Wall clock time and date at job start Mon Mar 30 2020 01:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38669 * 120.41814 * 2 1 4 4 C 1.38629 * 118.42152 * 179.78130 * 3 2 1 5 5 C 1.38229 * 119.15520 * 0.47453 * 4 3 2 6 6 C 1.50710 * 119.61447 * 179.74352 * 5 4 3 7 7 N 1.46502 * 109.46595 * 95.02642 * 6 5 4 8 8 C 1.34784 * 119.99600 * 180.02562 * 7 6 5 9 9 O 1.21583 * 120.00118 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99886 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99876 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46968 * 179.97438 * 11 10 8 13 13 C 1.50703 * 109.47392 * 179.97438 * 12 11 10 14 14 H 1.08007 * 119.99411 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00465 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99648 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00024 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46995 * 89.99720 * 17 15 13 19 19 H 1.48508 * 109.46804 * 209.99723 * 17 15 13 20 20 H 1.48495 * 109.47028 * 329.99887 * 17 15 13 21 21 N 1.31848 * 120.76985 * 359.77088 * 5 4 3 22 22 C 1.31889 * 121.72478 * 359.97438 * 21 5 4 23 23 C 1.50695 * 119.62036 * 180.02562 * 22 21 5 24 24 H 1.09002 * 109.47152 * 269.71734 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.71835 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.71815 * 1 2 3 27 27 H 1.08001 * 120.79148 * 0.02947 * 3 2 1 28 28 H 1.08000 * 120.42066 * 180.22857 * 4 3 2 29 29 H 1.09000 * 109.46874 * 215.02149 * 6 5 4 30 30 H 1.08999 * 109.46921 * 335.02670 * 6 5 4 31 31 H 0.96992 * 120.00331 * 0.02562 * 7 6 5 32 32 H 0.97005 * 119.99759 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.46889 * 299.99608 * 11 10 8 34 34 H 1.09002 * 109.47524 * 59.99731 * 11 10 8 35 35 H 1.09006 * 109.47591 * 299.99875 * 12 11 10 36 36 H 1.09003 * 109.47233 * 60.00170 * 12 11 10 37 37 H 0.97007 * 120.00128 * 179.97438 * 16 15 13 38 38 H 1.09006 * 109.46664 * 269.97784 * 23 22 21 39 39 H 1.09000 * 109.46940 * 29.97482 * 23 22 21 40 40 H 1.08996 * 109.47332 * 149.97748 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 0.0047 5 6 4.2255 -0.0823 -0.0009 6 6 5.7313 -0.1469 -0.0018 7 7 6.2144 -0.2946 1.3734 8 6 7.5375 -0.3735 1.6179 9 8 8.3300 -0.3225 0.6973 10 7 7.9820 -0.5099 2.8829 11 6 9.4201 -0.5962 3.1487 12 6 9.6526 -0.7451 4.6535 13 6 11.1319 -0.8345 4.9269 14 1 11.8358 -0.7900 4.1090 15 6 11.5866 -0.9742 6.2210 16 7 10.7294 -1.0289 7.2169 17 14 13.4204 -1.0842 6.5599 18 1 13.9660 0.2794 6.7790 19 1 13.6510 -1.9104 7.7722 20 1 14.1018 -1.7092 5.3979 21 7 3.5255 -1.1996 -0.0060 22 6 2.2066 -1.1917 -0.0054 23 6 1.4539 -2.4971 -0.0108 24 1 -0.3633 -0.0051 1.0277 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3633 0.8925 -0.5095 27 1 1.6890 2.1423 0.0005 28 1 4.1735 2.0592 0.0085 29 1 6.0579 -1.0007 -0.5953 30 1 6.1339 0.7701 -0.4319 31 1 5.5822 -0.3357 2.1078 32 1 7.3497 -0.5510 3.6174 33 1 9.8343 -1.4604 2.6294 34 1 9.9103 0.3104 2.7936 35 1 9.2384 0.1193 5.1726 36 1 9.1624 -1.6515 5.0090 37 1 11.0493 -1.1276 8.1273 38 1 1.2718 -2.8072 -1.0398 39 1 2.0439 -3.2587 0.4992 40 1 0.5018 -2.3697 0.5042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458653526.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:58 Heat of formation + Delta-G solvation = -39.895296 kcal Electronic energy + Delta-G solvation = -20103.451568 eV Core-core repulsion = 16916.395988 eV Total energy + Delta-G solvation = -3187.055580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59877 -40.83996 -36.96248 -36.21718 -34.85411 -34.35634 -33.93692 -31.58297 -29.41791 -29.22744 -26.75585 -25.46717 -23.43444 -22.94264 -22.18963 -22.01076 -19.60138 -18.43068 -17.79584 -17.48390 -16.71112 -16.59468 -16.47123 -15.81418 -15.73432 -15.24521 -15.17919 -15.06835 -14.29091 -14.27005 -13.80313 -13.69599 -13.60107 -13.41085 -13.21532 -13.19739 -12.93209 -12.92027 -12.51774 -12.22972 -12.21583 -11.69561 -11.52066 -11.25782 -10.68058 -10.60440 -10.44464 -10.37538 -9.75790 -9.67604 -8.23575 -6.33878 -0.03046 0.30127 1.42317 1.43222 1.54656 1.75696 2.13722 2.41730 2.73683 3.09645 3.11234 3.41649 3.64035 3.82365 3.99380 4.01734 4.31632 4.44724 4.50084 4.53229 4.61410 4.68647 4.72068 4.76921 4.84164 4.85760 4.87063 5.15323 5.19498 5.21920 5.30137 5.35884 5.37704 5.51248 5.59694 5.77245 5.79128 5.98166 6.17495 6.79328 7.00662 7.06858 7.35358 7.55258 8.88524 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035460 B = 0.002514 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.429011 B =11137.126763 C =11385.930945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.131 4.131 3 C -0.078 4.078 4 C -0.154 4.154 5 C 0.090 3.910 6 C 0.198 3.802 7 N -0.727 5.727 8 C 0.701 3.299 9 O -0.637 6.637 10 N -0.733 5.733 11 C 0.160 3.840 12 C 0.024 3.976 13 C -0.546 4.546 14 H 0.060 0.940 15 C 0.006 3.994 16 N -0.928 5.928 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.266 1.266 21 N -0.498 5.498 22 C 0.106 3.894 23 C -0.105 4.105 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.166 0.834 28 H 0.153 0.847 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.406 0.594 32 H 0.406 0.594 33 H 0.043 0.957 34 H 0.046 0.954 35 H 0.009 0.991 36 H 0.007 0.993 37 H 0.266 0.734 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.504 3.757 -14.027 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.133 4.133 3 C -0.103 4.103 4 C -0.175 4.175 5 C -0.048 4.048 6 C 0.073 3.927 7 N -0.383 5.383 8 C 0.401 3.599 9 O -0.519 6.519 10 N -0.387 5.387 11 C 0.036 3.964 12 C -0.014 4.014 13 C -0.584 4.584 14 H 0.078 0.922 15 C -0.193 4.193 16 N -0.567 5.567 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.191 1.191 21 N -0.208 5.208 22 C -0.033 4.033 23 C -0.162 4.162 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.183 0.817 28 H 0.171 0.829 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.241 0.759 32 H 0.241 0.759 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.026 0.974 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.332 2.980 -14.695 28.582 hybrid contribution 0.255 0.570 1.054 1.225 sum -24.078 3.551 -13.642 27.901 Atomic orbital electron populations 1.20879 0.87733 1.04515 1.03696 1.21175 0.99331 0.93028 0.99736 1.21888 0.93433 0.99482 0.95500 1.22201 0.96123 0.98666 1.00461 1.20973 0.94944 0.89485 0.99350 1.19840 0.87589 1.02703 0.82570 1.44854 1.04470 1.79411 1.09608 1.16072 0.82803 0.77738 0.83282 1.90861 1.55942 1.60374 1.44674 1.45219 1.09106 1.77948 1.06448 1.21097 0.78276 0.99637 0.97374 1.19132 0.96352 0.96246 0.89646 1.21472 0.92956 1.50840 0.93154 0.92203 1.25890 1.02985 0.94470 0.95937 1.70064 1.36152 1.50690 0.99821 0.85422 0.79218 0.78431 0.77838 1.19665 1.20514 1.19068 1.67265 1.09098 1.31886 1.12545 1.21653 0.88943 0.96926 0.95774 1.20827 0.99741 0.91766 1.03833 0.89715 0.89860 0.89820 0.81669 0.82945 0.91945 0.89479 0.75864 0.75893 0.93866 0.93526 0.97238 0.97449 0.92543 0.89484 0.91580 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 9.21 71.24 0.66 -0.04 16 2 C -0.13 -1.76 5.90 -19.77 -0.12 -1.87 16 3 C -0.08 -1.00 9.86 22.47 0.22 -0.78 16 4 C -0.15 -2.54 9.72 22.36 0.22 -2.33 16 5 C 0.09 1.98 6.15 42.56 0.26 2.24 16 6 C 0.20 5.06 5.98 85.64 0.51 5.58 16 7 N -0.73 -20.37 5.55 -482.27 -2.68 -23.05 16 8 C 0.70 26.00 8.57 179.05 1.53 27.53 16 9 O -0.64 -28.76 16.34 -3.98 -0.06 -28.83 16 10 N -0.73 -27.32 5.56 -478.55 -2.66 -29.98 16 11 C 0.16 7.23 5.61 86.38 0.48 7.71 16 12 C 0.02 1.23 5.09 29.85 0.15 1.38 16 13 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.01 0.33 5.46 84.65 0.46 0.79 16 16 N -0.93 -55.10 13.29 21.45 0.28 -54.81 16 17 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 N -0.50 -11.83 10.19 -172.07 -1.75 -13.58 16 22 C 0.11 1.91 6.78 42.54 0.29 2.20 16 23 C -0.10 -1.32 9.36 71.23 0.67 -0.66 16 24 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.08 0.38 6.72 -2.39 -0.02 0.36 16 26 H 0.08 0.32 8.09 -2.38 -0.02 0.30 16 27 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 28 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 2.10 8.04 -2.39 -0.02 2.08 16 31 H 0.41 9.60 8.48 -92.71 -0.79 8.81 16 32 H 0.41 13.02 8.49 -92.70 -0.79 12.24 16 33 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 38 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 0.75 6.69 -2.39 -0.02 0.73 16 Total: -1.00 -73.43 342.40 0.21 -73.22 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -0.52 Total: 19.86 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 5.57 Total: 10.93 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -6.81 Total: -121.42 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.06 Total: -28.83 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -73.43 0.21 -73.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458653526.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.330 kcal (2) G-P(sol) polarization free energy of solvation -73.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds