Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38388 * 120.44673 * 2 1 4 4 C 1.38816 * 118.49294 * 179.76118 * 3 2 1 5 5 C 1.38100 * 119.30813 * 0.51590 * 4 3 2 6 6 N 1.31918 * 120.85141 * 359.72904 * 5 4 3 7 7 C 1.32384 * 121.63141 * 0.02562 * 6 5 4 8 8 N 1.39391 * 119.69149 * 180.02562 * 7 6 5 9 9 C 1.34776 * 120.00508 * 359.97438 * 8 7 6 10 10 O 1.21577 * 119.99566 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00102 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99933 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47101 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47208 * 300.00131 * 13 12 11 15 15 C 1.53002 * 109.46794 * 60.00209 * 13 12 11 16 16 C 1.50698 * 109.46892 * 179.97438 * 13 12 11 17 17 H 1.08005 * 120.00507 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99835 * 179.97438 * 16 13 12 19 19 N 1.31509 * 120.00163 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99958 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.46902 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46913 * 120.00284 * 20 18 16 23 23 H 1.48495 * 109.47296 * 240.00616 * 20 18 16 24 24 H 1.09002 * 109.47152 * 269.71959 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.72059 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.72040 * 1 2 3 27 27 H 1.08004 * 120.75593 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.34290 * 180.24390 * 4 3 2 29 29 H 1.08002 * 119.57723 * 179.74916 * 5 4 3 30 30 H 0.97006 * 119.99570 * 179.97438 * 8 7 6 31 31 H 0.96998 * 120.00268 * 359.97438 * 11 9 8 32 32 H 1.08996 * 109.47096 * 299.99777 * 12 11 9 33 33 H 1.09004 * 109.46694 * 59.99594 * 12 11 9 34 34 H 1.08996 * 109.47268 * 60.00400 * 14 13 12 35 35 H 1.09000 * 109.46984 * 180.02562 * 14 13 12 36 36 H 1.09001 * 109.47544 * 299.99715 * 14 13 12 37 37 H 1.08996 * 109.47084 * 59.99723 * 15 13 12 38 38 H 1.09000 * 109.46856 * 179.97438 * 15 13 12 39 39 H 1.08993 * 109.46934 * 299.99983 * 15 13 12 40 40 H 0.96996 * 120.00289 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1930 0.0000 4 6 3.5956 1.1457 0.0051 5 6 4.2302 -0.0808 -0.0009 6 7 3.5352 -1.2021 -0.0060 7 6 2.2114 -1.1983 -0.0061 8 7 1.5175 -2.4073 -0.0110 9 6 2.1943 -3.5728 -0.0161 10 8 3.4101 -3.5697 -0.0170 11 7 1.5233 -4.7416 -0.0214 12 6 2.2590 -6.0085 -0.0276 13 6 1.2677 -7.1739 -0.0321 14 6 0.3887 -7.1007 1.2180 15 6 0.3871 -7.0894 -1.2805 16 6 2.0245 -8.4770 -0.0391 17 1 3.1046 -8.4744 -0.0398 18 6 1.3381 -9.6729 -0.0436 19 7 0.0230 -9.6762 -0.0422 20 14 2.2762 -11.2883 -0.0515 21 1 3.7355 -11.0132 -0.0512 22 1 1.9206 -12.0731 1.1580 23 1 1.9183 -12.0626 -1.2670 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3633 -0.8875 -0.5182 26 1 -0.3633 0.8925 -0.5095 27 1 1.6880 2.1395 0.0004 28 1 4.1727 2.0586 0.0092 29 1 5.3094 -0.1227 -0.0011 30 1 0.5475 -2.4097 -0.0107 31 1 0.5534 -4.7441 -0.0211 32 1 2.8855 -6.0605 -0.9180 33 1 2.8862 -6.0688 0.8619 34 1 -0.1587 -6.1581 1.2226 35 1 -0.3172 -7.9312 1.2150 36 1 1.0161 -7.1608 2.1073 37 1 1.0133 -7.1416 -2.1711 38 1 -0.3189 -7.9199 -1.2839 39 1 -0.1602 -6.1469 -1.2759 40 1 -0.4599 -10.5175 -0.0458 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459224648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = -6.402890 kcal Electronic energy + Delta-G solvation = -21337.443839 eV Core-core repulsion = 18151.840598 eV Total energy + Delta-G solvation = -3185.603241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.91673 -40.41019 -38.22674 -36.04899 -35.00819 -34.37812 -32.81173 -31.34133 -28.14205 -27.55960 -27.46009 -26.77014 -24.53669 -22.96655 -21.95572 -20.62150 -19.84974 -18.88323 -17.80754 -16.94594 -16.77392 -16.63457 -16.35285 -15.89384 -15.40200 -15.27239 -14.91818 -14.72703 -14.52856 -14.01312 -13.80483 -13.59748 -13.37145 -13.21208 -13.10650 -12.70954 -12.57003 -12.45025 -12.26625 -12.13902 -11.81397 -11.48008 -11.47803 -11.19985 -10.70448 -10.52489 -10.39886 -10.00527 -9.97589 -9.06238 -8.02652 -6.17968 0.20076 0.47365 1.41453 1.45059 1.51002 1.56935 2.15832 2.45980 3.01213 3.10406 3.21092 3.69231 3.87744 4.07717 4.19919 4.29715 4.41720 4.52042 4.65619 4.70940 4.81809 4.85625 4.97560 5.06040 5.08308 5.15648 5.20142 5.22855 5.31580 5.36068 5.40829 5.58765 5.67574 5.67628 5.80866 5.95670 6.15649 6.21606 6.43847 6.84504 6.86186 7.31031 7.49639 7.61856 8.96587 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039703 B = 0.003487 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.064128 B = 8028.708767 C = 8537.404273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.173 4.173 3 C -0.050 4.050 4 C -0.195 4.195 5 C 0.098 3.902 6 N -0.526 5.526 7 C 0.346 3.654 8 N -0.659 5.659 9 C 0.685 3.315 10 O -0.583 6.583 11 N -0.720 5.720 12 C 0.169 3.831 13 C 0.053 3.947 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.529 4.529 17 H 0.043 0.957 18 C 0.029 3.971 19 N -0.898 5.898 20 Si 0.945 3.055 21 H -0.277 1.277 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.175 0.825 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.427 0.573 31 H 0.406 0.594 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 22.573 0.110 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.179 4.179 3 C -0.076 4.076 4 C -0.216 4.216 5 C -0.060 4.060 6 N -0.240 5.240 7 C 0.114 3.886 8 N -0.311 5.311 9 C 0.385 3.615 10 O -0.458 6.458 11 N -0.377 5.377 12 C 0.044 3.956 13 C 0.052 3.948 14 C -0.177 4.177 15 C -0.177 4.177 16 C -0.568 4.568 17 H 0.062 0.938 18 C -0.171 4.171 19 N -0.537 5.537 20 Si 0.772 3.228 21 H -0.201 1.201 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.114 0.886 27 H 0.193 0.807 28 H 0.185 0.815 29 H 0.180 0.820 30 H 0.267 0.733 31 H 0.243 0.757 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.908 21.489 0.104 21.574 hybrid contribution -0.420 -0.731 -0.004 0.843 sum -2.328 20.759 0.100 20.889 Atomic orbital electron populations 1.20774 0.87705 1.04326 1.03693 1.20623 0.98976 0.91246 1.07036 1.21746 0.93923 0.98174 0.93779 1.22380 0.95897 0.99466 1.03824 1.22998 1.00854 0.87334 0.94776 1.67573 1.07224 1.33141 1.16064 1.18430 0.88788 0.85205 0.96173 1.42636 1.10527 1.02319 1.75582 1.16310 0.85570 0.81043 0.78588 1.90978 1.12916 1.86167 1.55764 1.45231 1.10347 1.03911 1.78195 1.21157 0.94390 0.81256 0.98748 1.18361 0.92202 0.90605 0.93644 1.21661 0.99531 0.99918 0.96637 1.21662 0.99528 0.99893 0.96660 1.21300 0.92630 0.91597 1.51233 0.93844 1.25434 0.95672 1.01307 0.94652 1.69902 1.06458 1.26643 1.50719 0.85706 0.78969 0.80559 0.77567 1.20136 1.20649 1.20638 0.89704 0.91476 0.88556 0.80721 0.81540 0.81997 0.73287 0.75689 0.94653 0.94660 0.94325 0.91763 0.96429 0.96427 0.91766 0.94333 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.59 71.24 0.68 -0.52 16 2 C -0.17 -3.31 5.91 -19.64 -0.12 -3.42 16 3 C -0.05 -0.75 9.85 22.44 0.22 -0.53 16 4 C -0.19 -3.25 10.11 22.38 0.23 -3.02 16 5 C 0.10 2.46 11.18 84.65 0.95 3.40 16 6 N -0.53 -18.03 7.87 -193.05 -1.52 -19.55 16 7 C 0.35 9.99 7.41 132.90 0.99 10.98 16 8 N -0.66 -18.79 5.30 -322.22 -1.71 -20.50 16 9 C 0.69 26.05 8.53 179.06 1.53 27.58 16 10 O -0.58 -27.80 14.59 -3.96 -0.06 -27.85 16 11 N -0.72 -26.06 4.96 -478.55 -2.37 -28.43 16 12 C 0.17 7.49 4.50 86.38 0.39 7.87 16 13 C 0.05 2.46 0.50 -52.93 -0.03 2.44 16 14 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 15 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 16 C -0.53 -28.43 8.01 25.60 0.21 -28.22 16 17 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 18 C 0.03 1.55 5.15 84.66 0.44 1.98 16 19 N -0.90 -47.93 9.35 21.45 0.20 -47.73 16 20 Si 0.95 43.05 29.54 68.60 2.03 45.07 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.72 6.56 -2.39 -0.02 0.70 16 26 H 0.10 0.65 8.09 -2.38 -0.02 0.63 16 27 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 28 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 29 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.43 8.48 6.69 -92.70 -0.62 7.86 16 31 H 0.41 12.27 6.18 -92.71 -0.57 11.69 16 32 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 35 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 39 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 40 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 Total: -1.00 -72.03 324.16 3.07 -68.96 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.13 Total: 20.98 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 6.64 Total: 9.05 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -5.40 Total: -116.21 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.06 Total: -27.85 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -72.03 3.07 -68.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459224648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.555 kcal (2) G-P(sol) polarization free energy of solvation -72.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds