Wall clock time and date at job start Mon Mar 30 2020 01:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38388 * 120.44673 * 2 1 4 4 C 1.38816 * 118.49294 * 179.76118 * 3 2 1 5 5 C 1.38100 * 119.30813 * 0.51590 * 4 3 2 6 6 N 1.31918 * 120.85141 * 359.72904 * 5 4 3 7 7 C 1.32384 * 121.63141 * 0.02562 * 6 5 4 8 8 N 1.39391 * 119.69149 * 180.02562 * 7 6 5 9 9 C 1.34776 * 120.00508 * 359.97438 * 8 7 6 10 10 O 1.21577 * 119.99566 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00102 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99933 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47101 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47208 * 300.00131 * 13 12 11 15 15 C 1.53002 * 109.46794 * 60.00209 * 13 12 11 16 16 C 1.50698 * 109.46892 * 179.97438 * 13 12 11 17 17 H 1.08005 * 120.00507 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99835 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00163 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99958 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.46902 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46913 * 120.00284 * 20 18 16 23 23 H 1.48495 * 109.47296 * 240.00616 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.71959 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72059 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72040 * 1 2 3 27 27 H 1.08004 * 120.75593 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.34290 * 180.24390 * 4 3 2 29 29 H 1.08002 * 119.57723 * 179.74916 * 5 4 3 30 30 H 0.97006 * 119.99570 * 179.97438 * 8 7 6 31 31 H 0.96998 * 120.00268 * 359.97438 * 11 9 8 32 32 H 1.08996 * 109.47096 * 299.99777 * 12 11 9 33 33 H 1.09004 * 109.46694 * 59.99594 * 12 11 9 34 34 H 1.08996 * 109.47268 * 60.00400 * 14 13 12 35 35 H 1.09000 * 109.46984 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.47544 * 299.99715 * 14 13 12 37 37 H 1.08996 * 109.47084 * 59.99723 * 15 13 12 38 38 H 1.09000 * 109.46856 * 179.97438 * 15 13 12 39 39 H 1.08993 * 109.46934 * 299.99983 * 15 13 12 40 40 H 0.96996 * 120.00289 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1930 0.0000 4 6 3.5956 1.1457 0.0051 5 6 4.2302 -0.0808 -0.0009 6 7 3.5352 -1.2021 -0.0060 7 6 2.2114 -1.1983 -0.0061 8 7 1.5175 -2.4073 -0.0110 9 6 2.1943 -3.5728 -0.0161 10 8 3.4101 -3.5697 -0.0170 11 7 1.5233 -4.7416 -0.0214 12 6 2.2590 -6.0085 -0.0276 13 6 1.2677 -7.1739 -0.0321 14 6 0.3887 -7.1007 1.2180 15 6 0.3871 -7.0894 -1.2805 16 6 2.0245 -8.4770 -0.0391 17 1 3.1046 -8.4744 -0.0398 18 6 1.3381 -9.6729 -0.0436 19 7 0.0230 -9.6762 -0.0422 20 14 2.2762 -11.2883 -0.0515 21 1 3.7355 -11.0132 -0.0512 22 1 1.9206 -12.0731 1.1580 23 1 1.9183 -12.0626 -1.2670 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3633 0.8925 -0.5095 27 1 1.6880 2.1395 0.0004 28 1 4.1727 2.0586 0.0092 29 1 5.3094 -0.1227 -0.0011 30 1 0.5475 -2.4097 -0.0107 31 1 0.5534 -4.7441 -0.0211 32 1 2.8855 -6.0605 -0.9180 33 1 2.8862 -6.0688 0.8619 34 1 -0.1587 -6.1581 1.2226 35 1 -0.3172 -7.9312 1.2150 36 1 1.0161 -7.1608 2.1073 37 1 1.0133 -7.1416 -2.1711 38 1 -0.3189 -7.9199 -1.2839 39 1 -0.1602 -6.1469 -1.2759 40 1 -0.4599 -10.5175 -0.0458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459224648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:10 Heat of formation + Delta-G solvation = 13.461305 kcal Electronic energy + Delta-G solvation = -21336.582463 eV Core-core repulsion = 18151.840598 eV Total energy + Delta-G solvation = -3184.741865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.82241 -39.12265 -36.50785 -34.84252 -33.54325 -33.23548 -31.12642 -30.21110 -27.35435 -25.72475 -25.66856 -25.01081 -23.39939 -22.10794 -20.60949 -18.83092 -18.56713 -17.69811 -16.01162 -15.69332 -15.57946 -15.44817 -14.74479 -14.49952 -14.26088 -14.12181 -13.54078 -13.09653 -13.04839 -12.90423 -12.74369 -12.70284 -12.17953 -11.76220 -11.43373 -11.20362 -10.92649 -10.67179 -10.64859 -10.35589 -10.21473 -10.01319 -9.65323 -9.62732 -9.33851 -8.93175 -8.77338 -8.47372 -8.34986 -8.03153 -6.01891 -4.11555 1.09028 1.31272 2.74573 3.28104 3.36706 3.42065 3.49768 4.01330 4.25921 4.41620 4.57309 4.66523 4.86010 4.90489 5.11818 5.25197 5.30009 5.33779 5.52723 5.78560 5.90307 6.11327 6.19216 6.31339 6.36560 6.50136 6.72904 6.80083 6.82276 6.91366 7.03314 7.06451 7.10903 7.37469 7.55979 7.70426 8.01427 8.02182 8.13508 8.37982 8.45783 8.88561 9.00555 9.54300 10.99661 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039703 B = 0.003487 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.064128 B = 8028.708767 C = 8537.404273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.185 4.185 3 C -0.050 4.050 4 C -0.214 4.214 5 C 0.128 3.872 6 N -0.469 5.469 7 C 0.389 3.611 8 N -0.673 5.673 9 C 0.684 3.316 10 O -0.535 6.535 11 N -0.730 5.730 12 C 0.150 3.850 13 C 0.056 3.944 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.504 4.504 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.156 0.844 30 H 0.409 0.591 31 H 0.393 0.607 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.005 0.995 35 H 0.085 0.915 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.005 0.995 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 19.938 0.107 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.191 4.191 3 C -0.076 4.076 4 C -0.236 4.236 5 C -0.030 4.030 6 N -0.183 5.183 7 C 0.155 3.845 8 N -0.322 5.322 9 C 0.384 3.616 10 O -0.407 6.407 11 N -0.385 5.385 12 C 0.028 3.972 13 C 0.055 3.945 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.173 0.827 30 H 0.247 0.753 31 H 0.227 0.773 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.024 0.976 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.024 0.976 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.356 18.799 0.100 18.802 hybrid contribution -0.912 -0.072 -0.005 0.915 sum -1.267 18.726 0.096 18.769 Atomic orbital electron populations 1.20649 0.90311 1.02930 1.02525 1.20225 0.97145 0.92326 1.09444 1.21188 0.93993 0.97116 0.95305 1.21990 0.95136 0.99509 1.06987 1.22699 1.00236 0.86828 0.93250 1.67781 1.05463 1.30539 1.14508 1.18070 0.88753 0.84348 0.93288 1.42977 1.09859 1.03449 1.75951 1.16188 0.86054 0.80166 0.79228 1.91013 1.10669 1.85291 1.53696 1.45575 1.09999 1.04923 1.78016 1.21637 0.94957 0.80064 1.00562 1.18373 0.91968 0.91321 0.92834 1.21822 1.00234 0.99109 0.97606 1.21822 1.00231 0.99085 0.97627 1.21032 0.92976 0.89672 1.50621 0.92294 1.24880 0.94878 0.98982 0.94800 1.69808 1.05868 1.26091 1.50764 0.86511 0.80295 0.83570 0.77498 1.19707 1.21080 1.21076 0.90929 0.91798 0.90959 0.84870 0.85070 0.82706 0.75334 0.77262 0.92747 0.92754 0.97589 0.89611 0.95415 0.95413 0.89614 0.97598 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.59 36.01 0.35 -0.45 16 2 C -0.19 -2.02 5.91 -104.28 -0.62 -2.64 16 3 C -0.05 -0.47 9.85 -39.31 -0.39 -0.85 16 4 C -0.21 -2.09 10.11 -39.42 -0.40 -2.49 16 5 C 0.13 1.63 11.18 -17.57 -0.20 1.44 16 6 N -0.47 -7.90 7.87 -12.37 -0.10 -8.00 16 7 C 0.39 5.74 7.41 -154.70 -1.15 4.59 16 8 N -0.67 -9.80 5.30 -15.82 -0.08 -9.88 16 9 C 0.68 12.85 8.53 -86.92 -0.74 12.11 16 10 O -0.54 -12.25 14.59 5.30 0.08 -12.17 16 11 N -0.73 -13.28 4.96 -65.23 -0.32 -13.60 16 12 C 0.15 3.26 4.50 -4.04 -0.02 3.24 16 13 C 0.06 1.29 0.50 -155.66 -0.08 1.22 16 14 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.50 -13.27 8.01 -34.44 -0.28 -13.54 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 18 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.58 9.35 55.43 0.52 -23.07 16 20 Si 0.89 20.80 29.54 -169.99 -5.02 15.77 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 26 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 28 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.41 4.42 6.69 -40.82 -0.27 4.14 16 31 H 0.39 6.25 6.18 -40.82 -0.25 6.00 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 35 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 39 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 40 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 LS Contribution 324.16 15.07 4.88 4.88 Total: -1.00 -31.84 324.16 -8.60 -40.44 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.55 Total: 6.60 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -3.01 Total: -0.98 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.01 Total: -54.54 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.84 -8.60 -40.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459224648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.903 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds