Wall clock time and date at job start Mon Mar 30 2020 01:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38839 * 120.34839 * 2 1 4 4 C 1.38361 * 118.49543 * 180.02562 * 3 2 1 5 5 C 1.39036 * 119.10180 * 0.02562 * 4 3 2 6 6 N 1.39406 * 119.69402 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99809 * 185.08931 * 6 5 4 8 8 O 1.21281 * 119.99971 * 355.18989 * 7 6 5 9 9 C 1.50698 * 119.99922 * 175.18524 * 7 6 5 10 10 C 1.53006 * 109.47315 * 180.02562 * 9 7 6 11 11 N 1.46898 * 109.47363 * 179.97438 * 10 9 7 12 12 C 1.46900 * 110.99995 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47209 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47159 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00168 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99904 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00134 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99796 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47567 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46886 * 120.00403 * 18 16 14 21 21 H 1.48502 * 109.47147 * 240.00062 * 18 16 14 22 22 N 1.32350 * 120.60586 * 0.27396 * 5 4 3 23 23 C 1.31933 * 121.63675 * 359.43382 * 22 5 4 24 24 H 1.08996 * 109.47010 * 89.99399 * 1 2 3 25 25 H 1.08994 * 109.47351 * 210.00347 * 1 2 3 26 26 H 1.09001 * 109.46821 * 329.99925 * 1 2 3 27 27 H 1.08004 * 120.75113 * 359.97438 * 3 2 1 28 28 H 1.08004 * 120.44527 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00351 * 5.37338 * 6 5 4 30 30 H 1.09004 * 109.46922 * 299.99838 * 9 7 6 31 31 H 1.08991 * 109.47488 * 60.00317 * 9 7 6 32 32 H 1.09009 * 109.46775 * 299.99897 * 10 9 7 33 33 H 1.08998 * 109.47292 * 59.99119 * 10 9 7 34 34 H 1.00899 * 110.99727 * 56.04149 * 11 10 9 35 35 H 1.09001 * 109.46927 * 300.00210 * 12 11 10 36 36 H 1.09001 * 109.47136 * 59.99877 * 12 11 10 37 37 H 1.09001 * 109.47042 * 300.00306 * 13 12 11 38 38 H 1.09001 * 109.47008 * 60.00000 * 13 12 11 39 39 H 0.96992 * 120.00130 * 179.97438 * 17 16 14 40 40 H 1.08003 * 119.57327 * 180.28776 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1981 0.0000 4 6 3.5913 1.1534 -0.0005 5 6 4.2279 -0.0827 -0.0016 6 7 5.6207 -0.1421 -0.0027 7 6 6.2443 -1.3324 -0.1073 8 8 5.5967 -2.3578 -0.1126 9 6 7.7461 -1.3891 -0.2178 10 6 8.1950 -2.8479 -0.3240 11 7 9.6590 -2.9032 -0.4323 12 6 10.1272 -4.2917 -0.5358 13 6 11.6530 -4.3085 -0.6473 14 6 12.1334 -5.7330 -0.7528 15 1 11.4215 -6.5451 -0.7418 16 6 13.4816 -5.9994 -0.8643 17 7 14.3484 -5.0104 -0.8781 18 14 14.0769 -7.7651 -0.9958 19 1 12.9115 -8.6846 -0.9574 20 1 14.8083 -7.9468 -2.2753 21 1 14.9843 -8.0674 0.1403 22 7 3.5237 -1.2033 -0.0076 23 6 2.2045 -1.1916 -0.0015 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6865 2.1437 -0.0004 28 1 4.1684 2.0663 -0.0001 29 1 6.1411 0.6727 0.0759 30 1 8.0658 -0.8453 -1.1068 31 1 8.1929 -0.9346 0.6664 32 1 7.8753 -3.3921 0.5648 33 1 7.7482 -3.3022 -1.2083 34 1 10.0971 -2.4310 0.3443 35 1 9.8212 -4.8454 0.3519 36 1 9.6934 -4.7564 -1.4212 37 1 11.9585 -3.7549 -1.5352 38 1 12.0871 -3.8436 0.2379 39 1 15.2968 -5.1979 -0.9562 40 1 1.6632 -2.1262 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515188211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:46 Heat of formation + Delta-G solvation = -29.586272 kcal Electronic energy + Delta-G solvation = -19817.909940 eV Core-core repulsion = 16631.301393 eV Total energy + Delta-G solvation = -3186.608548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.81212 -40.24061 -37.68940 -36.21549 -35.19635 -33.97584 -32.96104 -32.27119 -30.12079 -27.66588 -26.22275 -25.07094 -23.82065 -22.69694 -22.49850 -21.27694 -19.11961 -18.57160 -18.17212 -17.28034 -16.76558 -16.59354 -16.31592 -16.07743 -15.72650 -15.28756 -15.24083 -14.84233 -14.57308 -14.39889 -13.99611 -13.81910 -13.66787 -13.23080 -13.17352 -13.03069 -12.76698 -12.62208 -12.40200 -12.28841 -11.87109 -11.61232 -11.43697 -11.32236 -11.18938 -10.74320 -10.57080 -10.03469 -9.37284 -9.11904 -8.21217 -6.32202 0.09383 0.39527 1.39910 1.40409 1.53954 1.63210 1.83836 2.40355 2.91518 3.12063 3.19768 3.56877 3.78699 3.91680 4.01774 4.06918 4.12817 4.18397 4.29488 4.52649 4.58564 4.59092 4.65043 4.87901 4.90486 4.92548 4.93939 4.99436 5.04825 5.15880 5.36652 5.40307 5.43470 5.66655 5.76406 5.85557 6.07425 6.20831 6.23584 6.53930 6.84385 6.97079 7.35401 7.36739 8.91017 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.057799 B = 0.002164 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.323590 B =12933.118157 C =13373.520812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.168 4.168 3 C -0.052 4.052 4 C -0.192 4.192 5 C 0.322 3.678 6 N -0.651 5.651 7 C 0.505 3.495 8 O -0.524 6.524 9 C -0.122 4.122 10 C 0.077 3.923 11 N -0.689 5.689 12 C 0.081 3.919 13 C 0.033 3.967 14 C -0.547 4.547 15 H 0.057 0.943 16 C 0.002 3.998 17 N -0.929 5.929 18 Si 0.967 3.033 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.276 1.276 22 N -0.524 5.524 23 C 0.102 3.898 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.173 0.827 28 H 0.171 0.829 29 H 0.437 0.563 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.021 0.979 33 H 0.057 0.943 34 H 0.345 0.655 35 H 0.016 0.984 36 H 0.053 0.947 37 H -0.001 1.001 38 H -0.003 1.003 39 H 0.265 0.735 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.737 18.899 3.244 32.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.172 4.172 3 C -0.078 4.078 4 C -0.215 4.215 5 C 0.091 3.909 6 N -0.300 5.300 7 C 0.292 3.708 8 O -0.397 6.397 9 C -0.162 4.162 10 C -0.053 4.053 11 N -0.321 5.321 12 C -0.048 4.048 13 C -0.005 4.005 14 C -0.586 4.586 15 H 0.075 0.925 16 C -0.196 4.196 17 N -0.569 5.569 18 Si 0.791 3.209 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.201 1.201 22 N -0.239 5.239 23 C -0.055 4.055 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.190 0.810 28 H 0.188 0.812 29 H 0.278 0.722 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.163 0.837 35 H 0.034 0.966 36 H 0.072 0.928 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.073 0.927 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -26.466 17.462 2.519 31.808 hybrid contribution 0.420 -0.319 0.814 0.970 sum -26.046 17.143 3.333 31.359 Atomic orbital electron populations 1.20706 0.88050 1.04001 1.03210 1.21196 0.99200 0.93630 1.03144 1.21735 0.92952 0.99311 0.93792 1.21850 0.96285 0.96859 1.06526 1.18918 0.85192 0.90542 0.96205 1.43553 1.03601 1.11178 1.71654 1.21335 0.91236 0.83010 0.75191 1.90806 1.68185 1.34624 1.46058 1.21547 0.89020 0.98266 1.07337 1.21557 0.87684 0.95927 1.00133 1.60485 1.05515 1.16269 1.49808 1.21792 0.96534 0.87829 0.98597 1.18921 0.90552 0.95505 0.95505 1.21646 0.92669 0.93684 1.50581 0.92517 1.25951 0.97077 1.01970 0.94650 1.70095 1.02348 1.33300 1.51141 0.85373 0.78335 0.79229 0.77932 1.18945 1.20195 1.20114 1.67544 1.09581 1.30750 1.15985 1.22818 0.88264 0.99120 0.95290 0.90338 0.91020 0.89739 0.81003 0.81173 0.72243 0.85727 0.85708 0.96070 0.92398 0.83716 0.96562 0.92845 0.98262 0.98448 0.92653 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.03 71.23 0.71 -0.06 16 2 C -0.17 -2.39 5.90 -19.76 -0.12 -2.50 16 3 C -0.05 -0.58 9.85 22.44 0.22 -0.36 16 4 C -0.19 -2.51 9.94 22.49 0.22 -2.29 16 5 C 0.32 6.97 7.42 132.92 0.99 7.96 16 6 N -0.65 -11.98 5.39 -308.45 -1.66 -13.64 16 7 C 0.51 12.92 7.79 87.66 0.68 13.60 16 8 O -0.52 -19.00 14.25 -3.03 -0.04 -19.04 16 9 C -0.12 -2.59 5.96 29.85 0.18 -2.41 16 10 C 0.08 2.40 4.97 86.31 0.43 2.83 16 11 N -0.69 -24.72 6.50 -513.87 -3.34 -28.06 16 12 C 0.08 3.63 5.62 86.30 0.49 4.12 16 13 C 0.03 1.78 5.23 29.85 0.16 1.93 16 14 C -0.55 -32.19 9.11 25.60 0.23 -31.96 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 16 C 0.00 0.10 5.46 84.66 0.46 0.56 16 17 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 18 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 N -0.52 -14.69 7.89 -193.04 -1.52 -16.22 16 23 C 0.10 2.18 10.85 84.64 0.92 3.10 16 24 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.07 0.51 8.09 -2.39 -0.02 0.49 16 26 H 0.08 0.35 8.09 -2.39 -0.02 0.33 16 27 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 28 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 29 H 0.44 3.82 8.70 -92.71 -0.81 3.01 16 30 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.02 0.71 8.10 -2.38 -0.02 0.69 16 33 H 0.06 2.02 8.10 -2.39 -0.02 2.00 16 34 H 0.34 11.25 8.73 -89.69 -0.78 10.46 16 35 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -81.15 343.35 0.77 -80.38 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -0.55 Total: 11.59 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 5.57 Total: -5.48 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -6.24 Total: -114.69 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.04 Total: -19.04 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -81.15 0.77 -80.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515188211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.794 kcal (2) G-P(sol) polarization free energy of solvation -81.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds