Wall clock time and date at job start Mon Mar 30 2020 01:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38664 * 120.42250 * 2 1 4 4 C 1.38627 * 118.42336 * 180.24315 * 3 2 1 5 5 C 1.38227 * 119.15978 * 359.74843 * 4 3 2 6 6 N 1.31850 * 120.76559 * 359.97438 * 5 4 3 7 7 C 1.31892 * 121.72477 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.61604 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47242 * 89.99872 * 8 7 6 10 10 C 1.53006 * 109.47127 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.46883 * 180.02562 * 10 9 8 12 12 C 1.34775 * 119.99531 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00042 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00474 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47456 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99789 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00306 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99911 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00219 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47003 * 89.99688 * 20 18 16 22 22 H 1.48502 * 109.47021 * 209.99386 * 20 18 16 23 23 H 1.48491 * 109.46889 * 329.99714 * 20 18 16 24 24 H 1.09003 * 109.47253 * 270.25259 * 1 2 3 25 25 H 1.09003 * 109.47024 * 30.25444 * 1 2 3 26 26 H 1.08995 * 109.47020 * 150.25529 * 1 2 3 27 27 H 1.08004 * 120.78639 * 359.96137 * 3 2 1 28 28 H 1.07999 * 120.42286 * 179.72723 * 4 3 2 29 29 H 1.08001 * 119.61952 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47390 * 329.99842 * 8 7 6 31 31 H 1.09001 * 109.46948 * 209.99484 * 8 7 6 32 32 H 1.09001 * 109.47502 * 60.00161 * 9 8 7 33 33 H 1.09001 * 109.47289 * 299.99957 * 9 8 7 34 34 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 35 35 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 36 36 H 0.96992 * 119.99966 * 359.97438 * 11 10 9 37 37 H 0.96998 * 119.99765 * 0.02562 * 14 12 11 38 38 H 1.08999 * 109.47307 * 300.01227 * 15 14 12 39 39 H 1.09007 * 109.46632 * 60.00564 * 15 14 12 40 40 H 0.96995 * 120.00330 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1474 -0.0052 5 6 4.2256 -0.0825 -0.0048 6 7 3.5255 -1.1997 0.0009 7 6 2.2066 -1.1917 0.0059 8 6 1.4539 -2.4972 0.0117 9 6 1.2047 -2.9359 1.4561 10 6 0.4411 -4.2617 1.4619 11 7 0.2020 -4.6814 2.8451 12 6 -0.4590 -5.8287 3.0964 13 8 -0.8564 -6.5157 2.1752 14 7 -0.6786 -6.2152 4.3687 15 6 -1.3975 -7.4620 4.6420 16 6 -1.5093 -7.6614 6.1315 17 1 -1.0874 -6.9321 6.8071 18 6 -2.1501 -8.7749 6.6319 19 7 -2.6644 -9.6628 5.8091 20 14 -2.2880 -9.0224 8.4782 21 1 -3.5374 -8.3885 8.9707 22 1 -2.3174 -10.4758 8.7820 23 1 -1.1191 -8.3999 9.1497 24 1 -0.3634 0.0045 1.0277 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3633 -0.8922 -0.5098 27 1 1.6890 2.1423 -0.0006 28 1 4.1736 2.0590 -0.0098 29 1 5.3046 -0.1288 -0.0084 30 1 2.0414 -3.2576 -0.5027 31 1 0.4994 -2.3686 -0.4987 32 1 0.6171 -2.1755 1.9706 33 1 2.1592 -3.0645 1.9666 34 1 -0.5134 -4.1335 0.9514 35 1 1.0290 -5.0219 0.9477 36 1 0.5193 -4.1335 3.5798 37 1 -0.3612 -5.6673 5.1036 38 1 -2.3955 -7.4089 4.2069 39 1 -0.8538 -8.2986 4.2029 40 1 -3.1156 -10.4460 6.1611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458720255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:27 Heat of formation + Delta-G solvation = -17.258474 kcal Electronic energy + Delta-G solvation = -20038.089599 eV Core-core repulsion = 16852.015625 eV Total energy + Delta-G solvation = -3186.073974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70264 -39.12537 -36.03485 -34.20703 -33.92521 -33.41892 -32.26041 -30.86253 -27.92712 -27.22966 -25.92005 -23.16744 -22.57868 -21.98913 -21.34686 -20.03717 -17.95056 -17.18850 -16.80287 -16.05009 -15.65320 -15.47140 -15.13310 -14.78080 -14.56712 -14.25225 -13.80651 -13.45466 -13.25148 -13.20909 -13.06997 -12.91858 -12.48121 -12.18344 -11.94725 -11.91208 -11.64806 -11.28051 -10.93669 -10.89810 -10.81169 -10.26980 -10.03714 -9.70396 -9.37215 -9.33183 -9.07327 -8.72917 -8.62129 -7.70203 -6.11996 -4.18368 0.77335 0.95638 3.26936 3.30969 3.34089 3.37642 3.54232 4.00087 4.02279 4.33610 4.36359 4.46249 4.56524 4.67808 4.91281 4.92591 4.99759 5.09648 5.23161 5.23939 5.27279 5.29783 5.44866 5.46573 5.57459 5.65451 5.80537 5.86223 5.93594 6.10981 6.13300 6.41719 6.93459 7.17749 7.56811 7.60166 7.61880 7.72098 7.95799 8.09137 8.80868 9.00137 9.38560 9.53026 10.98309 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037265 B = 0.002388 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.204057 B =11721.776370 C =11880.991246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.133 4.133 3 C -0.077 4.077 4 C -0.177 4.177 5 C 0.094 3.906 6 N -0.478 5.478 7 C 0.134 3.866 8 C -0.072 4.072 9 C -0.121 4.121 10 C 0.143 3.857 11 N -0.759 5.759 12 C 0.692 3.308 13 O -0.602 6.602 14 N -0.731 5.731 15 C 0.267 3.733 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.391 0.609 37 H 0.386 0.614 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.571 23.938 -11.097 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.135 4.135 3 C -0.103 4.103 4 C -0.197 4.197 5 C -0.063 4.063 6 N -0.186 5.186 7 C -0.004 4.004 8 C -0.110 4.110 9 C -0.159 4.159 10 C 0.018 3.982 11 N -0.416 5.416 12 C 0.392 3.608 13 O -0.481 6.481 14 N -0.383 5.383 15 C 0.145 3.855 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.172 0.828 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.223 0.777 37 H 0.218 0.782 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.515 22.255 -11.956 27.364 hybrid contribution -0.101 1.297 1.691 2.134 sum 10.414 23.551 -10.264 27.722 Atomic orbital electron populations 1.20857 0.90074 1.03376 1.03020 1.20769 0.97710 0.93557 1.01445 1.21489 0.94194 0.98087 0.96554 1.22123 0.95306 0.99639 1.02613 1.22744 1.00312 0.87672 0.95595 1.67531 1.07790 1.31500 1.11810 1.21128 0.89632 0.94759 0.94876 1.20516 0.99768 0.92988 0.97734 1.21688 1.01191 0.96940 0.96098 1.21024 0.99561 0.94588 0.83070 1.45140 1.63377 1.25091 1.08001 1.16155 0.79239 0.80926 0.84501 1.90868 1.57620 1.55571 1.44048 1.45713 1.60815 1.27609 1.04137 1.18972 0.91496 0.79303 0.95685 1.21232 1.37925 1.07685 0.91095 0.91979 1.24950 0.95075 0.95511 0.98558 1.69981 1.36426 1.11296 1.34608 0.86411 0.78483 0.77430 0.84536 1.20505 1.21026 1.19803 0.90549 0.91412 0.90441 0.84957 0.84927 0.82837 0.89438 0.89430 0.91332 0.90920 0.91938 0.91823 0.77656 0.78213 0.95776 0.95752 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 9.62 36.01 0.35 -0.38 16 2 C -0.13 -1.09 5.90 -104.48 -0.62 -1.71 16 3 C -0.08 -0.55 9.86 -39.28 -0.39 -0.94 16 4 C -0.18 -1.23 10.11 -39.44 -0.40 -1.63 16 5 C 0.09 0.80 11.18 -17.55 -0.20 0.60 16 6 N -0.48 -5.18 10.27 -9.47 -0.10 -5.28 16 7 C 0.13 1.31 6.03 -82.59 -0.50 0.81 16 8 C -0.07 -0.64 5.11 -27.89 -0.14 -0.79 16 9 C -0.12 -1.16 5.31 -26.73 -0.14 -1.30 16 10 C 0.14 1.85 5.67 -4.04 -0.02 1.82 16 11 N -0.76 -11.62 5.56 -65.22 -0.36 -11.98 16 12 C 0.69 14.75 8.57 -86.92 -0.74 14.00 16 13 O -0.60 -15.49 16.34 5.29 0.09 -15.41 16 14 N -0.73 -16.09 5.55 -66.41 -0.37 -16.46 16 15 C 0.27 7.30 5.43 -5.19 -0.03 7.27 16 16 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 20 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 26 H 0.08 0.46 5.95 -51.93 -0.31 0.16 16 27 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 28 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 29 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.66 5.93 -51.93 -0.31 0.35 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.39 4.80 8.49 -40.82 -0.35 4.46 16 37 H 0.39 7.25 8.34 -40.82 -0.34 6.91 16 38 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 341.42 15.07 5.15 5.15 Total: -1.00 -35.08 341.42 -9.04 -44.12 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.91 Total: 5.38 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -3.25 Total: 4.14 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.09 Total: -59.46 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.09 Total: -15.41 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.08 -9.04 -44.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458720255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.859 kcal (2) G-P(sol) polarization free energy of solvation -35.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds