Wall clock time and date at job start Mon Mar 30 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38292 * 126.31556 * 2 1 4 4 C 1.46964 * 126.44062 * 0.02562 * 3 2 1 5 5 C 1.35044 * 119.99835 * 225.51363 * 4 3 2 6 6 C 1.41825 * 120.00207 * 10.05351 * 5 4 3 7 7 O 1.21738 * 120.00120 * 6.44425 * 6 5 4 8 8 N 1.34775 * 120.00171 * 186.43838 * 6 5 4 9 9 C 1.46507 * 120.00071 * 0.02562 * 8 6 5 10 10 C 1.46499 * 120.00310 * 180.02562 * 8 6 5 11 11 H 1.09003 * 109.46850 * 0.02562 * 10 8 6 12 12 C 1.53001 * 109.47050 * 120.00043 * 10 8 6 13 13 C 1.50699 * 109.47580 * 240.00271 * 10 8 6 14 14 H 1.08006 * 119.99683 * 0.02562 * 13 10 8 15 15 C 1.37875 * 120.00389 * 179.97438 * 13 10 8 16 16 N 1.31515 * 119.99607 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00176 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.46922 * 59.99997 * 17 15 13 19 19 H 1.48496 * 109.47223 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47053 * 300.00204 * 17 15 13 21 21 C 1.41441 * 107.11352 * 180.12790 * 3 2 1 22 22 N 1.30435 * 108.03880 * 359.63300 * 21 3 2 23 23 N 1.34394 * 126.32272 * 179.72123 * 2 1 3 24 24 C 1.46505 * 125.74072 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47485 * 270.30133 * 1 2 3 26 26 H 1.09002 * 109.47349 * 30.30621 * 1 2 3 27 27 H 1.09004 * 109.46748 * 150.30133 * 1 2 3 28 28 H 1.07999 * 119.99963 * 45.52108 * 4 3 2 29 29 H 1.08000 * 119.99812 * 190.05996 * 5 4 3 30 30 H 1.08999 * 109.46741 * 89.99665 * 9 8 6 31 31 H 1.08998 * 109.47013 * 209.99573 * 9 8 6 32 32 H 1.08997 * 109.46653 * 329.99981 * 9 8 6 33 33 H 1.09002 * 109.47140 * 300.00018 * 12 10 8 34 34 H 1.08995 * 109.47215 * 60.00632 * 12 10 8 35 35 H 1.09007 * 109.46739 * 180.02562 * 12 10 8 36 36 H 0.97000 * 119.99506 * 179.97438 * 16 15 13 37 37 H 1.07998 * 125.97658 * 179.88699 * 21 3 2 38 38 H 1.09003 * 109.46981 * 269.99913 * 24 23 2 39 39 H 1.08998 * 109.47162 * 29.99835 * 24 23 2 40 40 H 1.08999 * 109.47407 * 150.00160 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3260 1.1143 0.0000 4 6 1.8903 2.5179 0.0005 5 6 2.4725 3.4059 -0.8338 6 6 3.3471 2.9524 -1.8540 7 8 3.4823 1.7591 -2.0539 8 7 4.0285 3.8424 -2.6024 9 6 3.8662 5.2784 -2.3616 10 6 4.9315 3.3739 -3.6566 11 1 4.9209 2.2843 -3.6864 12 6 4.4686 3.9251 -5.0067 13 6 6.3306 3.8554 -3.3704 14 1 6.5275 4.4506 -2.4909 15 6 7.3593 3.5354 -4.2307 16 7 7.1196 2.8103 -5.3014 17 14 9.0933 4.1329 -3.8763 18 1 9.5426 3.5989 -2.5654 19 1 10.0086 3.6580 -4.9448 20 1 9.1071 5.6174 -3.8371 21 6 3.6617 0.6491 -0.0030 22 7 3.6352 -0.6549 0.0033 23 7 2.3030 -1.0828 0.0053 24 6 1.8518 -2.4766 0.0126 25 1 -0.3634 0.0054 1.0276 26 1 -0.3634 0.8872 -0.5186 27 1 -0.3633 -0.8927 -0.5092 28 1 1.1046 2.8392 0.6682 29 1 2.2723 4.4615 -0.7241 30 1 4.6005 5.6088 -1.6270 31 1 4.0152 5.8222 -3.2944 32 1 2.8622 5.4722 -1.9843 33 1 3.4567 3.5768 -5.2137 34 1 4.4790 5.0146 -4.9772 35 1 5.1403 3.5762 -5.7911 36 1 7.8433 2.5855 -5.9069 37 1 4.5483 1.2658 -0.0055 38 1 1.7403 -2.8170 1.0421 39 1 0.8930 -2.5508 -0.5005 40 1 2.5864 -3.0990 -0.4983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492300477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:25 Heat of formation + Delta-G solvation = 51.870754 kcal Electronic energy + Delta-G solvation = -21846.241628 eV Core-core repulsion = 18663.165322 eV Total energy + Delta-G solvation = -3183.076306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.08842 -40.59718 -37.19232 -34.89927 -34.76875 -34.03485 -32.21741 -31.04697 -27.81145 -27.54479 -27.38948 -27.18078 -24.76237 -22.58380 -21.24889 -20.59679 -19.08248 -18.45989 -18.03259 -17.31989 -16.79636 -16.47124 -15.98921 -15.89571 -15.10759 -15.01237 -14.46605 -14.40920 -14.10752 -13.88477 -13.78345 -13.52634 -13.38029 -13.21131 -13.16557 -12.92819 -12.86637 -12.71059 -12.63223 -12.42411 -12.16159 -12.10657 -11.53253 -11.16153 -10.73851 -10.54523 -10.30778 -10.00808 -9.13055 -8.62747 -8.13009 -6.29808 0.26596 1.08480 1.39274 1.42402 1.49590 1.77226 2.14550 2.37155 2.72628 2.77537 3.14043 3.70440 3.84423 4.16902 4.18319 4.32903 4.39556 4.43430 4.49804 4.63270 4.69783 4.74274 4.81298 4.87931 4.88816 4.94403 5.07813 5.09719 5.11596 5.13876 5.44410 5.48148 5.56747 5.73369 5.73810 5.83779 6.13176 6.19980 6.30536 6.79550 6.86952 7.04198 7.37445 7.71113 8.90616 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.004889 C = 0.004424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.723561 B = 5726.028692 C = 6327.356595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.100 3.900 3 C -0.244 4.244 4 C 0.042 3.958 5 C -0.243 4.243 6 C 0.519 3.481 7 O -0.592 6.592 8 N -0.605 5.605 9 C 0.085 3.915 10 C 0.265 3.735 11 H 0.002 0.998 12 C -0.131 4.131 13 C -0.535 4.535 14 H 0.058 0.942 15 C 0.013 3.987 16 N -0.920 5.920 17 Si 0.964 3.036 18 H -0.279 1.279 19 H -0.283 1.283 20 H -0.260 1.260 21 C 0.112 3.888 22 N -0.361 5.361 23 N -0.380 5.380 24 C 0.093 3.907 25 H 0.110 0.890 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.177 0.823 29 H 0.164 0.836 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.016 0.984 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.263 0.737 37 H 0.147 0.853 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.231 -0.811 12.747 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 C -0.255 4.255 4 C 0.021 3.979 5 C -0.264 4.264 6 C 0.312 3.688 7 O -0.475 6.475 8 N -0.335 5.335 9 C -0.057 4.057 10 C 0.163 3.837 11 H 0.020 0.980 12 C -0.189 4.189 13 C -0.573 4.573 14 H 0.076 0.924 15 C -0.187 4.187 16 N -0.559 5.559 17 Si 0.789 3.211 18 H -0.205 1.205 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.074 4.074 22 N -0.182 5.182 23 N -0.162 5.162 24 C -0.047 4.047 25 H 0.128 0.872 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.194 0.806 29 H 0.181 0.819 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.117 0.883 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.164 0.836 38 H 0.113 0.887 39 H 0.132 0.868 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.378 -2.710 12.450 20.751 hybrid contribution 1.373 0.741 -0.566 1.660 sum -15.005 -1.969 11.884 19.242 Atomic orbital electron populations 1.20630 0.83319 1.05088 1.05200 1.22197 0.96134 0.86024 0.98573 1.19354 0.91474 0.94711 1.19996 1.22033 0.94144 0.88507 0.93204 1.22260 1.03587 1.02196 0.98372 1.18092 0.81243 0.85785 0.83665 1.90801 1.67537 1.17612 1.71583 1.48229 1.42643 1.07637 1.35004 1.21786 1.02145 0.79928 1.01839 1.18376 0.87446 0.93691 0.84229 0.97973 1.21861 0.97477 0.99551 1.00048 1.21565 0.93322 1.33741 1.08687 0.92393 1.25757 1.03088 0.95047 0.94759 1.70034 1.33539 1.38530 1.13822 0.85528 0.78908 0.79232 0.77455 1.20467 1.20877 1.18473 1.23488 0.97899 0.91381 0.94650 1.76951 0.98532 1.14031 1.28665 1.48414 1.03084 1.07566 1.57111 1.22145 1.01782 0.76063 1.04720 0.87214 0.88930 0.89488 0.80604 0.81875 0.93163 0.91741 0.88310 0.96449 0.93379 0.91707 0.92795 0.83604 0.88718 0.86770 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 9.93 71.23 0.71 -0.50 16 2 C 0.10 2.75 7.02 42.18 0.30 3.05 16 3 C -0.24 -8.08 4.56 -20.19 -0.09 -8.17 16 4 C 0.04 1.08 9.77 23.82 0.23 1.31 16 5 C -0.24 -7.25 9.11 22.42 0.20 -7.04 16 6 C 0.52 22.45 7.06 85.13 0.60 23.05 16 7 O -0.59 -30.99 11.33 -4.47 -0.05 -31.04 16 8 N -0.60 -27.01 2.75 -837.19 -2.30 -29.32 16 9 C 0.09 2.82 9.41 127.77 1.20 4.02 16 10 C 0.27 14.62 2.64 44.25 0.12 14.74 16 11 H 0.00 0.15 6.90 -2.39 -0.02 0.14 16 12 C -0.13 -6.68 8.95 71.98 0.64 -6.04 16 13 C -0.53 -30.58 8.37 25.60 0.21 -30.37 16 14 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 15 C 0.01 0.72 5.30 84.65 0.45 1.17 16 16 N -0.92 -55.64 11.32 21.45 0.24 -55.40 16 17 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 C 0.11 4.66 8.96 85.69 0.77 5.43 16 22 N -0.36 -14.87 12.49 -56.18 -0.70 -15.57 16 23 N -0.38 -11.72 3.98 -354.00 -1.41 -13.13 16 24 C 0.09 1.75 11.25 127.77 1.44 3.19 16 25 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.09 1.24 7.98 -2.39 -0.02 1.22 16 27 H 0.09 0.96 7.06 -2.38 -0.02 0.94 16 28 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 29 H 0.16 3.48 6.04 -2.91 -0.02 3.46 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 2.17 6.43 -2.39 -0.02 2.16 16 32 H 0.10 2.34 6.01 -2.39 -0.01 2.32 16 33 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 2.21 6.66 -2.39 -0.02 2.20 16 35 H 0.06 3.66 6.07 -2.38 -0.01 3.65 16 36 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.15 6.62 7.75 -2.91 -0.02 6.60 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 1.38 7.02 -2.39 -0.02 1.37 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -84.17 327.70 5.62 -78.55 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 1.04 Total: 15.01 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 6.78 Total: 3.83 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -4.17 Total: -113.42 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.05 Total: -31.04 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -84.17 5.62 -78.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492300477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.425 kcal (2) G-P(sol) polarization free energy of solvation -84.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds