Wall clock time and date at job start Mon Mar 30 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38292 * 126.31556 * 2 1 4 4 C 1.46964 * 126.44062 * 0.02562 * 3 2 1 5 5 C 1.35044 * 119.99835 * 225.51363 * 4 3 2 6 6 C 1.41825 * 120.00207 * 10.05351 * 5 4 3 7 7 O 1.21738 * 120.00120 * 6.44425 * 6 5 4 8 8 N 1.34775 * 120.00171 * 186.43838 * 6 5 4 9 9 C 1.46507 * 120.00071 * 0.02562 * 8 6 5 10 10 C 1.46499 * 120.00310 * 180.02562 * 8 6 5 11 11 H 1.09003 * 109.46850 * 0.02562 * 10 8 6 12 12 C 1.53001 * 109.47050 * 120.00043 * 10 8 6 13 13 C 1.50699 * 109.47580 * 240.00271 * 10 8 6 14 14 H 1.08006 * 119.99683 * 0.02562 * 13 10 8 15 15 C 1.37875 * 120.00389 * 179.97438 * 13 10 8 16 16 N 1.31515 * 119.99607 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00176 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.46922 * 59.99997 * 17 15 13 19 19 H 1.48496 * 109.47223 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47053 * 300.00204 * 17 15 13 21 21 C 1.41441 * 107.11352 * 180.12790 * 3 2 1 22 22 N 1.30435 * 108.03880 * 359.63300 * 21 3 2 23 23 N 1.34394 * 126.32272 * 179.72123 * 2 1 3 24 24 C 1.46505 * 125.74072 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47485 * 270.30133 * 1 2 3 26 26 H 1.09002 * 109.47349 * 30.30621 * 1 2 3 27 27 H 1.09004 * 109.46748 * 150.30133 * 1 2 3 28 28 H 1.07999 * 119.99963 * 45.52108 * 4 3 2 29 29 H 1.08000 * 119.99812 * 190.05996 * 5 4 3 30 30 H 1.08999 * 109.46741 * 89.99665 * 9 8 6 31 31 H 1.08998 * 109.47013 * 209.99573 * 9 8 6 32 32 H 1.08997 * 109.46653 * 329.99981 * 9 8 6 33 33 H 1.09002 * 109.47140 * 300.00018 * 12 10 8 34 34 H 1.08995 * 109.47215 * 60.00632 * 12 10 8 35 35 H 1.09007 * 109.46739 * 180.02562 * 12 10 8 36 36 H 0.97000 * 119.99506 * 179.97438 * 16 15 13 37 37 H 1.07998 * 125.97658 * 179.88699 * 21 3 2 38 38 H 1.09003 * 109.46981 * 269.99913 * 24 23 2 39 39 H 1.08998 * 109.47162 * 29.99835 * 24 23 2 40 40 H 1.08999 * 109.47407 * 150.00160 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3260 1.1143 0.0000 4 6 1.8903 2.5179 0.0005 5 6 2.4725 3.4059 -0.8338 6 6 3.3471 2.9524 -1.8540 7 8 3.4823 1.7591 -2.0539 8 7 4.0285 3.8424 -2.6024 9 6 3.8662 5.2784 -2.3616 10 6 4.9315 3.3739 -3.6566 11 1 4.9209 2.2843 -3.6864 12 6 4.4686 3.9251 -5.0067 13 6 6.3306 3.8554 -3.3704 14 1 6.5275 4.4506 -2.4909 15 6 7.3593 3.5354 -4.2307 16 7 7.1196 2.8103 -5.3014 17 14 9.0933 4.1329 -3.8763 18 1 9.5426 3.5989 -2.5654 19 1 10.0086 3.6580 -4.9448 20 1 9.1071 5.6174 -3.8371 21 6 3.6617 0.6491 -0.0030 22 7 3.6352 -0.6549 0.0033 23 7 2.3030 -1.0828 0.0053 24 6 1.8518 -2.4766 0.0126 25 1 -0.3634 0.0054 1.0276 26 1 -0.3634 0.8872 -0.5186 27 1 -0.3633 -0.8927 -0.5092 28 1 1.1046 2.8392 0.6682 29 1 2.2723 4.4615 -0.7241 30 1 4.6005 5.6088 -1.6270 31 1 4.0152 5.8222 -3.2944 32 1 2.8622 5.4722 -1.9843 33 1 3.4567 3.5768 -5.2137 34 1 4.4790 5.0146 -4.9772 35 1 5.1403 3.5762 -5.7911 36 1 7.8433 2.5855 -5.9069 37 1 4.5483 1.2658 -0.0055 38 1 1.7403 -2.8170 1.0421 39 1 0.8930 -2.5508 -0.5005 40 1 2.5864 -3.0990 -0.4983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492300477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:25 Heat of formation + Delta-G solvation = 75.823073 kcal Electronic energy + Delta-G solvation = -21845.202978 eV Core-core repulsion = 18663.165322 eV Total energy + Delta-G solvation = -3182.037655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84493 -39.00294 -35.43132 -33.61269 -33.01029 -32.66859 -30.99304 -29.27346 -26.67366 -26.43730 -25.89398 -25.12168 -23.29091 -21.00891 -19.80536 -19.28392 -17.61704 -16.73289 -16.22729 -16.00893 -15.40417 -15.00075 -14.43806 -14.23944 -13.79145 -13.62992 -13.29107 -13.08278 -12.89544 -12.50041 -12.44190 -12.28803 -12.13279 -12.04684 -11.80510 -11.44561 -11.19486 -10.97428 -10.75126 -10.61422 -10.26686 -10.14755 -10.08287 -9.45880 -9.08194 -8.93751 -8.62417 -8.34104 -7.42463 -7.32793 -5.99027 -4.06613 1.46526 2.32122 2.82449 3.33090 3.37921 3.40066 3.48638 4.20850 4.28746 4.49915 4.71588 4.78794 5.05488 5.14573 5.27851 5.30889 5.33529 5.42765 5.44710 5.60670 5.73390 5.76633 5.97661 6.16767 6.19257 6.22338 6.40078 6.64585 6.71859 6.86021 6.93801 7.11022 7.17153 7.34055 7.59687 7.66954 7.81964 8.12465 8.17743 8.30528 8.71214 8.94160 9.28524 9.60296 11.06103 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.004889 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.723561 B = 5726.028692 C = 6327.356595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.087 3.913 3 C -0.209 4.209 4 C 0.010 3.990 5 C -0.221 4.221 6 C 0.529 3.471 7 O -0.543 6.543 8 N -0.592 5.592 9 C 0.088 3.912 10 C 0.259 3.741 11 H 0.063 0.937 12 C -0.146 4.146 13 C -0.522 4.522 14 H 0.057 0.943 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.137 3.863 22 N -0.312 5.312 23 N -0.378 5.378 24 C 0.105 3.895 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.009 0.991 34 H 0.029 0.971 35 H 0.092 0.908 36 H 0.262 0.738 37 H 0.176 0.824 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.516 -2.032 10.955 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C -0.220 4.220 4 C -0.011 4.011 5 C -0.243 4.243 6 C 0.319 3.681 7 O -0.423 6.423 8 N -0.323 5.323 9 C -0.056 4.056 10 C 0.158 3.842 11 H 0.080 0.920 12 C -0.205 4.205 13 C -0.561 4.561 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.725 3.275 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.051 4.051 22 N -0.132 5.132 23 N -0.160 5.160 24 C -0.037 4.037 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.048 0.952 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.193 0.807 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.649 -3.961 10.640 17.753 hybrid contribution 0.607 1.315 -0.060 1.450 sum -13.042 -2.646 10.579 17.000 Atomic orbital electron populations 1.20390 0.87718 1.03673 1.02727 1.21323 0.93767 0.87234 1.01755 1.18940 0.92459 0.92341 1.18271 1.21500 0.94869 0.90400 0.94368 1.22307 1.03323 0.99971 0.98651 1.17163 0.81275 0.86504 0.83117 1.90815 1.65907 1.15467 1.70150 1.48228 1.43060 1.05367 1.35631 1.21554 0.99289 0.83030 1.01754 1.18856 0.86407 0.97039 0.81879 0.91952 1.22088 0.97997 0.98667 1.01739 1.21297 0.92241 1.33799 1.08734 0.92429 1.24890 0.98955 0.94977 0.94990 1.69878 1.32410 1.37529 1.12940 0.86578 0.84033 0.78938 0.77954 1.20263 1.21258 1.20298 1.23700 0.97083 0.91050 0.93241 1.77101 0.95431 1.13753 1.26879 1.47979 1.04224 1.05404 1.58346 1.21708 1.00697 0.78684 1.02585 0.90487 0.89816 0.91400 0.86059 0.85665 0.93513 0.91249 0.92855 0.97143 0.95233 0.88984 0.92764 0.80695 0.91331 0.90107 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.93 36.00 0.36 -0.47 16 2 C 0.09 1.28 7.02 -81.45 -0.57 0.71 16 3 C -0.21 -3.52 4.56 -105.12 -0.48 -4.00 16 4 C 0.01 0.14 9.77 -37.18 -0.36 -0.22 16 5 C -0.22 -3.53 9.11 -39.35 -0.36 -3.88 16 6 C 0.53 11.23 7.06 -14.89 -0.11 11.12 16 7 O -0.54 -13.43 11.33 5.15 0.06 -13.37 16 8 N -0.59 -13.01 2.75 -178.61 -0.49 -13.50 16 9 C 0.09 1.52 9.41 59.85 0.56 2.08 16 10 C 0.26 6.81 2.64 -69.08 -0.18 6.63 16 11 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 12 C -0.15 -3.63 8.95 37.16 0.33 -3.30 16 13 C -0.52 -14.47 8.37 -34.44 -0.29 -14.76 16 14 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 15 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 16 N -0.89 -25.88 11.32 55.43 0.63 -25.25 16 17 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.14 2.68 8.96 -16.93 -0.15 2.53 16 22 N -0.31 -6.12 12.49 30.89 0.39 -5.73 16 23 N -0.38 -5.95 3.98 -63.24 -0.25 -6.20 16 24 C 0.11 1.09 11.25 59.85 0.67 1.76 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.77 7.98 -51.93 -0.41 0.35 16 27 H 0.07 0.54 7.06 -51.93 -0.37 0.18 16 28 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.13 1.60 6.04 -52.49 -0.32 1.29 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 32 H 0.05 0.73 6.01 -51.93 -0.31 0.41 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 35 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.18 3.55 7.75 -52.49 -0.41 3.14 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.63 7.02 -51.93 -0.36 0.26 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 327.70 15.07 4.94 4.94 Total: -1.00 -35.00 327.70 -6.03 -41.03 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.61 Total: 1.62 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.67 Total: -0.09 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 0.27 Total: -50.68 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.06 Total: -13.37 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.00 -6.03 -41.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492300477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.852 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds