Wall clock time and date at job start Mon Mar 30 2020 01:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38664 * 120.42250 * 2 1 4 4 C 1.38627 * 118.42336 * 180.24315 * 3 2 1 5 5 C 1.38227 * 119.15978 * 359.74843 * 4 3 2 6 6 N 1.31850 * 120.76559 * 359.97438 * 5 4 3 7 7 C 1.31892 * 121.72477 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.61604 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47242 * 89.99872 * 8 7 6 10 10 C 1.53006 * 109.47127 * 180.02562 * 9 8 7 11 11 N 1.46504 * 109.46883 * 180.02562 * 10 9 8 12 12 C 1.34775 * 119.99531 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00042 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00068 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00474 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47456 * 180.02562 * 15 14 12 17 17 H 1.08000 * 119.99789 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00306 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99911 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00219 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47003 * 89.99688 * 20 18 16 22 22 H 1.48502 * 109.47021 * 209.99386 * 20 18 16 23 23 H 1.48491 * 109.46889 * 329.99714 * 20 18 16 24 24 H 1.09003 * 109.47253 * 270.25259 * 1 2 3 25 25 H 1.09003 * 109.47024 * 30.25444 * 1 2 3 26 26 H 1.08995 * 109.47020 * 150.25529 * 1 2 3 27 27 H 1.08004 * 120.78639 * 359.96137 * 3 2 1 28 28 H 1.07999 * 120.42286 * 179.72723 * 4 3 2 29 29 H 1.08001 * 119.61952 * 180.02562 * 5 4 3 30 30 H 1.08996 * 109.47390 * 329.99842 * 8 7 6 31 31 H 1.09001 * 109.46948 * 209.99484 * 8 7 6 32 32 H 1.09001 * 109.47502 * 60.00161 * 9 8 7 33 33 H 1.09001 * 109.47289 * 299.99957 * 9 8 7 34 34 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 35 35 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 36 36 H 0.96992 * 119.99966 * 359.97438 * 11 10 9 37 37 H 0.96998 * 119.99765 * 0.02562 * 14 12 11 38 38 H 1.08999 * 109.47307 * 300.01227 * 15 14 12 39 39 H 1.09007 * 109.46632 * 60.00564 * 15 14 12 40 40 H 0.96995 * 120.00330 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1957 0.0000 4 6 3.5946 1.1474 -0.0052 5 6 4.2256 -0.0825 -0.0048 6 7 3.5255 -1.1997 0.0009 7 6 2.2066 -1.1917 0.0059 8 6 1.4539 -2.4972 0.0117 9 6 1.2047 -2.9359 1.4561 10 6 0.4411 -4.2617 1.4619 11 7 0.2020 -4.6814 2.8451 12 6 -0.4590 -5.8287 3.0964 13 8 -0.8564 -6.5157 2.1752 14 7 -0.6786 -6.2152 4.3687 15 6 -1.3975 -7.4620 4.6420 16 6 -1.5093 -7.6614 6.1315 17 1 -1.0874 -6.9321 6.8071 18 6 -2.1501 -8.7749 6.6319 19 7 -2.6644 -9.6628 5.8091 20 14 -2.2880 -9.0224 8.4782 21 1 -3.5374 -8.3885 8.9707 22 1 -2.3174 -10.4758 8.7820 23 1 -1.1191 -8.3999 9.1497 24 1 -0.3634 0.0045 1.0277 25 1 -0.3633 0.8877 -0.5178 26 1 -0.3633 -0.8922 -0.5098 27 1 1.6890 2.1423 -0.0006 28 1 4.1736 2.0590 -0.0098 29 1 5.3046 -0.1288 -0.0084 30 1 2.0414 -3.2576 -0.5027 31 1 0.4994 -2.3686 -0.4987 32 1 0.6171 -2.1755 1.9706 33 1 2.1592 -3.0645 1.9666 34 1 -0.5134 -4.1335 0.9514 35 1 1.0290 -5.0219 0.9477 36 1 0.5193 -4.1335 3.5798 37 1 -0.3612 -5.6673 5.1036 38 1 -2.3955 -7.4089 4.2069 39 1 -0.8538 -8.2986 4.2029 40 1 -3.1156 -10.4460 6.1611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458720255.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:26 Heat of formation + Delta-G solvation = -42.558204 kcal Electronic energy + Delta-G solvation = -20039.186678 eV Core-core repulsion = 16852.015625 eV Total energy + Delta-G solvation = -3187.171053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31279 -40.81937 -37.15538 -36.04816 -34.94276 -34.38343 -34.09862 -31.79591 -29.34943 -28.27389 -27.00391 -24.70185 -23.57021 -22.97783 -22.18904 -21.68291 -19.71436 -18.02681 -17.80569 -17.57868 -17.09484 -16.73159 -16.41968 -15.80766 -15.64645 -15.41686 -15.17957 -14.89575 -14.20494 -14.09454 -14.01529 -13.87934 -13.67851 -13.47061 -13.22277 -12.95345 -12.84102 -12.70114 -12.64819 -12.21207 -12.04819 -11.65515 -11.46284 -11.25155 -10.79210 -10.61125 -10.31866 -10.25059 -9.67251 -9.56251 -8.27072 -6.43555 0.18749 0.38779 1.44215 1.47251 1.58229 1.91959 2.26528 2.40846 2.85160 3.07706 3.35514 3.59097 3.73455 3.96190 3.99480 4.13784 4.16749 4.18417 4.28445 4.57446 4.64308 4.68313 4.75889 4.82579 4.86264 4.95938 5.08470 5.11911 5.17313 5.28618 5.30665 5.34100 5.43391 5.50400 5.56995 5.69952 5.86666 5.87203 6.28972 6.68306 7.11192 7.25736 7.33687 7.74460 8.85365 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037265 B = 0.002388 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.204057 B =11721.776370 C =11880.991246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.139 4.139 3 C -0.083 4.083 4 C -0.172 4.172 5 C 0.075 3.925 6 N -0.512 5.512 7 C 0.111 3.889 8 C -0.068 4.068 9 C -0.102 4.102 10 C 0.141 3.859 11 N -0.733 5.733 12 C 0.689 3.311 13 O -0.650 6.650 14 N -0.724 5.724 15 C 0.285 3.715 16 C -0.554 4.554 17 H 0.084 0.916 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.987 3.013 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.256 1.256 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.158 0.842 28 H 0.161 0.839 29 H 0.170 0.830 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.410 0.590 37 H 0.405 0.595 38 H -0.014 1.014 39 H -0.015 1.015 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.162 26.658 -9.627 30.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.141 4.141 3 C -0.109 4.109 4 C -0.192 4.192 5 C -0.082 4.082 6 N -0.221 5.221 7 C -0.026 4.026 8 C -0.107 4.107 9 C -0.140 4.140 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.389 3.611 13 O -0.533 6.533 14 N -0.378 5.378 15 C 0.161 3.839 16 C -0.592 4.592 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.810 3.190 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.180 1.180 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.176 0.824 28 H 0.179 0.821 29 H 0.187 0.813 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.246 0.754 37 H 0.240 0.760 38 H 0.004 0.996 39 H 0.002 0.998 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.156 25.062 -10.476 29.365 hybrid contribution -0.230 0.535 1.124 1.266 sum 10.926 25.597 -9.353 29.361 Atomic orbital electron populations 1.20901 0.88822 1.04112 1.03459 1.21008 0.98712 0.93430 1.00902 1.21880 0.94507 0.98792 0.95723 1.22455 0.95634 1.00098 1.00964 1.23142 1.01255 0.87892 0.95869 1.67477 1.08593 1.33033 1.13015 1.21198 0.89641 0.95361 0.96399 1.20470 1.00325 0.92833 0.97054 1.21514 1.00465 0.95091 0.96946 1.21192 0.99829 0.95975 0.81313 1.44929 1.61237 1.23022 1.09881 1.16341 0.79301 0.81957 0.83496 1.90835 1.59610 1.57512 1.45342 1.45305 1.60700 1.26462 1.05334 1.18412 0.89422 0.80279 0.95757 1.21600 1.38094 1.08422 0.91119 0.89833 1.26084 0.94270 0.94957 1.04402 1.70146 1.37305 1.12054 1.37442 0.85125 0.79215 0.77334 0.77321 1.19518 1.20960 1.17985 0.90139 0.89962 0.90484 0.82425 0.82143 0.81253 0.90601 0.88069 0.89778 0.91360 0.92055 0.93148 0.75387 0.76008 0.99601 0.99753 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.62 71.24 0.69 -0.51 16 2 C -0.14 -2.03 5.90 -19.77 -0.12 -2.14 16 3 C -0.08 -0.98 9.86 22.46 0.22 -0.76 16 4 C -0.17 -1.99 10.11 22.36 0.23 -1.77 16 5 C 0.08 1.19 11.18 84.69 0.95 2.14 16 6 N -0.51 -10.86 10.27 -183.88 -1.89 -12.75 16 7 C 0.11 2.08 6.03 42.54 0.26 2.34 16 8 C -0.07 -1.19 5.11 29.85 0.15 -1.04 16 9 C -0.10 -1.84 5.31 30.60 0.16 -1.67 16 10 C 0.14 3.59 5.67 86.38 0.49 4.08 16 11 N -0.73 -21.84 5.56 -478.52 -2.66 -24.50 16 12 C 0.69 29.71 8.57 179.06 1.53 31.24 16 13 O -0.65 -34.65 16.34 -4.00 -0.07 -34.72 16 14 N -0.72 -32.13 5.55 -482.29 -2.68 -34.81 16 15 C 0.28 16.15 5.43 85.63 0.46 16.61 16 16 C -0.55 -30.69 9.28 25.60 0.24 -30.46 16 17 H 0.08 4.17 7.60 -2.91 -0.02 4.14 16 18 C 0.00 0.13 5.46 84.65 0.46 0.59 16 19 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 20 Si 0.99 42.71 29.54 68.60 2.03 44.74 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.60 8.10 -2.39 -0.02 0.58 16 26 H 0.08 0.79 5.95 -2.39 -0.01 0.77 16 27 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 28 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 29 H 0.17 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.10 1.43 5.93 -2.39 -0.01 1.41 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.41 9.25 8.49 -92.71 -0.79 8.46 16 37 H 0.40 14.72 8.34 -92.71 -0.77 13.95 16 38 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -78.49 341.42 0.24 -78.25 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.50 Total: 21.74 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 5.72 Total: 18.66 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -6.94 Total: -128.67 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.07 Total: -34.72 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -78.49 0.24 -78.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458720255.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.696 kcal (2) G-P(sol) polarization free energy of solvation -78.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds