Wall clock time and date at job start Mon Mar 30 2020 02:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35228 * 120.37416 * 2 1 4 4 N 1.35537 * 120.68884 * 179.97438 * 3 2 1 5 5 H 0.97001 * 119.27115 * 179.97438 * 4 3 2 6 6 C 1.35534 * 121.45393 * 359.97438 * 4 3 2 7 7 C 1.35227 * 120.69102 * 0.03717 * 6 4 3 8 8 C 1.41349 * 119.25641 * 359.71118 * 7 6 4 9 9 N 1.34326 * 120.67622 * 180.26836 * 8 7 6 10 10 C 1.33230 * 119.99723 * 356.26078 * 9 8 7 11 11 O 1.21935 * 120.00553 * 64.88945 * 10 9 8 12 12 N 1.34781 * 119.99872 * 244.89328 * 10 9 8 13 13 C 1.46504 * 119.99910 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46723 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47127 * 299.99605 * 14 13 12 16 16 C 1.52999 * 109.47126 * 59.99870 * 14 13 12 17 17 C 1.50707 * 109.46837 * 179.97438 * 14 13 12 18 18 H 1.07996 * 119.99636 * 358.24544 * 17 14 13 19 19 C 1.37871 * 119.99860 * 178.24758 * 17 14 13 20 20 N 1.31518 * 120.00403 * 2.51750 * 19 17 14 21 21 Si 1.86801 * 119.99972 * 182.51512 * 19 17 14 22 22 H 1.48502 * 109.47072 * 94.99628 * 21 19 17 23 23 H 1.48500 * 109.47460 * 214.99473 * 21 19 17 24 24 H 1.48494 * 109.47128 * 334.99916 * 21 19 17 25 25 H 1.08995 * 109.47337 * 89.99603 * 1 2 3 26 26 H 1.09001 * 109.47163 * 210.00228 * 1 2 3 27 27 H 1.09008 * 109.46873 * 329.99451 * 1 2 3 28 28 H 1.08005 * 119.65058 * 0.02562 * 3 2 1 29 29 H 1.08010 * 119.65569 * 180.02562 * 6 4 3 30 30 H 1.08003 * 120.36889 * 179.97438 * 7 6 4 31 31 H 0.96996 * 119.99740 * 359.97438 * 12 10 9 32 32 H 1.08996 * 109.46833 * 299.99410 * 13 12 10 33 33 H 1.08998 * 109.47518 * 59.99944 * 13 12 10 34 34 H 1.08997 * 109.47472 * 55.03730 * 15 14 13 35 35 H 1.08998 * 109.47176 * 175.03819 * 15 14 13 36 36 H 1.09001 * 109.47357 * 295.03182 * 15 14 13 37 37 H 1.08997 * 109.47356 * 60.00278 * 16 14 13 38 38 H 1.09001 * 109.46673 * 179.97438 * 16 14 13 39 39 H 1.08994 * 109.46944 * 299.99482 * 16 14 13 40 40 H 0.96998 * 120.00112 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1908 1.1667 0.0000 4 7 3.5462 1.1741 0.0005 5 1 4.0158 2.0229 0.0001 6 6 4.2598 0.0218 0.0016 7 6 3.6345 -1.1772 0.0014 8 6 2.2217 -1.2195 0.0063 9 7 1.5713 -2.3948 0.0116 10 6 2.2559 -3.5353 -0.0629 11 8 3.0105 -3.8537 0.8405 12 7 2.1145 -4.3373 -1.1369 13 6 2.8669 -5.5917 -1.2186 14 6 2.5258 -6.3066 -2.5276 15 6 1.0264 -6.6077 -2.5685 16 6 2.8985 -5.4103 -3.7103 17 6 3.3003 -7.5967 -2.6119 18 1 3.9901 -7.8647 -1.8254 19 6 3.1282 -8.4345 -3.6932 20 7 2.3257 -8.0851 -4.6748 21 14 4.0348 -10.0662 -3.7640 22 1 3.1572 -11.1434 -3.2398 23 1 4.4022 -10.3678 -5.1709 24 1 5.2658 -9.9848 -2.9375 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6512 2.1022 0.0004 29 1 5.3391 0.0616 0.0024 30 1 4.2083 -2.0922 0.0018 31 1 1.5140 -4.0842 -1.8553 32 1 3.9351 -5.3771 -1.1890 33 1 2.6011 -6.2304 -0.3763 34 1 0.4661 -5.6847 -2.4192 35 1 0.7682 -7.0369 -3.5366 36 1 0.7764 -7.3163 -1.7788 37 1 3.9667 -5.1958 -3.6812 38 1 2.6559 -5.9198 -4.6428 39 1 2.3386 -4.4771 -3.6494 40 1 2.2049 -8.6745 -5.4357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459483788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:47 Heat of formation + Delta-G solvation = -8.136687 kcal Electronic energy + Delta-G solvation = -21398.921238 eV Core-core repulsion = 18213.242814 eV Total energy + Delta-G solvation = -3185.678424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.77380 -40.51515 -38.24333 -36.17611 -34.87730 -33.94374 -32.76031 -31.51606 -28.10691 -27.63132 -27.50969 -26.81906 -24.71921 -23.23886 -21.37154 -20.59456 -19.57967 -18.91515 -17.83448 -17.66610 -16.94005 -16.66417 -16.22448 -15.79797 -15.53031 -15.19279 -14.83792 -14.70272 -14.20852 -14.05392 -13.75383 -13.66751 -13.25720 -13.17627 -13.07753 -12.72117 -12.60864 -12.38399 -12.30298 -12.23208 -12.13896 -11.63131 -11.52837 -11.23378 -10.75168 -10.42767 -10.34201 -10.16666 -9.78426 -8.44529 -8.03623 -6.20018 0.08274 0.36819 1.41870 1.43658 1.53740 1.90606 2.08089 2.34331 2.48329 2.93728 3.19210 3.74427 3.83967 4.09604 4.17703 4.29826 4.41663 4.46290 4.62992 4.71175 4.83201 4.90949 5.00100 5.01368 5.03896 5.10688 5.12953 5.22542 5.33909 5.60933 5.62715 5.63138 5.64053 5.68080 5.85572 6.06180 6.15628 6.35445 6.39833 6.75674 6.82933 7.03128 7.47173 7.81607 8.96508 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032574 B = 0.003681 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.378950 B = 7604.148492 C = 7802.409177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.202 4.202 3 C 0.165 3.835 4 N -0.554 5.554 5 H 0.451 0.549 6 C 0.180 3.820 7 C -0.306 4.306 8 C 0.300 3.700 9 N -0.688 5.688 10 C 0.667 3.333 11 O -0.656 6.656 12 N -0.714 5.714 13 C 0.161 3.839 14 C 0.052 3.948 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.531 4.531 18 H 0.044 0.956 19 C 0.028 3.972 20 N -0.900 5.900 21 Si 0.952 3.048 22 H -0.279 1.279 23 H -0.278 1.278 24 H -0.275 1.275 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.232 0.768 29 H 0.212 0.788 30 H 0.106 0.894 31 H 0.400 0.600 32 H 0.034 0.966 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.015 0.985 37 H 0.020 0.980 38 H 0.066 0.934 39 H 0.026 0.974 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 28.492 5.211 29.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.210 4.210 3 C 0.033 3.967 4 N -0.157 5.157 5 H 0.293 0.707 6 C 0.047 3.953 7 C -0.334 4.334 8 C 0.146 3.854 9 N -0.432 5.432 10 C 0.369 3.631 11 O -0.540 6.540 12 N -0.366 5.366 13 C 0.036 3.964 14 C 0.051 3.949 15 C -0.173 4.173 16 C -0.171 4.171 17 C -0.570 4.570 18 H 0.062 0.938 19 C -0.172 4.172 20 N -0.539 5.539 21 Si 0.778 3.222 22 H -0.205 1.205 23 H -0.203 1.203 24 H -0.200 1.200 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.116 0.884 28 H 0.249 0.751 29 H 0.229 0.771 30 H 0.124 0.876 31 H 0.235 0.765 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.085 0.915 36 H 0.034 0.966 37 H 0.039 0.961 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.166 27.725 5.696 28.328 hybrid contribution 0.995 -1.712 -0.233 1.994 sum 2.161 26.013 5.462 26.668 Atomic orbital electron populations 1.20341 0.88535 1.02803 1.02298 1.19534 0.98428 0.89615 1.13437 1.22417 0.82778 1.00279 0.91268 1.41345 1.06051 1.09921 1.58383 0.70692 1.22187 0.99629 0.84035 0.89460 1.21669 0.95327 0.99468 1.16958 1.19340 0.90689 0.91611 0.83733 1.68543 1.35477 0.97431 1.41705 1.17744 0.77118 0.86470 0.81817 1.90808 1.42397 1.79860 1.40946 1.45785 1.47322 1.22862 1.20674 1.21160 0.93444 0.83176 0.98624 1.18366 0.93716 0.93302 0.89496 1.21629 0.96705 0.97656 1.01347 1.21603 0.97610 0.96472 1.01394 1.21235 1.24588 1.04893 1.06255 0.93793 1.25516 0.95945 1.00767 0.94979 1.69934 1.37695 1.37401 1.08854 0.85641 0.78883 0.80313 0.77347 1.20488 1.20335 1.19976 0.91590 0.94051 0.88417 0.75150 0.77121 0.87599 0.76460 0.94728 0.95610 0.95496 0.91465 0.96592 0.96092 0.91532 0.95487 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.81 71.24 0.70 -0.75 16 2 C -0.20 -3.79 5.89 -19.79 -0.12 -3.90 16 3 C 0.16 0.82 10.82 83.43 0.90 1.72 16 4 N -0.55 -1.04 5.24 -195.20 -1.02 -2.06 16 5 H 0.45 -3.90 8.90 -92.71 -0.82 -4.72 16 6 C 0.18 1.93 11.17 83.43 0.93 2.86 16 7 C -0.31 -8.37 9.05 22.34 0.20 -8.17 16 8 C 0.30 9.46 6.59 40.29 0.27 9.72 16 9 N -0.69 -29.07 9.62 -319.05 -3.07 -32.14 16 10 C 0.67 32.90 6.88 179.53 1.24 34.14 16 11 O -0.66 -36.64 15.87 -5.10 -0.08 -36.72 16 12 N -0.71 -34.18 4.92 -479.45 -2.36 -36.54 16 13 C 0.16 8.40 4.50 86.38 0.39 8.79 16 14 C 0.05 2.76 0.50 -52.93 -0.03 2.73 16 15 C -0.12 -5.99 8.05 71.98 0.58 -5.41 16 16 C -0.11 -5.67 8.09 71.98 0.58 -5.09 16 17 C -0.53 -30.69 8.01 25.60 0.21 -30.49 16 18 H 0.04 2.59 7.74 -2.91 -0.02 2.56 16 19 C 0.03 1.55 5.14 84.65 0.44 1.99 16 20 N -0.90 -50.84 9.42 21.45 0.20 -50.64 16 21 Si 0.95 44.86 29.54 68.60 2.03 46.88 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.04 1.07 7.56 -2.39 -0.02 1.05 16 27 H 0.10 0.85 8.09 -2.38 -0.02 0.83 16 28 H 0.23 -1.55 8.06 -2.91 -0.02 -1.57 16 29 H 0.21 0.42 8.06 -2.91 -0.02 0.39 16 30 H 0.11 3.90 6.39 -2.91 -0.02 3.88 16 31 H 0.40 18.01 6.26 -92.71 -0.58 17.43 16 32 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.03 1.25 6.74 -2.39 -0.02 1.23 16 35 H 0.07 3.68 6.18 -2.39 -0.01 3.67 16 36 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 3.58 6.11 -2.39 -0.01 3.57 16 39 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 40 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -92.13 326.40 1.64 -90.49 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -0.34 Total: 12.59 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 6.28 Total: 8.14 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -6.25 Total: -121.38 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.08 Total: -36.72 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -92.13 1.64 -90.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459483788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.354 kcal (2) G-P(sol) polarization free energy of solvation -92.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds