Wall clock time and date at job start Mon Mar 30 2020 01:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38840 * 120.75379 * 2 1 4 4 C 1.38062 * 119.31408 * 180.24690 * 3 2 1 5 5 N 1.31953 * 120.84857 * 359.77184 * 4 3 2 6 6 C 1.32345 * 121.62879 * 359.97438 * 5 4 3 7 7 N 1.39393 * 119.69209 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00349 * 354.89038 * 7 6 5 9 9 O 1.21585 * 119.99804 * 5.08595 * 8 7 6 10 10 N 1.34773 * 120.00658 * 185.09270 * 8 7 6 11 11 C 1.46497 * 120.00411 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46915 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.47079 * 299.99621 * 12 11 10 14 14 C 1.52994 * 109.47340 * 60.00273 * 12 11 10 15 15 C 1.50698 * 109.46626 * 180.02562 * 12 11 10 16 16 H 1.08000 * 120.00324 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99937 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99767 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00441 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.46735 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46949 * 119.99712 * 19 17 15 22 22 H 1.48493 * 109.46949 * 240.00227 * 19 17 15 23 23 C 1.38342 * 120.74890 * 179.77273 * 2 1 3 24 24 H 1.08999 * 109.47758 * 270.22752 * 1 2 3 25 25 H 1.09004 * 109.47317 * 30.23051 * 1 2 3 26 26 H 1.09002 * 109.47409 * 150.22376 * 1 2 3 27 27 H 1.08001 * 120.34415 * 0.04441 * 3 2 1 28 28 H 1.07998 * 119.58177 * 179.79112 * 4 3 2 29 29 H 0.97003 * 119.99977 * 174.88924 * 7 6 5 30 30 H 0.97008 * 119.99549 * 359.97438 * 10 8 7 31 31 H 1.08992 * 109.47057 * 299.99671 * 11 10 8 32 32 H 1.08996 * 109.46854 * 60.00322 * 11 10 8 33 33 H 1.08998 * 109.46751 * 60.00442 * 13 12 11 34 34 H 1.08996 * 109.46977 * 180.02562 * 13 12 11 35 35 H 1.08993 * 109.47155 * 300.00693 * 13 12 11 36 36 H 1.08997 * 109.47232 * 59.99463 * 14 12 11 37 37 H 1.08996 * 109.46837 * 180.02562 * 14 12 11 38 38 H 1.08998 * 109.47027 * 299.99887 * 14 12 11 39 39 H 0.97009 * 120.00164 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.45508 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1932 0.0000 4 6 3.5971 1.1585 -0.0052 5 7 4.2450 0.0090 -0.0056 6 6 3.6042 -1.1490 -0.0006 7 7 4.3293 -2.3394 -0.0018 8 6 5.6723 -2.3105 -0.1120 9 8 6.2589 -1.2455 -0.1172 10 7 6.3649 -3.4618 -0.2165 11 6 7.8246 -3.4302 -0.3368 12 6 8.3589 -4.8603 -0.4401 13 6 7.9674 -5.6429 0.8150 14 6 7.7602 -5.5406 -1.6728 15 6 9.8605 -4.8277 -0.5632 16 1 10.3816 -3.8818 -0.5678 17 6 10.5691 -6.0057 -0.6700 18 7 9.9346 -7.1576 -0.6640 19 14 12.4304 -5.9655 -0.8234 20 1 12.8981 -4.5561 -0.8057 21 1 13.0368 -6.7031 0.3139 22 1 12.8357 -6.6050 -2.1008 23 6 2.2143 -1.1889 0.0047 24 1 -0.3634 0.0041 1.0276 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3634 -0.8920 -0.5103 27 1 1.6949 2.1386 0.0007 28 1 4.1537 2.0840 -0.0086 29 1 3.8674 -3.1888 0.0767 30 1 5.8969 -4.3115 -0.2121 31 1 8.1035 -2.8732 -1.2311 32 1 8.2511 -2.9452 0.5412 33 1 6.8814 -5.6663 0.9045 34 1 8.3484 -6.6614 0.7416 35 1 8.3939 -5.1581 1.6932 36 1 8.0391 -4.9830 -2.5669 37 1 8.1405 -6.5594 -1.7461 38 1 6.6742 -5.5640 -1.5833 39 1 10.4331 -7.9864 -0.7388 40 1 1.6941 -2.1353 0.0081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459533902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:26 Heat of formation + Delta-G solvation = -9.256035 kcal Electronic energy + Delta-G solvation = -21084.681902 eV Core-core repulsion = 17898.954940 eV Total energy + Delta-G solvation = -3185.726962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83308 -40.43748 -38.24689 -35.99669 -35.06767 -34.53187 -32.74685 -30.80812 -28.66996 -27.55928 -27.46885 -26.73147 -24.26093 -23.61577 -21.52973 -20.60216 -19.80189 -18.42603 -17.80469 -16.99695 -16.81788 -16.73981 -16.51003 -16.07298 -15.32428 -15.20699 -15.08782 -14.71410 -14.55931 -14.01052 -13.74023 -13.52239 -13.28635 -13.20381 -13.10969 -12.70433 -12.57118 -12.52718 -12.26207 -12.13956 -11.74323 -11.47863 -11.47191 -11.19704 -10.70395 -10.40290 -10.37407 -10.03020 -9.98602 -9.17417 -8.02721 -6.18029 0.21800 0.43205 1.41304 1.44920 1.51091 1.56832 2.15515 2.45867 3.00678 3.12026 3.21030 3.66593 3.88535 4.11266 4.23230 4.30962 4.42359 4.52289 4.70980 4.73492 4.83973 4.87838 4.93493 5.00083 5.06110 5.10442 5.19522 5.20276 5.36299 5.37919 5.49946 5.59177 5.67588 5.67667 5.82413 5.96350 6.15698 6.21736 6.43844 6.85429 6.86338 7.31920 7.49603 7.62674 8.96494 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046684 B = 0.003193 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.632436 B = 8766.391595 C = 9163.242114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.019 4.019 3 C -0.204 4.204 4 C 0.111 3.889 5 N -0.533 5.533 6 C 0.355 3.645 7 N -0.660 5.660 8 C 0.686 3.314 9 O -0.583 6.583 10 N -0.720 5.720 11 C 0.169 3.831 12 C 0.053 3.947 13 C -0.120 4.120 14 C -0.120 4.120 15 C -0.529 4.529 16 H 0.043 0.957 17 C 0.029 3.971 18 N -0.899 5.899 19 Si 0.945 3.055 20 H -0.277 1.277 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.207 4.207 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.164 0.836 28 H 0.165 0.835 29 H 0.430 0.570 30 H 0.407 0.593 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.063 0.937 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.260 0.740 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.755 9.089 1.501 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.028 4.028 3 C -0.225 4.225 4 C -0.046 4.046 5 N -0.248 5.248 6 C 0.123 3.877 7 N -0.310 5.310 8 C 0.386 3.614 9 O -0.459 6.459 10 N -0.377 5.377 11 C 0.044 3.956 12 C 0.053 3.947 13 C -0.178 4.178 14 C -0.178 4.178 15 C -0.567 4.567 16 H 0.062 0.938 17 C -0.171 4.171 18 N -0.537 5.537 19 Si 0.772 3.228 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.207 1.207 23 C -0.231 4.231 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.181 0.819 28 H 0.182 0.818 29 H 0.269 0.731 30 H 0.244 0.756 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.161 9.759 1.459 22.446 hybrid contribution 0.443 -0.847 -0.056 0.957 sum -19.717 8.912 1.403 21.683 Atomic orbital electron populations 1.20884 0.87200 1.04600 1.03999 1.20538 0.98430 0.91590 0.92193 1.22245 0.94509 1.00235 1.05527 1.22986 0.92982 0.94996 0.93662 1.67582 1.41890 0.98503 1.16872 1.18568 0.88641 0.85652 0.94822 1.42562 1.05087 1.08367 1.75002 1.16301 0.81868 0.84697 0.78583 1.90982 1.68742 1.30092 1.56039 1.45235 1.08024 1.06908 1.77491 1.21152 0.76793 0.99030 0.98581 1.18353 0.93939 0.88872 0.93583 1.21671 0.97333 1.02297 0.96526 1.21665 0.96988 1.02257 0.96883 1.21300 0.92310 0.92427 1.50697 0.93846 1.25436 1.01647 0.95277 0.94722 1.69909 1.35876 0.97406 1.50553 0.85707 0.81714 0.77796 0.77595 1.20138 1.20634 1.20653 1.21584 0.90699 1.01508 1.09275 0.89220 0.89591 0.89888 0.81884 0.81834 0.73087 0.75636 0.94696 0.94633 0.94301 0.91770 0.96387 0.96421 0.91783 0.94328 0.92996 0.81828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.06 71.23 0.72 -0.13 16 2 C -0.02 -0.31 5.91 -19.70 -0.12 -0.42 16 3 C -0.20 -3.57 9.81 22.37 0.22 -3.35 16 4 C 0.11 2.79 11.17 84.63 0.95 3.74 16 5 N -0.53 -18.16 7.89 -193.04 -1.52 -19.68 16 6 C 0.35 10.13 7.42 132.93 0.99 11.11 16 7 N -0.66 -18.41 5.39 -322.20 -1.74 -20.15 16 8 C 0.69 25.84 8.52 179.06 1.53 27.37 16 9 O -0.58 -27.67 14.61 -3.98 -0.06 -27.73 16 10 N -0.72 -25.88 4.96 -478.55 -2.37 -28.26 16 11 C 0.17 7.47 4.50 86.38 0.39 7.86 16 12 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 13 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 14 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 15 C -0.53 -28.41 8.01 25.60 0.21 -28.21 16 16 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 17 C 0.03 1.54 5.15 84.66 0.44 1.97 16 18 N -0.90 -48.00 9.35 21.45 0.20 -47.80 16 19 Si 0.94 43.08 29.54 68.60 2.03 45.11 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 C -0.21 -3.96 9.64 22.49 0.22 -3.74 16 24 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.09 0.46 8.10 -2.39 -0.02 0.44 16 26 H 0.08 0.48 8.10 -2.39 -0.02 0.46 16 27 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 28 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.43 7.98 8.72 -92.71 -0.81 7.17 16 30 H 0.41 12.18 6.18 -92.70 -0.57 11.61 16 31 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.42 6.86 -2.39 -0.02 1.41 16 34 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 38 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 39 H 0.26 13.34 8.31 -92.70 -0.77 12.57 16 40 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -71.78 327.83 2.87 -68.90 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.32 Total: 20.51 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 6.66 Total: 9.10 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.43 Total: -115.89 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.06 Total: -27.73 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -71.78 2.87 -68.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459533902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.647 kcal (2) G-P(sol) polarization free energy of solvation -71.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds