Wall clock time and date at job start Mon Mar 30 2020 02:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38285 * 126.32237 * 2 1 4 4 C 1.46965 * 126.43761 * 0.04769 * 3 2 1 5 5 C 1.35046 * 120.00105 * 222.44732 * 4 3 2 6 6 C 1.41823 * 119.99422 * 9.37281 * 5 4 3 7 7 O 1.21741 * 120.00495 * 6.53046 * 6 5 4 8 8 N 1.34777 * 119.99597 * 186.53405 * 6 5 4 9 9 C 1.46495 * 120.00193 * 359.97438 * 8 6 5 10 10 C 1.46504 * 119.99860 * 179.97438 * 8 6 5 11 11 H 1.09001 * 109.47465 * 359.97438 * 10 8 6 12 12 C 1.53008 * 109.47037 * 240.00015 * 10 8 6 13 13 C 1.50706 * 109.47024 * 120.00115 * 10 8 6 14 14 H 1.07995 * 120.00186 * 32.15721 * 13 10 8 15 15 C 1.37876 * 119.99460 * 212.15773 * 13 10 8 16 16 N 1.31517 * 119.99770 * 178.66497 * 15 13 10 17 17 Si 1.86792 * 120.00532 * 358.65834 * 15 13 10 18 18 H 1.48506 * 109.47318 * 87.03874 * 17 15 13 19 19 H 1.48499 * 109.47540 * 207.04100 * 17 15 13 20 20 H 1.48502 * 109.47347 * 327.04217 * 17 15 13 21 21 C 1.41434 * 107.12026 * 180.18706 * 3 2 1 22 22 N 1.30449 * 108.03482 * 359.57501 * 21 3 2 23 23 N 1.34406 * 126.31725 * 179.72688 * 2 1 3 24 24 C 1.46497 * 125.73787 * 359.96398 * 23 2 1 25 25 H 1.08999 * 109.46659 * 270.29713 * 1 2 3 26 26 H 1.08996 * 109.46584 * 30.29780 * 1 2 3 27 27 H 1.08994 * 109.47135 * 150.29874 * 1 2 3 28 28 H 1.08003 * 119.99973 * 42.45445 * 4 3 2 29 29 H 1.07994 * 120.00188 * 189.36904 * 5 4 3 30 30 H 1.09007 * 109.47254 * 90.00170 * 9 8 6 31 31 H 1.09002 * 109.47277 * 209.99934 * 9 8 6 32 32 H 1.08999 * 109.47381 * 330.00209 * 9 8 6 33 33 H 1.09003 * 109.46707 * 294.45036 * 12 10 8 34 34 H 1.08997 * 109.46996 * 54.44996 * 12 10 8 35 35 H 1.09004 * 109.47090 * 174.45590 * 12 10 8 36 36 H 0.96993 * 120.00451 * 180.02562 * 16 15 13 37 37 H 1.07999 * 125.98241 * 179.84289 * 21 3 2 38 38 H 1.08998 * 109.47287 * 269.97416 * 24 23 2 39 39 H 1.09000 * 109.47726 * 29.97832 * 24 23 2 40 40 H 1.09004 * 109.46675 * 149.98017 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3261 1.1142 0.0000 4 6 1.8906 2.5178 0.0010 5 6 2.5141 3.4188 -0.7883 6 6 3.4503 2.9823 -1.7601 7 8 3.6046 1.7923 -1.9654 8 7 4.1692 3.8850 -2.4564 9 6 3.9832 5.3170 -2.2098 10 6 5.1366 3.4341 -3.4599 11 1 5.1358 2.3449 -3.5019 12 6 6.5339 3.9283 -3.0795 13 6 4.7573 3.9896 -4.8086 14 1 4.2751 4.9533 -4.8794 15 6 5.0260 3.2674 -5.9519 16 7 4.6714 3.7401 -7.1268 17 14 5.8938 1.6176 -5.8322 18 1 4.8902 0.5450 -5.6135 19 1 6.6329 1.3543 -7.0930 20 1 6.8483 1.6416 -4.6948 21 6 3.6618 0.6490 -0.0044 22 7 3.6352 -0.6552 0.0023 23 7 2.3031 -1.0830 0.0052 24 6 1.8517 -2.4766 0.0126 25 1 -0.3632 0.0053 1.0277 26 1 -0.3632 0.8873 -0.5184 27 1 -0.3633 -0.8926 -0.5092 28 1 1.0718 2.8287 0.6330 29 1 2.2999 4.4717 -0.6795 30 1 4.6702 5.6435 -1.4290 31 1 4.1839 5.8726 -3.1259 32 1 2.9571 5.5006 -1.8910 33 1 6.5614 5.0166 -3.1332 34 1 6.7683 3.6085 -2.0642 35 1 7.2671 3.5117 -3.7701 36 1 4.8601 3.2319 -7.9311 37 1 4.5484 1.2656 -0.0079 38 1 1.7407 -2.8172 1.0420 39 1 0.8926 -2.5508 -0.5001 40 1 2.5861 -3.0990 -0.4988 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492300478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:28 Heat of formation + Delta-G solvation = 51.470994 kcal Electronic energy + Delta-G solvation = -21981.769458 eV Core-core repulsion = 18798.675817 eV Total energy + Delta-G solvation = -3183.093641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.11170 -40.67437 -37.25559 -34.90832 -34.71221 -34.06047 -32.58001 -31.48887 -27.84796 -27.57757 -27.35712 -27.19542 -24.78305 -22.52175 -21.19837 -20.59221 -19.30504 -18.97287 -18.00480 -17.39271 -16.80088 -16.49149 -16.08479 -15.83313 -15.06382 -14.98832 -14.75376 -14.46987 -14.17485 -14.01547 -13.89499 -13.74091 -13.44015 -13.25296 -13.22086 -13.16674 -13.07743 -12.86050 -12.61088 -12.48976 -12.22527 -11.82690 -11.55728 -11.24022 -10.85067 -10.79409 -10.37377 -10.00015 -9.13868 -8.62757 -8.38375 -6.40499 0.22686 1.08135 1.22287 1.28356 1.37014 1.75817 2.17039 2.24962 2.53657 2.74250 3.06768 3.69472 3.82629 4.12804 4.17100 4.31064 4.38341 4.42091 4.46308 4.54920 4.62017 4.69207 4.74018 4.74623 4.79097 4.89143 4.93559 5.05318 5.08171 5.12447 5.17763 5.33278 5.47664 5.56675 5.65530 5.77946 5.92515 6.22586 6.28382 6.64568 6.86401 6.95207 7.25260 7.62543 8.77342 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.005727 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.178186 B = 4887.535041 C = 5585.539964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.101 3.899 3 C -0.251 4.251 4 C 0.045 3.955 5 C -0.247 4.247 6 C 0.523 3.477 7 O -0.592 6.592 8 N -0.600 5.600 9 C 0.081 3.919 10 C 0.227 3.773 11 H 0.032 0.968 12 C -0.139 4.139 13 C -0.515 4.515 14 H 0.054 0.946 15 C 0.029 3.971 16 N -0.937 5.937 17 Si 0.924 3.076 18 H -0.293 1.293 19 H -0.276 1.276 20 H -0.248 1.248 21 C 0.123 3.877 22 N -0.363 5.363 23 N -0.382 5.382 24 C 0.093 3.907 25 H 0.110 0.890 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.174 0.826 29 H 0.162 0.838 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.267 0.733 37 H 0.157 0.843 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.199 -4.605 19.401 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.029 4.029 3 C -0.262 4.262 4 C 0.024 3.976 5 C -0.268 4.268 6 C 0.317 3.683 7 O -0.476 6.476 8 N -0.330 5.330 9 C -0.061 4.061 10 C 0.124 3.876 11 H 0.050 0.950 12 C -0.198 4.198 13 C -0.554 4.554 14 H 0.072 0.928 15 C -0.170 4.170 16 N -0.577 5.577 17 Si 0.750 3.250 18 H -0.220 1.220 19 H -0.201 1.201 20 H -0.172 1.172 21 C -0.064 4.064 22 N -0.184 5.184 23 N -0.164 5.164 24 C -0.047 4.047 25 H 0.129 0.871 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.191 0.809 29 H 0.179 0.821 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.174 0.826 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.401 -6.450 19.076 22.223 hybrid contribution 0.482 0.055 -1.043 1.150 sum -8.919 -6.395 18.032 21.110 Atomic orbital electron populations 1.20635 0.83631 1.05001 1.05200 1.22200 0.96082 0.86253 0.98344 1.19380 0.91844 0.94512 1.20504 1.22015 0.94525 0.88490 0.92556 1.22195 1.02829 1.02201 0.99568 1.18041 0.81704 0.85583 0.82978 1.90781 1.69166 1.17778 1.69850 1.48195 1.39387 1.07694 1.37690 1.21837 1.02736 0.79977 1.01533 1.18899 0.86951 0.95202 0.86582 0.95010 1.22104 0.96823 1.01692 0.99174 1.21424 1.38763 1.05071 0.90138 0.92767 1.25559 0.95943 1.00321 0.95174 1.69984 1.48718 1.40376 0.98582 0.86128 0.79687 0.80927 0.78223 1.22000 1.20112 1.17225 1.23559 0.97922 0.91200 0.93680 1.76952 0.98317 1.14098 1.29038 1.48400 1.03220 1.07454 1.57285 1.22129 1.01721 0.76144 1.04703 0.87141 0.89094 0.89609 0.80868 0.82093 0.91173 0.92480 0.89099 0.91884 0.93605 0.93617 0.92383 0.82630 0.88693 0.87068 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 9.93 71.24 0.71 -0.55 16 2 C 0.10 2.67 7.02 42.18 0.30 2.97 16 3 C -0.25 -7.87 4.72 -20.19 -0.10 -7.97 16 4 C 0.05 1.11 9.78 23.82 0.23 1.34 16 5 C -0.25 -7.08 9.12 22.42 0.20 -6.88 16 6 C 0.52 21.42 6.98 85.13 0.59 22.02 16 7 O -0.59 -29.09 11.00 -4.48 -0.05 -29.14 16 8 N -0.60 -25.21 2.75 -837.17 -2.30 -27.52 16 9 C 0.08 2.59 9.33 127.77 1.19 3.78 16 10 C 0.23 11.32 2.20 44.25 0.10 11.42 16 11 H 0.03 1.79 4.47 -2.39 -0.01 1.78 16 12 C -0.14 -5.98 8.94 71.98 0.64 -5.34 16 13 C -0.52 -29.64 8.72 25.60 0.22 -29.41 16 14 H 0.05 3.31 6.83 -2.91 -0.02 3.29 16 15 C 0.03 1.74 5.47 84.65 0.46 2.21 16 16 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 17 Si 0.92 48.53 26.43 68.60 1.81 50.34 16 18 H -0.29 -16.19 7.11 99.48 0.71 -15.48 16 19 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.25 -12.37 6.09 99.48 0.61 -11.76 16 21 C 0.12 4.65 8.82 85.69 0.76 5.41 16 22 N -0.36 -13.87 12.49 -56.18 -0.70 -14.57 16 23 N -0.38 -11.21 3.98 -354.00 -1.41 -12.62 16 24 C 0.09 1.67 11.25 127.77 1.44 3.11 16 25 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.09 1.27 7.97 -2.39 -0.02 1.26 16 27 H 0.09 0.98 7.06 -2.39 -0.02 0.96 16 28 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 29 H 0.16 3.38 6.04 -2.91 -0.02 3.36 16 30 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.06 2.05 6.57 -2.39 -0.02 2.04 16 32 H 0.09 2.27 6.01 -2.39 -0.01 2.25 16 33 H 0.06 2.49 7.86 -2.39 -0.02 2.47 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 2.00 6.82 -2.38 -0.02 1.98 16 36 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 37 H 0.16 6.14 7.44 -2.91 -0.02 6.12 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.11 1.32 7.02 -2.39 -0.02 1.30 16 40 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -84.24 324.35 5.34 -78.90 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.94 Total: 11.26 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 6.75 Total: 2.10 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -4.12 Total: -113.47 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.05 Total: -29.14 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 1.81 Total: 50.34 kcal Total: -84.24 5.34 -78.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492300478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.376 kcal (2) G-P(sol) polarization free energy of solvation -84.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds