Wall clock time and date at job start Mon Mar 30 2020 02:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35228 * 120.37416 * 2 1 4 4 N 1.35537 * 120.68884 * 179.97438 * 3 2 1 5 5 H 0.97001 * 119.27115 * 179.97438 * 4 3 2 6 6 C 1.35534 * 121.45393 * 359.97438 * 4 3 2 7 7 C 1.35227 * 120.69102 * 0.03717 * 6 4 3 8 8 C 1.41349 * 119.25641 * 359.71118 * 7 6 4 9 9 N 1.34326 * 120.67622 * 180.26836 * 8 7 6 10 10 C 1.33230 * 119.99723 * 356.26078 * 9 8 7 11 11 O 1.21935 * 120.00553 * 64.88945 * 10 9 8 12 12 N 1.34781 * 119.99872 * 244.89328 * 10 9 8 13 13 C 1.46504 * 119.99910 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46723 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47127 * 299.99605 * 14 13 12 16 16 C 1.52999 * 109.47126 * 59.99870 * 14 13 12 17 17 C 1.50707 * 109.46837 * 179.97438 * 14 13 12 18 18 H 1.07996 * 119.99636 * 358.24544 * 17 14 13 19 19 C 1.37871 * 119.99860 * 178.24758 * 17 14 13 20 20 N 1.31518 * 120.00403 * 2.51750 * 19 17 14 21 21 Si 1.86801 * 119.99972 * 182.51512 * 19 17 14 22 22 H 1.48502 * 109.47072 * 94.99628 * 21 19 17 23 23 H 1.48500 * 109.47460 * 214.99473 * 21 19 17 24 24 H 1.48494 * 109.47128 * 334.99916 * 21 19 17 25 25 H 1.08995 * 109.47337 * 89.99603 * 1 2 3 26 26 H 1.09001 * 109.47163 * 210.00228 * 1 2 3 27 27 H 1.09008 * 109.46873 * 329.99451 * 1 2 3 28 28 H 1.08005 * 119.65058 * 0.02562 * 3 2 1 29 29 H 1.08010 * 119.65569 * 180.02562 * 6 4 3 30 30 H 1.08003 * 120.36889 * 179.97438 * 7 6 4 31 31 H 0.96996 * 119.99740 * 359.97438 * 12 10 9 32 32 H 1.08996 * 109.46833 * 299.99410 * 13 12 10 33 33 H 1.08998 * 109.47518 * 59.99944 * 13 12 10 34 34 H 1.08997 * 109.47472 * 55.03730 * 15 14 13 35 35 H 1.08998 * 109.47176 * 175.03819 * 15 14 13 36 36 H 1.09001 * 109.47357 * 295.03182 * 15 14 13 37 37 H 1.08997 * 109.47356 * 60.00278 * 16 14 13 38 38 H 1.09001 * 109.46673 * 179.97438 * 16 14 13 39 39 H 1.08994 * 109.46944 * 299.99482 * 16 14 13 40 40 H 0.96998 * 120.00112 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1908 1.1667 0.0000 4 7 3.5462 1.1741 0.0005 5 1 4.0158 2.0229 0.0001 6 6 4.2598 0.0218 0.0016 7 6 3.6345 -1.1772 0.0014 8 6 2.2217 -1.2195 0.0063 9 7 1.5713 -2.3948 0.0116 10 6 2.2559 -3.5353 -0.0629 11 8 3.0105 -3.8537 0.8405 12 7 2.1145 -4.3373 -1.1369 13 6 2.8669 -5.5917 -1.2186 14 6 2.5258 -6.3066 -2.5276 15 6 1.0264 -6.6077 -2.5685 16 6 2.8985 -5.4103 -3.7103 17 6 3.3003 -7.5967 -2.6119 18 1 3.9901 -7.8647 -1.8254 19 6 3.1282 -8.4345 -3.6932 20 7 2.3257 -8.0851 -4.6748 21 14 4.0348 -10.0662 -3.7640 22 1 3.1572 -11.1434 -3.2398 23 1 4.4022 -10.3678 -5.1709 24 1 5.2658 -9.9848 -2.9375 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6512 2.1022 0.0004 29 1 5.3391 0.0616 0.0024 30 1 4.2083 -2.0922 0.0018 31 1 1.5140 -4.0842 -1.8553 32 1 3.9351 -5.3771 -1.1890 33 1 2.6011 -6.2304 -0.3763 34 1 0.4661 -5.6847 -2.4192 35 1 0.7682 -7.0369 -3.5366 36 1 0.7764 -7.3163 -1.7788 37 1 3.9667 -5.1958 -3.6812 38 1 2.6559 -5.9198 -4.6428 39 1 2.3386 -4.4771 -3.6494 40 1 2.2049 -8.6745 -5.4357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459483788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:47 Heat of formation + Delta-G solvation = 20.597061 kcal Electronic energy + Delta-G solvation = -21397.675249 eV Core-core repulsion = 18213.242814 eV Total energy + Delta-G solvation = -3184.432435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88089 -39.01921 -36.39254 -35.06088 -33.07580 -32.95968 -31.04213 -30.20297 -27.33416 -25.59480 -25.58000 -24.99213 -23.47694 -22.41475 -19.88468 -18.87828 -18.59868 -17.63420 -16.76812 -15.79206 -15.27156 -15.04563 -14.86274 -14.64724 -14.32112 -13.71701 -13.48764 -13.00649 -12.94396 -12.80579 -12.53077 -12.25193 -12.03092 -11.59158 -11.31440 -11.18072 -11.03339 -10.77140 -10.59373 -10.26784 -10.15901 -10.01816 -9.63317 -9.48626 -9.21651 -8.74893 -8.62027 -8.32179 -8.01010 -7.40132 -5.92684 -4.01795 0.93426 1.18623 2.67036 3.24017 3.34116 3.40941 3.45167 3.61392 4.26762 4.33762 4.47425 4.61450 4.85741 4.96858 5.22012 5.33943 5.46170 5.66789 5.76643 5.84771 6.01961 6.33855 6.41507 6.49402 6.54893 6.64784 6.67313 6.88576 6.97572 7.00169 7.12572 7.16474 7.32402 7.53023 7.68855 7.79693 8.09120 8.12230 8.24485 8.50044 8.58644 8.98253 9.35304 9.63107 11.09131 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032574 B = 0.003681 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.378950 B = 7604.148492 C = 7802.409177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.160 4.160 3 C 0.112 3.888 4 N -0.592 5.592 5 H 0.418 0.582 6 C 0.125 3.875 7 C -0.243 4.243 8 C 0.311 3.689 9 N -0.620 5.620 10 C 0.661 3.339 11 O -0.606 6.606 12 N -0.714 5.714 13 C 0.143 3.857 14 C 0.055 3.945 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.504 4.504 18 H 0.057 0.943 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.893 3.107 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.150 0.850 31 H 0.396 0.604 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.008 0.992 35 H 0.082 0.918 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.084 0.916 39 H 0.006 0.994 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 23.667 5.500 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.169 4.169 3 C -0.017 4.017 4 N -0.196 5.196 5 H 0.253 0.747 6 C -0.005 4.005 7 C -0.271 4.271 8 C 0.147 3.853 9 N -0.356 5.356 10 C 0.361 3.639 11 O -0.487 6.487 12 N -0.366 5.366 13 C 0.019 3.981 14 C 0.055 3.945 15 C -0.186 4.186 16 C -0.185 4.185 17 C -0.542 4.542 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.184 0.816 29 H 0.182 0.818 30 H 0.168 0.832 31 H 0.231 0.769 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.027 0.973 35 H 0.100 0.900 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.102 0.898 39 H 0.025 0.975 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.262 22.746 5.996 23.524 hybrid contribution 1.142 -0.687 -0.374 1.385 sum 1.404 22.058 5.622 22.807 Atomic orbital electron populations 1.20408 0.88950 1.02872 1.02357 1.19320 0.97579 0.89937 1.10037 1.21564 0.82659 0.99738 0.97772 1.40966 1.05872 1.09181 1.63603 0.74668 1.21729 0.97678 0.85328 0.95761 1.21925 0.95855 0.98376 1.10916 1.18634 0.89425 0.91212 0.86074 1.68677 1.36685 0.97471 1.32778 1.17379 0.78257 0.85367 0.82882 1.90900 1.39681 1.78723 1.39357 1.45904 1.47169 1.23408 1.20137 1.21580 0.94051 0.82415 1.00070 1.18361 0.93753 0.93633 0.88798 1.21792 0.96687 0.97243 1.02884 1.21801 0.97679 0.96060 1.02994 1.21016 1.23880 1.03315 1.06029 0.92476 1.24881 0.95252 0.97968 0.95429 1.69837 1.37375 1.36553 1.08733 0.86569 0.80103 0.84147 0.77113 1.20800 1.21332 1.19911 0.91452 0.90008 0.92383 0.81580 0.81785 0.83192 0.76850 0.93225 0.93134 0.97334 0.89956 0.95351 0.95641 0.89764 0.97513 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 9.81 36.01 0.35 -0.49 16 2 C -0.16 -1.70 5.89 -104.51 -0.62 -2.32 16 3 C 0.11 0.66 10.82 -16.99 -0.18 0.48 16 4 N -0.59 -2.70 5.24 -13.05 -0.07 -2.77 16 5 H 0.42 0.11 8.90 -40.82 -0.36 -0.25 16 6 C 0.13 0.95 11.17 -16.99 -0.19 0.76 16 7 C -0.24 -3.31 9.05 -39.47 -0.36 -3.67 16 8 C 0.31 4.77 6.59 -84.41 -0.56 4.22 16 9 N -0.62 -12.09 9.62 -14.59 -0.14 -12.23 16 10 C 0.66 14.91 6.88 -88.29 -0.61 14.30 16 11 O -0.61 -15.42 15.87 4.98 0.08 -15.34 16 12 N -0.71 -15.82 4.92 -65.56 -0.32 -16.14 16 13 C 0.14 3.45 4.50 -4.04 -0.02 3.43 16 14 C 0.06 1.40 0.50 -155.66 -0.08 1.32 16 15 C -0.13 -3.19 8.05 37.15 0.30 -2.90 16 16 C -0.13 -3.11 8.09 37.16 0.30 -2.81 16 17 C -0.50 -13.98 8.01 -34.44 -0.28 -14.26 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.07 1.81 5.14 -17.82 -0.09 1.71 16 20 N -0.89 -24.66 9.42 55.43 0.52 -24.14 16 21 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.01 7.56 -51.93 -0.39 0.62 16 27 H 0.06 0.37 8.09 -51.92 -0.42 -0.05 16 28 H 0.17 0.27 8.06 -52.48 -0.42 -0.15 16 29 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 30 H 0.15 2.51 6.39 -52.48 -0.34 2.18 16 31 H 0.40 8.37 6.26 -40.82 -0.26 8.12 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.01 0.18 6.74 -51.93 -0.35 -0.17 16 35 H 0.08 2.19 6.18 -51.93 -0.32 1.87 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 2.22 6.11 -51.93 -0.32 1.91 16 39 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 326.40 15.07 4.92 4.92 Total: -1.00 -36.61 326.40 -7.67 -44.27 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.61 Total: 5.14 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.02 Total: -0.21 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.01 Total: -55.28 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.08 Total: -15.34 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.61 -7.67 -44.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459483788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.869 kcal (2) G-P(sol) polarization free energy of solvation -36.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds