Wall clock time and date at job start Mon Mar 30 2020 01:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38840 * 120.34500 * 2 1 4 4 C 1.38347 * 118.49959 * 180.02562 * 3 2 1 5 5 C 1.39053 * 119.09791 * 0.02562 * 4 3 2 6 6 N 1.39394 * 119.69295 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99824 * 174.91081 * 6 5 4 8 8 O 1.21584 * 120.00083 * 5.09289 * 7 6 5 9 9 N 1.34771 * 120.00234 * 185.09707 * 7 6 5 10 10 C 1.46498 * 120.00098 * 180.02562 * 9 7 6 11 11 C 1.53008 * 109.47178 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46804 * 299.99322 * 11 10 9 13 13 C 1.52992 * 109.47084 * 59.99715 * 11 10 9 14 14 C 1.50705 * 109.47060 * 179.97438 * 11 10 9 15 15 H 1.08001 * 119.99693 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99688 * 179.97438 * 14 11 10 17 17 N 1.31504 * 120.00029 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 119.99703 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47379 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46936 * 120.00009 * 18 16 14 21 21 H 1.48496 * 109.47447 * 239.99991 * 18 16 14 22 22 N 1.32345 * 120.60623 * 359.97418 * 5 4 3 23 23 C 1.31944 * 121.63638 * 0.04987 * 22 5 4 24 24 H 1.08998 * 109.46791 * 90.00106 * 1 2 3 25 25 H 1.09007 * 109.47157 * 210.00103 * 1 2 3 26 26 H 1.08996 * 109.47221 * 329.99998 * 1 2 3 27 27 H 1.08003 * 120.75439 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.45159 * 179.72437 * 4 3 2 29 29 H 0.96995 * 120.00562 * 354.91200 * 6 5 4 30 30 H 0.96998 * 120.00393 * 359.97438 * 9 7 6 31 31 H 1.09006 * 109.47203 * 299.99368 * 10 9 7 32 32 H 1.08999 * 109.47538 * 59.99687 * 10 9 7 33 33 H 1.09005 * 109.46722 * 60.00572 * 12 11 10 34 34 H 1.09001 * 109.47067 * 180.02562 * 12 11 10 35 35 H 1.09001 * 109.47335 * 300.00386 * 12 11 10 36 36 H 1.09001 * 109.47619 * 60.00246 * 13 11 10 37 37 H 1.09001 * 109.46925 * 180.02562 * 13 11 10 38 38 H 1.09005 * 109.47488 * 300.00069 * 13 11 10 39 39 H 0.97008 * 120.00291 * 179.97438 * 17 16 14 40 40 H 1.08004 * 119.57647 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1982 0.0000 4 6 3.5912 1.1536 -0.0005 5 6 4.2279 -0.0825 -0.0016 6 7 5.6206 -0.1419 -0.0027 7 6 6.2444 -1.3322 0.0998 8 8 5.5957 -2.3605 0.0999 9 7 7.5873 -1.3827 0.2022 10 6 8.2653 -2.6765 0.3131 11 6 9.7757 -2.4538 0.4146 12 6 10.2690 -1.7252 -0.8371 13 6 10.0845 -1.6085 1.6519 14 6 10.4732 -3.7848 0.5293 15 1 9.8968 -4.6982 0.5301 16 6 11.8471 -3.8364 0.6331 17 7 12.5488 -2.7243 0.6316 18 14 12.7116 -5.4862 0.7745 19 1 11.7040 -6.5768 0.7508 20 1 13.6483 -5.6535 -0.3656 21 1 13.4700 -5.5400 2.0501 22 7 3.5238 -1.2032 -0.0016 23 6 2.2044 -1.1915 -0.0015 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6865 2.1437 0.0004 28 1 4.1682 2.0665 -0.0050 29 1 6.1408 0.6734 -0.0772 30 1 8.1049 -0.5624 0.2018 31 1 7.9136 -3.1959 1.2046 32 1 8.0457 -3.2786 -0.5686 33 1 9.7645 -0.7625 -0.9195 34 1 11.3450 -1.5669 -0.7650 35 1 10.0489 -2.3275 -1.7185 36 1 9.7331 -2.1276 2.5436 37 1 11.1604 -1.4495 1.7239 38 1 9.5800 -0.6458 1.5694 39 1 13.5154 -2.7605 0.7051 40 1 1.6631 -2.1261 -0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459508532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:12 Heat of formation + Delta-G solvation = -9.287180 kcal Electronic energy + Delta-G solvation = -21060.177237 eV Core-core repulsion = 17874.448925 eV Total energy + Delta-G solvation = -3185.728313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.82934 -40.44806 -38.25477 -36.11212 -35.03974 -33.83538 -32.79813 -32.04142 -27.94660 -27.55992 -27.34586 -26.40280 -24.85805 -23.05750 -21.92744 -20.61678 -19.79445 -18.88474 -17.80757 -17.01251 -16.73633 -16.59484 -16.13432 -16.00599 -15.33162 -15.26325 -14.97383 -14.71186 -14.57632 -14.01851 -13.84551 -13.67800 -13.19667 -13.18519 -13.11151 -12.70045 -12.58089 -12.57088 -12.25893 -12.14060 -11.59573 -11.47259 -11.46132 -11.19691 -10.70486 -10.69915 -10.40247 -10.01438 -9.97214 -9.01753 -8.02862 -6.18181 0.19170 0.46711 1.41190 1.44921 1.51918 1.57237 2.15283 2.45787 2.99755 3.12340 3.20908 3.69546 3.95926 4.11059 4.17463 4.25563 4.41442 4.52072 4.66354 4.71407 4.92559 4.92681 4.98232 5.02476 5.05948 5.10495 5.19898 5.20136 5.36237 5.40870 5.45665 5.59224 5.67459 5.67486 5.83610 5.95582 6.15555 6.21586 6.43718 6.85208 6.86148 7.31460 7.49470 7.63110 8.96398 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048014 B = 0.003153 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.021678 B = 8879.524714 C = 9260.801370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.171 4.171 3 C -0.048 4.048 4 C -0.195 4.195 5 C 0.342 3.658 6 N -0.660 5.660 7 C 0.686 3.314 8 O -0.585 6.585 9 N -0.720 5.720 10 C 0.169 3.831 11 C 0.053 3.947 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.529 4.529 15 H 0.043 0.957 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.945 3.055 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.281 1.281 22 N -0.525 5.525 23 C 0.104 3.896 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.175 0.825 28 H 0.169 0.831 29 H 0.430 0.570 30 H 0.407 0.593 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.261 0.739 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.040 13.778 -1.390 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.175 4.175 3 C -0.074 4.074 4 C -0.219 4.219 5 C 0.110 3.890 6 N -0.310 5.310 7 C 0.385 3.615 8 O -0.460 6.460 9 N -0.377 5.377 10 C 0.044 3.956 11 C 0.053 3.947 12 C -0.179 4.179 13 C -0.178 4.178 14 C -0.567 4.567 15 H 0.061 0.939 16 C -0.171 4.171 17 N -0.538 5.538 18 Si 0.772 3.228 19 H -0.201 1.201 20 H -0.206 1.206 21 H -0.206 1.206 22 N -0.239 5.239 23 C -0.053 4.053 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.193 0.807 28 H 0.187 0.813 29 H 0.270 0.730 30 H 0.244 0.756 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.849 12.049 -1.359 22.412 hybrid contribution 1.021 0.066 0.054 1.024 sum -17.828 12.115 -1.306 21.595 Atomic orbital electron populations 1.20690 0.87863 1.03958 1.03217 1.21188 0.99244 0.93507 1.03547 1.21704 0.92584 0.99389 0.93690 1.21772 0.96385 0.96422 1.07294 1.18613 0.83765 0.90687 0.95893 1.42542 1.04191 1.09143 1.75136 1.16309 0.82511 0.84086 0.78582 1.90981 1.65313 1.33618 1.56092 1.45229 1.03969 1.10905 1.77572 1.21150 0.93251 0.82574 0.98576 1.18352 0.87936 0.94874 0.93578 1.21676 1.02717 0.96932 0.96542 1.21672 1.02525 0.96763 0.96880 1.21300 0.92150 0.92532 1.50741 0.93854 1.25433 0.97870 0.99069 0.94718 1.69904 1.06390 1.26906 1.50559 0.85706 0.78462 0.81045 0.77593 1.20133 1.20646 1.20638 1.67543 1.09613 1.30764 1.15985 1.22840 0.88087 0.99212 0.95190 0.90264 0.91091 0.89700 0.80715 0.81329 0.73043 0.75632 0.94720 0.94672 0.94271 0.91762 0.96381 0.96413 0.91773 0.94308 0.92987 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.03 71.24 0.71 -0.30 16 2 C -0.17 -3.03 5.90 -19.76 -0.12 -3.14 16 3 C -0.05 -0.71 9.85 22.44 0.22 -0.48 16 4 C -0.20 -3.52 9.94 22.49 0.22 -3.30 16 5 C 0.34 9.64 7.42 132.93 0.99 10.63 16 6 N -0.66 -18.24 5.39 -322.20 -1.74 -19.98 16 7 C 0.69 25.81 8.52 179.06 1.53 27.34 16 8 O -0.58 -27.79 14.61 -3.98 -0.06 -27.85 16 9 N -0.72 -25.90 4.96 -478.53 -2.37 -28.27 16 10 C 0.17 7.48 4.50 86.38 0.39 7.87 16 11 C 0.05 2.50 0.50 -52.93 -0.03 2.47 16 12 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 13 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 14 C -0.53 -28.43 8.01 25.60 0.21 -28.22 16 15 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 16 C 0.03 1.53 5.15 84.66 0.44 1.97 16 17 N -0.90 -48.05 9.35 21.45 0.20 -47.85 16 18 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 N -0.52 -17.93 7.89 -193.04 -1.52 -19.45 16 23 C 0.10 2.68 10.85 84.63 0.92 3.60 16 24 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.69 8.09 -2.38 -0.02 0.67 16 26 H 0.08 0.55 8.09 -2.39 -0.02 0.53 16 27 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 28 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 29 H 0.43 7.83 8.72 -92.71 -0.81 7.02 16 30 H 0.41 12.17 6.18 -92.71 -0.57 11.60 16 31 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.04 1.44 6.86 -2.38 -0.02 1.42 16 34 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 38 H 0.04 1.43 6.86 -2.38 -0.02 1.41 16 39 H 0.26 13.35 8.31 -92.70 -0.77 12.58 16 40 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -72.17 327.78 2.85 -69.32 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.32 Total: 20.12 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 6.64 Total: 8.82 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -5.43 Total: -115.55 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.06 Total: -27.85 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -72.17 2.85 -69.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459508532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.032 kcal (2) G-P(sol) polarization free energy of solvation -72.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds