Wall clock time and date at job start Mon Mar 30 2020 01:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38839 * 120.34839 * 2 1 4 4 C 1.38361 * 118.49543 * 180.02562 * 3 2 1 5 5 C 1.39036 * 119.10180 * 0.02562 * 4 3 2 6 6 N 1.39406 * 119.69402 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99809 * 185.08931 * 6 5 4 8 8 O 1.21281 * 119.99971 * 355.18989 * 7 6 5 9 9 C 1.50698 * 119.99922 * 175.18524 * 7 6 5 10 10 C 1.53006 * 109.47315 * 180.02562 * 9 7 6 11 11 N 1.46898 * 109.47363 * 179.97438 * 10 9 7 12 12 C 1.46900 * 110.99995 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47209 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47159 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00168 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99904 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00134 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99796 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47567 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46886 * 120.00403 * 18 16 14 21 21 H 1.48502 * 109.47147 * 240.00062 * 18 16 14 22 22 N 1.32350 * 120.60586 * 0.27396 * 5 4 3 23 23 C 1.31933 * 121.63675 * 359.43382 * 22 5 4 24 24 H 1.08996 * 109.47010 * 89.99399 * 1 2 3 25 25 H 1.08994 * 109.47351 * 210.00347 * 1 2 3 26 26 H 1.09001 * 109.46821 * 329.99925 * 1 2 3 27 27 H 1.08004 * 120.75113 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.44527 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00351 * 5.37338 * 6 5 4 30 30 H 1.09004 * 109.46922 * 299.99838 * 9 7 6 31 31 H 1.08991 * 109.47488 * 60.00317 * 9 7 6 32 32 H 1.09009 * 109.46775 * 299.99897 * 10 9 7 33 33 H 1.08998 * 109.47292 * 59.99119 * 10 9 7 34 34 H 1.00899 * 110.99727 * 56.04149 * 11 10 9 35 35 H 1.09001 * 109.46927 * 300.00210 * 12 11 10 36 36 H 1.09001 * 109.47136 * 59.99877 * 12 11 10 37 37 H 1.09001 * 109.47042 * 300.00306 * 13 12 11 38 38 H 1.09001 * 109.47008 * 60.00000 * 13 12 11 39 39 H 0.96992 * 120.00130 * 179.97438 * 17 16 14 40 40 H 1.08003 * 119.57327 * 180.28776 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1981 0.0000 4 6 3.5913 1.1534 -0.0005 5 6 4.2279 -0.0827 -0.0016 6 7 5.6207 -0.1421 -0.0027 7 6 6.2443 -1.3324 -0.1073 8 8 5.5967 -2.3578 -0.1126 9 6 7.7461 -1.3891 -0.2178 10 6 8.1950 -2.8479 -0.3240 11 7 9.6590 -2.9032 -0.4323 12 6 10.1272 -4.2917 -0.5358 13 6 11.6530 -4.3085 -0.6473 14 6 12.1334 -5.7330 -0.7528 15 1 11.4215 -6.5451 -0.7418 16 6 13.4816 -5.9994 -0.8643 17 7 14.3484 -5.0104 -0.8781 18 14 14.0769 -7.7651 -0.9958 19 1 12.9115 -8.6846 -0.9574 20 1 14.8083 -7.9468 -2.2753 21 1 14.9843 -8.0674 0.1403 22 7 3.5237 -1.2033 -0.0076 23 6 2.2045 -1.1916 -0.0015 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6865 2.1437 -0.0004 28 1 4.1684 2.0663 -0.0001 29 1 6.1411 0.6727 0.0759 30 1 8.0658 -0.8453 -1.1068 31 1 8.1929 -0.9346 0.6664 32 1 7.8753 -3.3921 0.5648 33 1 7.7482 -3.3022 -1.2083 34 1 10.0971 -2.4310 0.3443 35 1 9.8212 -4.8454 0.3519 36 1 9.6934 -4.7564 -1.4212 37 1 11.9585 -3.7549 -1.5352 38 1 12.0871 -3.8436 0.2379 39 1 15.2968 -5.1979 -0.9562 40 1 1.6632 -2.1262 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515188211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:47 Heat of formation + Delta-G solvation = -4.017314 kcal Electronic energy + Delta-G solvation = -19816.801187 eV Core-core repulsion = 16631.301393 eV Total energy + Delta-G solvation = -3185.499794 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04115 -39.36110 -36.19201 -35.32429 -33.34967 -33.09011 -31.88340 -31.12302 -28.51270 -26.90082 -24.64124 -24.07905 -22.74889 -21.78922 -20.73229 -20.21300 -18.36214 -17.34545 -16.29621 -16.16200 -15.92086 -15.55098 -15.18386 -14.80714 -14.51892 -14.34155 -14.18160 -13.54594 -13.36665 -13.17400 -12.98731 -12.83666 -12.76562 -12.13556 -12.03446 -11.62327 -11.28939 -10.91879 -10.90159 -10.81264 -10.50072 -10.31326 -10.10881 -9.95727 -9.38692 -9.22664 -9.10232 -8.42174 -8.33346 -7.82812 -5.97793 -3.99876 0.77906 1.01902 2.54180 2.61156 3.33421 3.40644 3.45544 3.61007 4.07456 4.41148 4.46962 4.52041 4.63747 4.67780 4.80753 4.88269 5.06237 5.10809 5.21761 5.34214 5.38427 5.44587 5.51731 5.57097 5.62907 5.90180 6.01099 6.03794 6.17928 6.38813 6.47427 6.49881 6.91601 7.01047 7.46191 7.74568 7.77540 7.84224 7.97010 8.09995 8.11613 8.46393 9.07599 9.63871 11.13753 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.057799 B = 0.002164 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.323590 B =12933.118157 C =13373.520812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.177 4.177 3 C -0.050 4.050 4 C -0.207 4.207 5 C 0.358 3.642 6 N -0.666 5.666 7 C 0.504 3.496 8 O -0.468 6.468 9 C -0.136 4.136 10 C 0.073 3.927 11 N -0.693 5.693 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.520 4.520 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.474 5.474 23 C 0.133 3.867 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.417 0.583 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.334 0.666 35 H 0.017 0.983 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.680 17.174 2.998 31.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.181 4.181 3 C -0.076 4.076 4 C -0.230 4.230 5 C 0.127 3.873 6 N -0.313 5.313 7 C 0.290 3.710 8 O -0.336 6.336 9 C -0.176 4.176 10 C -0.057 4.057 11 N -0.324 5.324 12 C -0.062 4.062 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.187 5.187 23 C -0.025 4.025 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.254 0.746 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.151 0.849 35 H 0.035 0.965 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.385 15.672 2.263 29.919 hybrid contribution 0.184 0.115 0.888 0.914 sum -25.201 15.787 3.151 29.904 Atomic orbital electron populations 1.20637 0.90211 1.02908 1.02378 1.20856 0.97660 0.94170 1.05376 1.21234 0.93054 0.98229 0.95039 1.21471 0.95607 0.97028 1.08887 1.18554 0.84914 0.89724 0.94150 1.43796 1.03573 1.11335 1.72631 1.21149 0.90883 0.82841 0.76103 1.90823 1.67084 1.32601 1.43121 1.21677 0.89812 1.01154 1.04977 1.21634 0.89713 0.92882 1.01520 1.60610 1.03900 1.18771 1.49101 1.22162 0.99656 0.85458 0.98928 1.19083 0.87565 0.96929 0.97699 1.21235 0.92003 0.92551 1.50136 0.92642 1.25008 0.96953 0.97130 0.95356 1.69979 1.01839 1.30858 1.50665 0.86522 0.78759 0.85043 0.77592 1.19742 1.20987 1.21049 1.67701 1.07955 1.28529 1.14544 1.22619 0.88716 0.97651 0.93518 0.91193 0.91307 0.91591 0.84634 0.84637 0.74588 0.87646 0.88778 0.94940 0.90561 0.84867 0.96465 0.92204 0.95609 0.96784 0.93077 0.82581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.51 10.03 36.00 0.36 -0.15 16 2 C -0.18 -1.38 5.90 -104.46 -0.62 -2.00 16 3 C -0.05 -0.35 9.85 -39.31 -0.39 -0.73 16 4 C -0.21 -1.61 9.94 -39.24 -0.39 -2.01 16 5 C 0.36 3.99 7.42 -154.70 -1.15 2.84 16 6 N -0.67 -6.49 5.39 -11.43 -0.06 -6.55 16 7 C 0.50 6.48 7.79 -10.99 -0.09 6.40 16 8 O -0.47 -8.11 14.25 5.56 0.08 -8.03 16 9 C -0.14 -1.53 5.96 -27.88 -0.17 -1.70 16 10 C 0.07 1.13 4.97 -3.82 -0.02 1.11 16 11 N -0.69 -12.46 6.50 -113.77 -0.74 -13.20 16 12 C 0.07 1.44 5.62 -3.82 -0.02 1.42 16 13 C 0.02 0.65 5.23 -27.88 -0.15 0.51 16 14 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 18 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 N -0.47 -6.41 7.89 -12.37 -0.10 -6.51 16 23 C 0.13 1.38 10.85 -17.57 -0.19 1.19 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 26 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 27 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 28 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 29 H 0.42 2.31 8.70 -40.82 -0.36 1.96 16 30 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.54 8.10 -51.92 -0.42 0.12 16 33 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.33 5.57 8.73 -39.29 -0.34 5.23 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.16 1.32 8.06 -52.48 -0.42 0.89 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -36.04 343.35 -9.30 -45.34 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.15 Total: 0.21 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -3.22 Total: -6.97 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.16 Total: -52.73 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.08 Total: -8.03 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.04 -9.30 -45.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515188211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.320 kcal (2) G-P(sol) polarization free energy of solvation -36.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds