Wall clock time and date at job start Mon Mar 30 2020 01:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38840 * 120.75379 * 2 1 4 4 C 1.38062 * 119.31408 * 180.24690 * 3 2 1 5 5 N 1.31953 * 120.84857 * 359.77184 * 4 3 2 6 6 C 1.32345 * 121.62879 * 359.97438 * 5 4 3 7 7 N 1.39393 * 119.69209 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00349 * 354.89038 * 7 6 5 9 9 O 1.21585 * 119.99804 * 5.08595 * 8 7 6 10 10 N 1.34773 * 120.00658 * 185.09270 * 8 7 6 11 11 C 1.46497 * 120.00411 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46915 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.47079 * 299.99621 * 12 11 10 14 14 C 1.52994 * 109.47340 * 60.00273 * 12 11 10 15 15 C 1.50698 * 109.46626 * 180.02562 * 12 11 10 16 16 H 1.08000 * 120.00324 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99937 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99767 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00441 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46735 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46949 * 119.99712 * 19 17 15 22 22 H 1.48493 * 109.46949 * 240.00227 * 19 17 15 23 23 C 1.38342 * 120.74890 * 179.77273 * 2 1 3 24 24 H 1.08999 * 109.47758 * 270.22752 * 1 2 3 25 25 H 1.09004 * 109.47317 * 30.23051 * 1 2 3 26 26 H 1.09002 * 109.47409 * 150.22376 * 1 2 3 27 27 H 1.08001 * 120.34415 * 0.04441 * 3 2 1 28 28 H 1.07998 * 119.58177 * 179.79112 * 4 3 2 29 29 H 0.97003 * 119.99977 * 174.88924 * 7 6 5 30 30 H 0.97008 * 119.99549 * 359.97438 * 10 8 7 31 31 H 1.08992 * 109.47057 * 299.99671 * 11 10 8 32 32 H 1.08996 * 109.46854 * 60.00322 * 11 10 8 33 33 H 1.08998 * 109.46751 * 60.00442 * 13 12 11 34 34 H 1.08996 * 109.46977 * 180.02562 * 13 12 11 35 35 H 1.08993 * 109.47155 * 300.00693 * 13 12 11 36 36 H 1.08997 * 109.47232 * 59.99463 * 14 12 11 37 37 H 1.08996 * 109.46837 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.47027 * 299.99887 * 14 12 11 39 39 H 0.97009 * 120.00164 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.45508 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1932 0.0000 4 6 3.5971 1.1585 -0.0052 5 7 4.2450 0.0090 -0.0056 6 6 3.6042 -1.1490 -0.0006 7 7 4.3293 -2.3394 -0.0018 8 6 5.6723 -2.3105 -0.1120 9 8 6.2589 -1.2455 -0.1172 10 7 6.3649 -3.4618 -0.2165 11 6 7.8246 -3.4302 -0.3368 12 6 8.3589 -4.8603 -0.4401 13 6 7.9674 -5.6429 0.8150 14 6 7.7602 -5.5406 -1.6728 15 6 9.8605 -4.8277 -0.5632 16 1 10.3816 -3.8818 -0.5678 17 6 10.5691 -6.0057 -0.6700 18 7 9.9346 -7.1576 -0.6640 19 14 12.4304 -5.9655 -0.8234 20 1 12.8981 -4.5561 -0.8057 21 1 13.0368 -6.7031 0.3139 22 1 12.8357 -6.6050 -2.1008 23 6 2.2143 -1.1889 0.0047 24 1 -0.3634 0.0041 1.0276 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3634 -0.8920 -0.5103 27 1 1.6949 2.1386 0.0007 28 1 4.1537 2.0840 -0.0086 29 1 3.8674 -3.1888 0.0767 30 1 5.8969 -4.3115 -0.2121 31 1 8.1035 -2.8732 -1.2311 32 1 8.2511 -2.9452 0.5412 33 1 6.8814 -5.6663 0.9045 34 1 8.3484 -6.6614 0.7416 35 1 8.3939 -5.1581 1.6932 36 1 8.0391 -4.9830 -2.5669 37 1 8.1405 -6.5594 -1.7461 38 1 6.6742 -5.5640 -1.5833 39 1 10.4331 -7.9864 -0.7388 40 1 1.6941 -2.1353 0.0081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459533902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:26 Heat of formation + Delta-G solvation = 10.767639 kcal Electronic energy + Delta-G solvation = -21083.813610 eV Core-core repulsion = 17898.954940 eV Total energy + Delta-G solvation = -3184.858671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.72234 -39.16900 -36.53635 -34.76569 -33.81358 -33.17606 -30.97143 -29.72095 -28.00267 -25.72244 -25.63933 -24.93343 -23.34592 -22.45883 -20.27386 -18.79190 -18.47236 -17.29263 -16.10739 -15.97328 -15.70898 -15.37403 -14.77863 -14.61771 -14.24840 -14.08768 -13.58288 -13.30894 -12.88465 -12.82926 -12.70712 -12.68409 -12.17771 -11.85842 -11.42079 -11.20170 -10.90995 -10.64811 -10.61462 -10.34899 -10.21355 -10.01161 -9.62623 -9.55974 -9.33617 -8.94002 -8.77187 -8.49072 -8.36510 -8.08530 -6.01741 -4.11405 1.12731 1.27690 2.74681 3.28174 3.36751 3.42091 3.49573 4.01706 4.27556 4.41381 4.51761 4.65262 4.92134 5.02690 5.07351 5.25340 5.26155 5.35348 5.49637 5.73060 5.79128 6.16815 6.19115 6.34071 6.36827 6.50413 6.73915 6.80859 6.82551 6.92112 7.03568 7.06844 7.11556 7.37744 7.56263 7.70591 8.01636 8.03226 8.13856 8.38316 8.46572 8.88733 9.00909 9.54448 10.99790 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046684 B = 0.003193 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.632436 B = 8766.391595 C = 9163.242114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.017 4.017 3 C -0.219 4.219 4 C 0.137 3.863 5 N -0.476 5.476 6 C 0.392 3.608 7 N -0.674 5.674 8 C 0.685 3.315 9 O -0.535 6.535 10 N -0.729 5.729 11 C 0.150 3.850 12 C 0.056 3.944 13 C -0.130 4.130 14 C -0.130 4.130 15 C -0.504 4.504 16 H 0.059 0.941 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.220 4.220 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.131 0.869 28 H 0.156 0.844 29 H 0.411 0.589 30 H 0.393 0.607 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.005 0.995 34 H 0.085 0.915 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.085 0.915 38 H 0.005 0.995 39 H 0.259 0.741 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.813 9.046 1.405 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.025 4.025 3 C -0.241 4.241 4 C -0.021 4.021 5 N -0.191 5.191 6 C 0.159 3.841 7 N -0.322 5.322 8 C 0.384 3.616 9 O -0.407 6.407 10 N -0.385 5.385 11 C 0.028 3.972 12 C 0.055 3.945 13 C -0.188 4.188 14 C -0.188 4.188 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.135 4.135 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.244 4.244 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.149 0.851 28 H 0.173 0.827 29 H 0.246 0.754 30 H 0.228 0.772 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.024 0.976 39 H 0.069 0.931 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.145 9.733 1.359 19.762 hybrid contribution -0.346 -0.930 -0.034 0.993 sum -17.491 8.803 1.325 19.626 Atomic orbital electron populations 1.20803 0.90300 1.03201 1.02774 1.20007 0.96360 0.92345 0.93825 1.21883 0.95631 0.98394 1.08210 1.22693 0.91339 0.95598 0.92472 1.67770 1.39375 0.96805 1.15136 1.18225 0.87250 0.86244 0.92393 1.42901 1.06824 1.07044 1.75465 1.16181 0.80572 0.85621 0.79220 1.91015 1.67210 1.28469 1.53997 1.45581 1.09428 1.06154 1.77337 1.21634 0.74740 1.00484 1.00367 1.18371 0.95303 0.87979 0.92812 1.21827 0.95347 1.04156 0.97479 1.21822 0.95058 1.04115 0.97792 1.21031 0.90298 0.92869 1.50093 0.92299 1.24881 0.98380 0.95445 0.94842 1.69815 1.34900 0.97242 1.50579 0.86511 0.85612 0.78200 0.77553 1.19711 1.21073 1.21080 1.21258 0.92391 0.99448 1.11264 0.90574 0.91034 0.91125 0.85138 0.82664 0.75371 0.77227 0.92767 0.92753 0.97589 0.89601 0.95402 0.95407 0.89622 0.97582 0.93086 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.06 36.00 0.36 -0.34 16 2 C -0.02 -0.17 5.91 -104.36 -0.62 -0.78 16 3 C -0.22 -2.19 9.81 -39.42 -0.39 -2.58 16 4 C 0.14 1.75 11.17 -17.56 -0.20 1.56 16 5 N -0.48 -7.99 7.89 -12.37 -0.10 -8.09 16 6 C 0.39 5.74 7.42 -154.72 -1.15 4.60 16 7 N -0.67 -9.70 5.39 -15.81 -0.09 -9.79 16 8 C 0.68 12.82 8.52 -86.92 -0.74 12.08 16 9 O -0.54 -12.25 14.61 5.29 0.08 -12.18 16 10 N -0.73 -13.26 4.96 -65.23 -0.32 -13.58 16 11 C 0.15 3.26 4.50 -4.04 -0.02 3.24 16 12 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 13 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 14 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 15 C -0.50 -13.28 8.01 -34.44 -0.28 -13.56 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 18 N -0.89 -23.63 9.35 55.43 0.52 -23.11 16 19 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.22 -2.39 9.64 -39.24 -0.38 -2.77 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 26 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 27 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 28 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.41 4.23 8.72 -40.82 -0.36 3.87 16 30 H 0.39 6.25 6.18 -40.82 -0.25 6.00 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 34 H 0.09 2.13 6.07 -51.93 -0.31 1.82 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 38 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 39 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -31.96 327.83 -8.68 -40.64 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.72 Total: 6.31 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -2.97 Total: -0.95 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.01 Total: -54.57 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.18 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.96 -8.68 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459533902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.409 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds