Wall clock time and date at job start Mon Mar 30 2020 01:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38669 * 120.41814 * 2 1 4 4 C 1.38629 * 118.42152 * 179.78130 * 3 2 1 5 5 C 1.38229 * 119.15520 * 0.47453 * 4 3 2 6 6 C 1.50710 * 119.61447 * 179.74352 * 5 4 3 7 7 N 1.46502 * 109.46595 * 95.02642 * 6 5 4 8 8 C 1.34784 * 119.99600 * 180.02562 * 7 6 5 9 9 O 1.21583 * 120.00118 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99886 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99876 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46968 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47392 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99411 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00465 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99648 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00024 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46995 * 89.99720 * 17 15 13 19 19 H 1.48508 * 109.46804 * 209.99723 * 17 15 13 20 20 H 1.48495 * 109.47028 * 329.99887 * 17 15 13 21 21 N 1.31848 * 120.76985 * 359.77088 * 5 4 3 22 22 C 1.31889 * 121.72478 * 359.97438 * 21 5 4 23 23 C 1.50695 * 119.62036 * 180.02562 * 22 21 5 24 24 H 1.09002 * 109.47152 * 269.71734 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.71835 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.71815 * 1 2 3 27 27 H 1.08001 * 120.79148 * 0.02947 * 3 2 1 28 28 H 1.08000 * 120.42066 * 180.22857 * 4 3 2 29 29 H 1.09000 * 109.46874 * 215.02149 * 6 5 4 30 30 H 1.08999 * 109.46921 * 335.02670 * 6 5 4 31 31 H 0.96992 * 120.00331 * 0.02562 * 7 6 5 32 32 H 0.97005 * 119.99759 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.46889 * 299.99608 * 11 10 8 34 34 H 1.09002 * 109.47524 * 59.99731 * 11 10 8 35 35 H 1.09006 * 109.47591 * 299.99875 * 12 11 10 36 36 H 1.09003 * 109.47233 * 60.00170 * 12 11 10 37 37 H 0.97007 * 120.00128 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.46664 * 269.97784 * 23 22 21 39 39 H 1.09000 * 109.46940 * 29.97482 * 23 22 21 40 40 H 1.08996 * 109.47332 * 149.97748 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 0.0047 5 6 4.2255 -0.0823 -0.0009 6 6 5.7313 -0.1469 -0.0018 7 7 6.2144 -0.2946 1.3734 8 6 7.5375 -0.3735 1.6179 9 8 8.3300 -0.3225 0.6973 10 7 7.9820 -0.5099 2.8829 11 6 9.4201 -0.5962 3.1487 12 6 9.6526 -0.7451 4.6535 13 6 11.1319 -0.8345 4.9269 14 1 11.8358 -0.7900 4.1090 15 6 11.5866 -0.9742 6.2210 16 7 10.7294 -1.0289 7.2169 17 14 13.4204 -1.0842 6.5599 18 1 13.9660 0.2794 6.7790 19 1 13.6510 -1.9104 7.7722 20 1 14.1018 -1.7092 5.3979 21 7 3.5255 -1.1996 -0.0060 22 6 2.2066 -1.1917 -0.0054 23 6 1.4539 -2.4971 -0.0108 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3633 0.8925 -0.5095 27 1 1.6890 2.1423 0.0005 28 1 4.1735 2.0592 0.0085 29 1 6.0579 -1.0007 -0.5953 30 1 6.1339 0.7701 -0.4319 31 1 5.5822 -0.3357 2.1078 32 1 7.3497 -0.5510 3.6174 33 1 9.8343 -1.4604 2.6294 34 1 9.9103 0.3104 2.7936 35 1 9.2384 0.1193 5.1726 36 1 9.1624 -1.6515 5.0090 37 1 11.0493 -1.1276 8.1273 38 1 1.2718 -2.8072 -1.0398 39 1 2.0439 -3.2587 0.4992 40 1 0.5018 -2.3697 0.5042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458653526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:59 Heat of formation + Delta-G solvation = -16.066846 kcal Electronic energy + Delta-G solvation = -20102.418289 eV Core-core repulsion = 16916.395988 eV Total energy + Delta-G solvation = -3186.022301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83885 -39.41205 -35.71178 -34.65713 -33.53439 -33.25438 -32.72662 -29.82168 -28.76785 -28.25480 -25.25738 -24.20566 -22.75961 -21.51930 -20.98627 -20.50372 -18.16764 -17.03322 -16.44754 -16.26591 -15.66182 -15.19373 -15.06768 -14.96044 -14.47854 -13.95055 -13.81567 -13.60052 -13.33654 -13.28417 -13.06623 -12.85284 -12.57735 -12.43609 -12.36405 -12.24402 -11.64970 -11.15007 -11.00288 -10.60204 -10.27724 -10.04366 -9.92975 -9.71610 -9.53283 -9.24180 -9.00074 -8.97697 -8.45063 -8.19693 -6.06129 -4.08536 0.67310 0.95525 3.00066 3.32061 3.37953 3.42630 3.55830 3.64150 3.85792 4.32898 4.36380 4.43138 4.55269 4.58957 4.77340 5.00661 5.12799 5.13237 5.22660 5.27227 5.29938 5.30996 5.45829 5.52275 5.66662 5.77521 5.85463 5.96016 6.34066 6.38643 6.44877 6.59270 6.82458 7.05371 7.27537 7.60940 7.67602 7.72130 7.93406 8.29664 8.47760 8.96445 9.04399 9.56011 11.05620 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035460 B = 0.002514 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.429011 B =11137.126763 C =11385.930945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.136 4.136 3 C -0.076 4.076 4 C -0.155 4.155 5 C 0.111 3.889 6 C 0.195 3.805 7 N -0.747 5.747 8 C 0.701 3.299 9 O -0.598 6.598 10 N -0.738 5.738 11 C 0.140 3.860 12 C 0.013 3.987 13 C -0.520 4.520 14 H 0.060 0.940 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 N -0.465 5.465 22 C 0.127 3.873 23 C -0.107 4.107 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.136 0.864 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.394 0.606 32 H 0.393 0.607 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.966 2.975 -13.825 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.138 4.138 3 C -0.102 4.102 4 C -0.175 4.175 5 C -0.028 4.028 6 C 0.070 3.930 7 N -0.404 5.404 8 C 0.401 3.599 9 O -0.477 6.477 10 N -0.391 5.391 11 C 0.018 3.982 12 C -0.025 4.025 13 C -0.558 4.558 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 N -0.174 5.174 22 C -0.012 4.012 23 C -0.164 4.164 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.154 0.846 28 H 0.156 0.844 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.227 0.773 32 H 0.226 0.774 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.733 2.194 -14.497 27.051 hybrid contribution -0.083 0.813 1.022 1.309 sum -22.816 3.007 -13.474 26.668 Atomic orbital electron populations 1.20787 0.90183 1.03216 1.02722 1.20781 0.97576 0.93656 1.01753 1.21496 0.93935 0.98169 0.96566 1.22029 0.95160 0.99106 1.01215 1.21224 0.96118 0.88523 0.96901 1.19829 0.85906 1.03300 0.84015 1.45002 1.05974 1.81104 1.08303 1.16003 0.81771 0.78051 0.84113 1.90889 1.54505 1.58616 1.43641 1.45519 1.10249 1.77727 1.05636 1.21592 0.76241 1.00574 0.99838 1.19329 0.97617 0.97700 0.87853 1.21063 0.91553 1.50502 0.92714 0.92192 1.25000 0.98069 0.95087 0.96208 1.69960 1.33977 1.50148 0.99336 0.86506 0.85124 0.78067 0.77820 1.20580 1.21206 1.19706 1.67356 1.07605 1.31092 1.11387 1.21182 0.89447 0.95133 0.95427 1.20762 0.99274 0.93214 1.03122 0.90738 0.90870 0.91297 0.84649 0.84379 0.90015 0.90118 0.77252 0.77404 0.92744 0.92762 0.95991 0.95963 0.92892 0.90356 0.90224 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 9.21 36.01 0.33 -0.21 16 2 C -0.14 -1.07 5.90 -104.48 -0.62 -1.69 16 3 C -0.08 -0.59 9.86 -39.28 -0.39 -0.97 16 4 C -0.15 -1.39 9.72 -39.44 -0.38 -1.78 16 5 C 0.11 1.23 6.15 -82.58 -0.51 0.73 16 6 C 0.19 2.46 5.98 -5.19 -0.03 2.43 16 7 N -0.75 -10.48 5.55 -66.41 -0.37 -10.85 16 8 C 0.70 12.89 8.57 -86.91 -0.74 12.15 16 9 O -0.60 -13.28 16.34 5.29 0.09 -13.19 16 10 N -0.74 -13.66 5.56 -65.23 -0.36 -14.03 16 11 C 0.14 3.11 5.61 -4.05 -0.02 3.09 16 12 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 13 C -0.52 -14.65 9.11 -34.44 -0.31 -14.97 16 14 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 17 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 N -0.46 -5.54 10.19 -5.74 -0.06 -5.60 16 22 C 0.13 1.22 6.78 -82.59 -0.56 0.66 16 23 C -0.11 -0.74 9.36 36.00 0.34 -0.40 16 24 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.07 0.29 6.72 -51.93 -0.35 -0.06 16 26 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 27 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 28 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 31 H 0.39 4.76 8.48 -40.82 -0.35 4.41 16 32 H 0.39 6.33 8.49 -40.82 -0.35 5.98 16 33 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.37 6.69 -51.93 -0.35 0.03 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -33.99 342.40 -8.96 -42.96 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.00 Total: 3.91 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -3.14 Total: 0.76 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.05 Total: -56.22 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.99 -8.96 -42.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458653526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.889 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds