Wall clock time and date at job start Mon Mar 30 2020 01:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35232 * 119.65061 * 2 1 4 4 C 1.41352 * 119.25264 * 180.27311 * 3 2 1 5 5 N 1.34329 * 120.66947 * 179.71401 * 4 3 2 6 6 C 1.33231 * 119.99471 * 175.18151 * 5 4 3 7 7 O 1.21933 * 120.00067 * 65.08892 * 6 5 4 8 8 N 1.34774 * 119.99898 * 245.08227 * 6 5 4 9 9 C 1.46505 * 120.00373 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47443 * 179.97438 * 9 8 6 11 11 C 1.52991 * 109.47314 * 299.99759 * 10 9 8 12 12 C 1.53006 * 109.46928 * 59.99820 * 10 9 8 13 13 C 1.50697 * 109.47013 * 179.97438 * 10 9 8 14 14 H 1.08003 * 120.00403 * 1.30481 * 13 10 9 15 15 C 1.37878 * 119.99844 * 181.30368 * 13 10 9 16 16 N 1.31514 * 119.99870 * 192.13074 * 15 13 10 17 17 Si 1.86796 * 120.00019 * 12.13044 * 15 13 10 18 18 H 1.48506 * 109.47301 * 84.69089 * 17 15 13 19 19 H 1.48502 * 109.47002 * 204.68932 * 17 15 13 20 20 H 1.48496 * 109.47382 * 324.68961 * 17 15 13 21 21 C 1.41351 * 118.65425 * 359.44291 * 4 3 2 22 22 C 1.35222 * 119.25605 * 0.27450 * 21 4 3 23 23 N 1.35538 * 119.65584 * 179.70681 * 2 1 3 24 24 H 0.96998 * 119.27575 * 359.97438 * 23 2 1 25 25 H 1.09003 * 109.47033 * 270.29098 * 1 2 3 26 26 H 1.09001 * 109.47349 * 30.29346 * 1 2 3 27 27 H 1.09001 * 109.46732 * 150.29630 * 1 2 3 28 28 H 1.07998 * 120.37550 * 0.02562 * 3 2 1 29 29 H 0.96999 * 120.00118 * 0.02562 * 8 6 5 30 30 H 1.09001 * 109.46557 * 300.00417 * 9 8 6 31 31 H 1.08996 * 109.46875 * 59.99534 * 9 8 6 32 32 H 1.09005 * 109.47002 * 68.92607 * 11 10 9 33 33 H 1.08997 * 109.47480 * 188.92439 * 11 10 9 34 34 H 1.09000 * 109.47067 * 308.93035 * 11 10 9 35 35 H 1.09000 * 109.47124 * 60.00095 * 12 10 9 36 36 H 1.08996 * 109.46885 * 179.97438 * 12 10 9 37 37 H 1.09002 * 109.46985 * 299.99849 * 12 10 9 38 38 H 0.97003 * 120.00104 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.36885 * 180.29651 * 21 4 3 40 40 H 1.08005 * 119.65776 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1760 1.1752 0.0000 4 6 3.5895 1.1654 -0.0059 5 7 4.2827 2.3160 -0.0118 6 6 5.6117 2.2935 0.0796 7 8 6.2758 1.7949 -0.8131 8 7 6.2219 2.8219 1.1589 9 6 7.6834 2.7976 1.2593 10 6 8.1156 3.4566 2.5707 11 6 7.6266 4.9060 2.5985 12 6 7.5106 2.6914 3.7495 13 6 9.6187 3.4310 2.6741 14 1 10.2081 3.0079 1.8740 15 6 10.2418 3.9477 3.7903 16 7 11.5419 4.1460 3.7850 17 14 9.2393 4.3662 5.3099 18 1 9.0648 3.1466 6.1391 19 1 9.9482 5.4047 6.1000 20 1 7.9081 4.8799 4.8988 21 6 4.2587 -0.0796 0.0005 22 6 3.5325 -1.2202 0.0063 23 7 2.1777 -1.1778 0.0060 24 1 1.6771 -2.0086 0.0107 25 1 -0.3633 0.0052 1.0277 26 1 -0.3634 0.8873 -0.5184 27 1 -0.3633 -0.8927 -0.5092 28 1 1.6365 2.1108 0.0004 29 1 5.6936 3.2183 1.8692 30 1 8.0317 1.7650 1.2389 31 1 8.1143 3.3430 0.4197 32 1 6.5400 4.9213 2.6838 33 1 8.0653 5.4211 3.4530 34 1 7.9259 5.4081 1.6786 35 1 7.8590 1.6588 3.7297 36 1 7.8188 3.1606 4.6838 37 1 6.4232 2.7096 3.6748 38 1 11.9803 4.5092 4.5704 39 1 5.3380 -0.1194 0.0010 40 1 4.0371 -2.1751 0.0116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459469246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:39 Heat of formation + Delta-G solvation = 6.122616 kcal Electronic energy + Delta-G solvation = -21294.246474 eV Core-core repulsion = 18109.186380 eV Total energy + Delta-G solvation = -3185.060094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.86051 -40.64477 -38.54316 -36.03392 -34.88950 -34.05727 -33.41574 -31.58068 -28.77201 -28.08386 -27.53738 -26.87495 -24.34323 -23.86130 -21.13258 -20.92462 -19.66222 -18.85818 -18.09282 -17.53966 -17.26352 -16.81252 -16.13214 -16.02388 -15.77185 -15.47798 -14.94666 -14.79492 -14.41961 -14.28116 -14.07088 -13.84300 -13.81518 -13.52289 -13.11509 -12.99434 -12.78261 -12.48106 -12.39960 -12.11380 -11.95164 -11.80374 -11.66011 -11.08794 -10.65622 -10.43756 -10.36722 -10.20663 -9.84589 -8.56372 -8.31718 -6.34843 0.01824 0.32729 1.34859 1.36585 1.49573 1.87239 1.94977 2.32402 2.33447 2.89133 3.03539 3.56372 3.78834 4.01519 4.07064 4.14015 4.26952 4.34836 4.37318 4.54878 4.63865 4.72646 4.77698 4.81843 4.82897 4.88035 4.99618 5.11928 5.14875 5.19556 5.28222 5.38896 5.54546 5.63696 5.69876 5.75315 5.83373 6.26560 6.28709 6.66601 6.74697 7.00616 7.30109 7.79110 8.85684 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031997 B = 0.003712 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.866103 B = 7540.782541 C = 7730.420384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.193 3.807 3 C -0.232 4.232 4 C 0.304 3.696 5 N -0.695 5.695 6 C 0.669 3.331 7 O -0.654 6.654 8 N -0.713 5.713 9 C 0.170 3.830 10 C 0.029 3.971 11 C -0.141 4.141 12 C -0.139 4.139 13 C -0.519 4.519 14 H 0.026 0.974 15 C 0.018 3.982 16 N -0.946 5.946 17 Si 0.945 3.055 18 H -0.276 1.276 19 H -0.309 1.309 20 H -0.208 1.208 21 C -0.304 4.304 22 C 0.184 3.816 23 N -0.557 5.557 24 H 0.447 0.553 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.154 0.846 29 H 0.403 0.597 30 H 0.039 0.961 31 H 0.028 0.972 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.036 0.964 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.266 0.734 39 H 0.110 0.890 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.967 -15.666 -2.875 35.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 C -0.258 4.258 4 C 0.151 3.849 5 N -0.439 5.439 6 C 0.370 3.630 7 O -0.538 6.538 8 N -0.367 5.367 9 C 0.045 3.955 10 C 0.028 3.972 11 C -0.199 4.199 12 C -0.196 4.196 13 C -0.558 4.558 14 H 0.045 0.955 15 C -0.180 4.180 16 N -0.586 5.586 17 Si 0.774 3.226 18 H -0.203 1.203 19 H -0.238 1.238 20 H -0.132 1.132 21 C -0.332 4.332 22 C 0.052 3.948 23 N -0.162 5.162 24 H 0.289 0.711 25 H 0.127 0.873 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.172 0.828 29 H 0.239 0.761 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -31.336 -15.036 -3.475 34.930 hybrid contribution 1.377 0.005 0.642 1.519 sum -29.959 -15.031 -2.833 33.638 Atomic orbital electron populations 1.21231 0.83672 1.06716 1.06022 1.20905 0.96751 0.84334 0.90130 1.20526 0.90412 0.99482 1.15374 1.19355 0.94470 0.87858 0.83222 1.68576 1.05482 1.27726 1.42138 1.17705 0.86914 0.76644 0.81737 1.90830 1.69619 1.51634 1.41698 1.45696 1.07374 1.62624 1.21009 1.20930 0.78410 0.98714 0.97468 1.18639 0.94010 0.93110 0.91444 1.22262 0.99367 0.97258 1.00983 1.22188 0.99677 1.00186 0.97564 1.20999 0.90557 1.39906 1.04291 0.95516 1.25871 0.95777 0.94220 1.02106 1.70099 1.11623 1.46049 1.30800 0.86325 0.80653 0.77470 0.78179 1.20264 1.23839 1.13199 1.21725 1.01119 0.93773 1.16604 1.22222 0.82789 1.00546 0.89271 1.41363 1.05581 1.09925 1.59316 0.71131 0.87284 0.88228 0.87364 0.82831 0.76080 0.94243 0.95384 0.92447 0.92698 0.94522 0.93257 0.94275 0.91731 0.92488 0.87176 0.76812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.32 10.07 71.24 0.72 1.04 16 2 C 0.19 1.27 6.80 41.29 0.28 1.55 16 3 C -0.23 -4.23 9.61 22.34 0.21 -4.01 16 4 C 0.30 9.15 6.60 40.29 0.27 9.41 16 5 N -0.70 -28.10 10.53 -319.05 -3.36 -31.46 16 6 C 0.67 31.34 6.90 179.53 1.24 32.57 16 7 O -0.65 -35.44 15.85 -5.10 -0.08 -35.52 16 8 N -0.71 -31.35 5.01 -479.46 -2.40 -33.75 16 9 C 0.17 8.39 4.49 86.38 0.39 8.78 16 10 C 0.03 1.43 0.50 -52.93 -0.03 1.40 16 11 C -0.14 -6.37 7.52 71.98 0.54 -5.83 16 12 C -0.14 -5.97 7.58 71.98 0.55 -5.42 16 13 C -0.52 -31.18 8.62 25.60 0.22 -30.96 16 14 H 0.03 1.80 7.99 -2.91 -0.02 1.78 16 15 C 0.02 1.05 5.35 84.65 0.45 1.51 16 16 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 17 Si 0.95 45.12 22.75 68.60 1.56 46.68 16 18 H -0.28 -12.66 7.07 99.48 0.70 -11.95 16 19 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 20 H -0.21 -8.70 4.60 99.48 0.46 -8.24 16 21 C -0.30 -7.89 9.05 22.34 0.20 -7.68 16 22 C 0.18 1.86 11.17 83.42 0.93 2.79 16 23 N -0.56 -1.50 5.24 -183.35 -0.96 -2.46 16 24 H 0.45 -3.28 8.77 -92.71 -0.81 -4.10 16 25 H 0.11 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.10 -0.19 8.07 -2.39 -0.02 -0.21 16 27 H 0.11 -0.86 8.14 -2.39 -0.02 -0.88 16 28 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 29 H 0.40 15.78 6.35 -92.71 -0.59 15.20 16 30 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 2.19 7.12 -2.38 -0.02 2.17 16 33 H 0.05 2.48 4.08 -2.39 -0.01 2.47 16 34 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 1.68 2.36 -2.39 -0.01 1.68 16 37 H 0.06 2.32 6.86 -2.39 -0.02 2.30 16 38 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 39 H 0.11 3.84 6.37 -2.91 -0.02 3.83 16 40 H 0.22 0.24 8.06 -2.91 -0.02 0.21 16 Total: -1.00 -98.02 317.61 0.45 -97.57 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -0.58 Total: 14.73 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.97 Total: 5.16 kcal Atomic # 7 Polarization: -122.19 SS G_CDS: -6.42 Total: -128.62 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.08 Total: -35.52 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.56 Total: 46.68 kcal Total: -98.02 0.45 -97.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459469246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.688 kcal (2) G-P(sol) polarization free energy of solvation -98.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds