0.406 0.594 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.260 0.740 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.744 -7.029 0.502 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.063 3.937 3 N -0.251 5.251 4 C 0.028 3.972 5 C -0.270 4.270 6 C 0.349 3.651 7 O -0.443 6.443 8 N -0.353 5.353 9 C 0.025 3.975 10 C 0.050 3.950 11 C -0.180 4.180 12 C -0.180 4.180 13 C -0.568 4.568 14 H 0.065 0.935 15 C -0.171 4.171 16 N -0.537 5.537 17 Si 0.771 3.229 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.203 1.203 21 C 0.082 3.918 22 C -0.162 4.162 23 N -0.251 5.251 24 H 0.124 0.876 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.209 0.791 28 H 0.244 0.756 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.263 -7.548 0.558 18.849 hybrid contribution 2.206 0.638 -0.029 2.297 sum -15.057 -6.910 0.530 16.575 Atomic orbital electron populations 1.20799 0.82480 1.05555 1.05434 1.24356 1.00189 0.82982 0.86123 1.68422 1.09527 1.30371 1.16755 1.23837 0.89797 0.98146 0.85451 1.21530 0.95148 0.97178 1.13148 1.17986 0.86404 0.83996 0.76705 1.90703 1.70290 1.31737 1.51557 1.46024 1.08188 1.08810 1.72298 1.21365 0.77306 0.99154 0.99647 1.18367 0.94121 0.89092 0.93403 1.21690 0.96983 1.02396 0.96939 1.21689 0.97011 1.02436 0.96882 1.21253 0.91884 0.92967 1.50700 0.93476 1.25435 1.01517 0.95413 0.94725 1.69899 1.35887 0.97897 1.50021 0.85841 0.81844 0.76841 0.78418 1.20260 1.21021 1.20267 1.22232 0.89219 0.96140 0.84170 1.21020 1.00089 0.90383 1.04658 1.68355 1.08755 1.30633 1.17335 0.87646 0.88253 0.88138 0.79102 0.75599 0.93580 0.93579 0.94495 0.91900 0.96192 0.96159 0.91910 0.94416 0.93061 0.88998 0.89072 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.31 71.24 0.73 -0.38 16 2 C 0.33 7.36 7.64 138.71 1.06 8.42 16 3 N -0.54 -12.84 10.32 -186.79 -1.93 -14.77 16 4 C 0.19 4.69 10.80 85.07 0.92 5.61 16 5 C -0.26 -7.26 5.91 -19.91 -0.12 -7.38 16 6 C 0.56 18.33 7.72 86.78 0.67 19.00 16 7 O -0.56 -21.18 13.54 -3.90 -0.05 -21.23 16 8 N -0.70 -22.88 4.91 -465.98 -2.29 -25.17 16 9 C 0.15 5.95 4.50 86.38 0.39 6.34 16 10 C 0.05 2.25 0.50 -52.92 -0.03 2.22 16 11 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 12 C -0.12 -5.21 8.08 71.98 0.58 -4.63 16 13 C -0.53 -27.18 8.01 25.60 0.21 -26.97 16 14 H 0.05 2.45 7.74 -2.91 -0.02 2.43 16 15 C 0.03 1.50 5.15 84.65 0.44 1.93 16 16 N -0.90 -46.97 9.35 21.45 0.20 -46.77 16 17 Si 0.94 41.83 29.54 68.60 2.03 43.85 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 C 0.23 6.14 6.86 42.92 0.29 6.44 16 22 C -0.10 -2.54 8.99 71.24 0.64 -1.90 16 23 N -0.53 -13.38 10.26 -175.03 -1.80 -15.17 16 24 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.19 3.65 6.58 -2.91 -0.02 3.63 16 28 H 0.41 11.44 4.34 -92.71 -0.40 11.03 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 1.30 6.86 -2.39 -0.02 1.28 16 32 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 3.01 6.07 -2.39 -0.01 2.99 16 36 H 0.04 1.31 6.86 -2.39 -0.02 1.30 16 37 H 0.26 13.18 8.31 -92.71 -0.77 12.41 16 38 H 0.09 2.17 8.14 -2.38 -0.02 2.16 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.09 2.57 5.97 -2.39 -0.01 2.56 16 Total: -1.00 -59.71 323.87 3.18 -56.52 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.66 Total: 18.66 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 6.37 Total: 4.07 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -5.81 Total: -101.87 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -59.71 3.18 -56.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457994488.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.016 kcal (2) G-P(sol) polarization free energy of solvation -59.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds