Wall clock time and date at job start Mon Mar 30 2020 02:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30449 * 125.98489 * 2 1 4 4 N 1.39934 * 108.91164 * 180.17977 * 3 2 1 5 5 C 1.46505 * 125.75157 * 179.81122 * 4 3 2 6 6 C 1.53002 * 109.46686 * 264.69548 * 5 4 3 7 7 C 1.52993 * 109.47282 * 144.69477 * 5 4 3 8 8 C 1.34289 * 108.50060 * 359.54652 * 4 3 2 9 9 C 1.38117 * 107.40135 * 0.26502 * 8 4 3 10 10 C 1.47346 * 126.42091 * 180.02562 * 9 8 4 11 11 O 1.21630 * 120.00054 * 173.39001 * 10 9 8 12 12 N 1.34772 * 120.00455 * 353.38835 * 10 9 8 13 13 C 1.36983 * 119.99650 * 4.24540 * 12 10 9 14 14 H 1.08000 * 120.00104 * 300.04697 * 13 12 10 15 15 C 1.38974 * 119.99844 * 120.04720 * 13 12 10 16 16 N 1.31412 * 120.00322 * 1.70463 * 15 13 12 17 17 Si 1.86805 * 119.99977 * 181.70303 * 15 13 12 18 18 H 1.48490 * 109.47169 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47077 * 120.00241 * 17 15 13 20 20 H 1.48499 * 109.47030 * 239.99887 * 17 15 13 21 21 C 1.46496 * 120.00674 * 184.24856 * 12 10 9 22 22 C 1.52996 * 117.50443 * 182.79610 * 21 12 10 23 23 C 1.53000 * 117.50265 * 114.13350 * 21 12 10 24 24 H 1.09002 * 109.47323 * 270.31059 * 1 2 3 25 25 H 1.09004 * 109.47191 * 30.30607 * 1 2 3 26 26 H 1.08997 * 109.47177 * 150.30645 * 1 2 3 27 27 H 1.09002 * 109.46888 * 24.69145 * 5 4 3 28 28 H 1.09002 * 109.47128 * 299.99450 * 6 5 4 29 29 H 1.09002 * 109.46626 * 180.02562 * 6 5 4 30 30 H 1.08991 * 109.47410 * 60.00192 * 6 5 4 31 31 H 1.09004 * 109.47027 * 299.99701 * 7 5 4 32 32 H 1.09001 * 109.47236 * 59.99482 * 7 5 4 33 33 H 1.08993 * 109.47341 * 180.02562 * 7 5 4 34 34 H 1.08000 * 126.30209 * 180.24193 * 8 4 3 35 35 H 0.96998 * 120.00185 * 185.00831 * 16 15 13 36 36 H 1.09002 * 115.54913 * 328.47049 * 21 12 10 37 37 H 1.09006 * 117.49994 * 359.97438 * 22 21 12 38 38 H 1.09005 * 117.50229 * 145.01589 * 22 21 12 39 39 H 1.08998 * 117.50036 * 214.98172 * 23 21 12 40 40 H 1.09002 * 117.49898 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0556 0.0000 4 7 3.6111 0.6447 -0.0042 5 6 4.7784 1.5300 -0.0094 6 6 5.2603 1.7300 -1.4477 7 6 5.8990 0.9013 0.8211 8 6 3.6446 -0.6977 0.0034 9 6 2.3373 -1.1435 0.0062 10 6 1.8920 -2.5480 0.0147 11 8 0.7108 -2.8108 0.1376 12 7 2.7935 -3.5417 -0.1138 13 6 4.1310 -3.2505 -0.1648 14 1 4.5160 -2.6159 -0.9493 15 6 4.9927 -3.7717 0.7929 16 7 4.5299 -4.5709 1.7278 17 14 6.8088 -3.3364 0.7513 18 1 7.0737 -2.4268 -0.3922 19 1 7.1851 -2.6610 2.0192 20 1 7.6114 -4.5758 0.5935 21 6 2.3430 -4.9330 -0.1989 22 6 3.4170 -6.0198 -0.2778 23 6 2.5847 -5.6746 -1.5152 24 1 -0.3634 0.0056 1.0276 25 1 -0.3634 0.8873 -0.5186 26 1 -0.3633 -0.8927 -0.5090 27 1 4.5052 2.4941 0.4196 28 1 5.5335 0.7659 -1.8767 29 1 6.1290 2.3882 -1.4516 30 1 4.4620 2.1778 -2.0394 31 1 5.5557 0.7589 1.8458 32 1 6.1722 -0.0628 0.3921 33 1 6.7673 1.5601 0.8176 34 1 4.5306 -1.3152 0.0063 35 1 5.1154 -4.8766 2.4382 36 1 1.4305 -5.1662 0.3498 37 1 4.4589 -5.6996 -0.2668 38 1 3.2110 -6.9681 0.2188 39 1 1.8314 -6.3959 -1.8322 40 1 3.0785 -5.1271 -2.3180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000515666082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:39 Heat of formation + Delta-G solvation = 76.240203 kcal Electronic energy + Delta-G solvation = -22658.082402 eV Core-core repulsion = 19476.062834 eV Total energy + Delta-G solvation = -3182.019567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68756 -38.31292 -36.06346 -35.31804 -33.28545 -31.51818 -31.00712 -29.13207 -27.33042 -26.88798 -25.31266 -23.17503 -21.36959 -21.02632 -19.86813 -19.28983 -18.83077 -17.38562 -15.68581 -15.46147 -15.23016 -14.94965 -14.43928 -14.16789 -13.67146 -13.47092 -13.26523 -12.91905 -12.72992 -12.46149 -12.34466 -12.10492 -11.93533 -11.85308 -11.51616 -11.41307 -11.20362 -11.15953 -11.00809 -10.75762 -10.47846 -10.33286 -10.09746 -9.56162 -9.21390 -8.72813 -8.58098 -8.44931 -7.75627 -7.06283 -6.40974 -4.37049 2.48572 2.93107 2.95436 3.02644 3.05730 3.08420 3.92302 4.61376 4.64105 4.77792 4.85692 4.95922 5.10854 5.29577 5.33561 5.49040 5.54670 5.66562 5.73545 5.83173 6.04220 6.10632 6.11471 6.15470 6.22499 6.27125 6.28655 6.40463 6.56716 6.61564 6.66390 6.72984 6.96897 7.15113 7.24991 7.36482 7.46895 7.68358 8.14004 8.31311 8.40539 8.95015 9.57737 10.02087 10.58872 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.009262 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.935865 B = 3022.508211 C = 4532.810082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.114 3.886 3 N -0.328 5.328 4 N -0.376 5.376 5 C 0.158 3.842 6 C -0.165 4.165 7 C -0.170 4.170 8 C 0.107 3.893 9 C -0.260 4.260 10 C 0.571 3.429 11 O -0.600 6.600 12 N -0.421 5.421 13 C -0.350 4.350 14 H 0.083 0.917 15 C 0.058 3.942 16 N -0.838 5.838 17 Si 0.887 3.113 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.274 1.274 21 C 0.113 3.887 22 C -0.137 4.137 23 C -0.223 4.223 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.211 0.789 35 H 0.270 0.730 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 7.141 -2.988 8.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.053 4.053 3 N -0.150 5.150 4 N -0.157 5.157 5 C 0.056 3.944 6 C -0.223 4.223 7 C -0.228 4.228 8 C -0.041 4.041 9 C -0.274 4.274 10 C 0.362 3.638 11 O -0.486 6.486 12 N -0.140 5.140 13 C -0.479 4.479 14 H 0.100 0.900 15 C -0.151 4.151 16 N -0.470 5.470 17 Si 0.713 3.287 18 H -0.187 1.187 19 H -0.199 1.199 20 H -0.200 1.200 21 C 0.008 3.992 22 C -0.175 4.175 23 C -0.262 4.262 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.109 0.891 27 H 0.115 0.885 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.227 0.773 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.030 8.184 -2.773 9.535 hybrid contribution 1.256 -0.807 0.180 1.504 sum 5.286 7.376 -2.593 9.438 Atomic orbital electron populations 1.20174 0.86696 1.02891 1.02716 1.22356 0.96660 0.89615 0.96685 1.76874 0.86726 1.23196 1.28194 1.48668 1.04732 1.05282 1.57001 1.21121 0.82622 0.93537 0.97104 1.22242 1.01641 1.02954 0.95439 1.22254 0.97543 1.02254 1.00754 1.24923 1.01556 0.83153 0.94421 1.20207 0.91737 0.94478 1.21014 1.17517 0.85059 0.83874 0.77324 1.90562 1.17737 1.84661 1.55594 1.42445 1.05112 1.02094 1.64300 1.19176 0.82674 1.33748 1.12263 0.90017 1.25660 0.99337 0.94890 0.95240 1.69975 1.36474 1.28883 1.11697 0.86507 0.83995 0.79434 0.78809 1.18744 1.19950 1.19987 1.21132 0.98051 0.83039 0.96962 1.22899 0.99042 0.97623 0.97938 1.23375 1.04526 1.04831 0.93478 0.91048 0.92242 0.89060 0.88490 0.91663 0.90885 0.91775 0.91304 0.91193 0.90300 0.77294 0.91951 0.88075 0.87277 0.90959 0.90608 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 9.86 36.00 0.36 -0.85 16 2 C 0.11 2.44 7.26 -82.01 -0.60 1.84 16 3 N -0.33 -6.63 12.50 33.90 0.42 -6.20 16 4 N -0.38 -6.95 3.50 -54.29 -0.19 -7.14 16 5 C 0.16 2.17 3.91 -67.93 -0.27 1.90 16 6 C -0.16 -1.94 9.52 37.16 0.35 -1.58 16 7 C -0.17 -2.12 8.82 37.15 0.33 -1.79 16 8 C 0.11 2.22 8.93 -16.52 -0.15 2.08 16 9 C -0.26 -6.06 6.04 -105.06 -0.63 -6.69 16 10 C 0.57 14.73 7.63 -12.56 -0.10 14.64 16 11 O -0.60 -16.31 14.78 5.25 0.08 -16.23 16 12 N -0.42 -10.62 2.70 -108.96 -0.29 -10.92 16 13 C -0.35 -8.35 5.39 -14.98 -0.08 -8.43 16 14 H 0.08 1.89 6.17 -52.49 -0.32 1.56 16 15 C 0.06 1.36 3.84 -17.46 -0.07 1.29 16 16 N -0.84 -20.97 11.11 55.50 0.62 -20.35 16 17 Si 0.89 17.41 29.09 -169.99 -4.94 12.47 16 18 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C 0.11 2.72 5.61 -67.93 -0.38 2.34 16 22 C -0.14 -3.01 8.30 -26.70 -0.22 -3.23 16 23 C -0.22 -4.62 10.37 -26.69 -0.28 -4.90 16 24 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.09 1.79 6.71 -51.93 -0.35 1.44 16 27 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.95 7.13 -51.93 -0.37 0.58 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.21 4.31 3.39 -52.49 -0.18 4.13 16 35 H 0.27 6.41 8.32 -40.82 -0.34 6.08 16 36 H 0.10 2.52 7.76 -51.93 -0.40 2.12 16 37 H 0.11 2.56 5.47 -51.93 -0.28 2.28 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -29.06 324.97 -6.84 -35.89 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -5.69 Total: 10.96 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.73 Total: -3.38 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.56 Total: -44.61 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.08 Total: -16.23 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -4.94 Total: 12.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.06 -6.84 -35.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515666082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.132 kcal (2) G-P(sol) polarization free energy of solvation -29.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds