Wall clock time and date at job start Mon Mar 30 2020 02:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30449 * 125.98489 * 2 1 4 4 N 1.39934 * 108.91164 * 180.17977 * 3 2 1 5 5 C 1.46505 * 125.75157 * 179.81122 * 4 3 2 6 6 C 1.53002 * 109.46686 * 264.69548 * 5 4 3 7 7 C 1.52993 * 109.47282 * 144.69477 * 5 4 3 8 8 C 1.34289 * 108.50060 * 359.54652 * 4 3 2 9 9 C 1.38117 * 107.40135 * 0.26502 * 8 4 3 10 10 C 1.47346 * 126.42091 * 180.02562 * 9 8 4 11 11 O 1.21630 * 120.00054 * 173.39001 * 10 9 8 12 12 N 1.34772 * 120.00455 * 353.38835 * 10 9 8 13 13 C 1.36983 * 119.99650 * 4.24540 * 12 10 9 14 14 H 1.08000 * 120.00104 * 300.04697 * 13 12 10 15 15 C 1.38974 * 119.99844 * 120.04720 * 13 12 10 16 16 N 1.31412 * 120.00322 * 1.70463 * 15 13 12 17 17 Si 1.86805 * 119.99977 * 181.70303 * 15 13 12 18 18 H 1.48490 * 109.47169 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47077 * 120.00241 * 17 15 13 20 20 H 1.48499 * 109.47030 * 239.99887 * 17 15 13 21 21 C 1.46496 * 120.00674 * 184.24856 * 12 10 9 22 22 C 1.52996 * 117.50443 * 182.79610 * 21 12 10 23 23 C 1.53000 * 117.50265 * 114.13350 * 21 12 10 24 24 H 1.09002 * 109.47323 * 270.31059 * 1 2 3 25 25 H 1.09004 * 109.47191 * 30.30607 * 1 2 3 26 26 H 1.08997 * 109.47177 * 150.30645 * 1 2 3 27 27 H 1.09002 * 109.46888 * 24.69145 * 5 4 3 28 28 H 1.09002 * 109.47128 * 299.99450 * 6 5 4 29 29 H 1.09002 * 109.46626 * 180.02562 * 6 5 4 30 30 H 1.08991 * 109.47410 * 60.00192 * 6 5 4 31 31 H 1.09004 * 109.47027 * 299.99701 * 7 5 4 32 32 H 1.09001 * 109.47236 * 59.99482 * 7 5 4 33 33 H 1.08993 * 109.47341 * 180.02562 * 7 5 4 34 34 H 1.08000 * 126.30209 * 180.24193 * 8 4 3 35 35 H 0.96998 * 120.00185 * 185.00831 * 16 15 13 36 36 H 1.09002 * 115.54913 * 328.47049 * 21 12 10 37 37 H 1.09006 * 117.49994 * 359.97438 * 22 21 12 38 38 H 1.09005 * 117.50229 * 145.01589 * 22 21 12 39 39 H 1.08998 * 117.50036 * 214.98172 * 23 21 12 40 40 H 1.09002 * 117.49898 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0556 0.0000 4 7 3.6111 0.6447 -0.0042 5 6 4.7784 1.5300 -0.0094 6 6 5.2603 1.7300 -1.4477 7 6 5.8990 0.9013 0.8211 8 6 3.6446 -0.6977 0.0034 9 6 2.3373 -1.1435 0.0062 10 6 1.8920 -2.5480 0.0147 11 8 0.7108 -2.8108 0.1376 12 7 2.7935 -3.5417 -0.1138 13 6 4.1310 -3.2505 -0.1648 14 1 4.5160 -2.6159 -0.9493 15 6 4.9927 -3.7717 0.7929 16 7 4.5299 -4.5709 1.7278 17 14 6.8088 -3.3364 0.7513 18 1 7.0737 -2.4268 -0.3922 19 1 7.1851 -2.6610 2.0192 20 1 7.6114 -4.5758 0.5935 21 6 2.3430 -4.9330 -0.1989 22 6 3.4170 -6.0198 -0.2778 23 6 2.5847 -5.6746 -1.5152 24 1 -0.3634 0.0056 1.0276 25 1 -0.3634 0.8873 -0.5186 26 1 -0.3633 -0.8927 -0.5090 27 1 4.5052 2.4941 0.4196 28 1 5.5335 0.7659 -1.8767 29 1 6.1290 2.3882 -1.4516 30 1 4.4620 2.1778 -2.0394 31 1 5.5557 0.7589 1.8458 32 1 6.1722 -0.0628 0.3921 33 1 6.7673 1.5601 0.8176 34 1 4.5306 -1.3152 0.0063 35 1 5.1154 -4.8766 2.4382 36 1 1.4305 -5.1662 0.3498 37 1 4.4589 -5.6996 -0.2668 38 1 3.2110 -6.9681 0.2188 39 1 1.8314 -6.3959 -1.8322 40 1 3.0785 -5.1271 -2.3180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000515666082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:39 Heat of formation + Delta-G solvation = 59.801682 kcal Electronic energy + Delta-G solvation = -22658.795229 eV Core-core repulsion = 19476.062834 eV Total energy + Delta-G solvation = -3182.732395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.26561 -40.14750 -37.81612 -36.66189 -35.09659 -33.32619 -32.48370 -30.77713 -28.48218 -28.14084 -27.16650 -24.75396 -23.04480 -22.69242 -21.47245 -20.98498 -20.42311 -19.02561 -17.47845 -17.04770 -17.01337 -16.34770 -16.05359 -15.54220 -15.28016 -14.95040 -14.85672 -14.61693 -14.17700 -13.97511 -13.77282 -13.46846 -13.27256 -13.09071 -13.04713 -12.90865 -12.77036 -12.51044 -12.28364 -12.17876 -12.11931 -11.90074 -11.69863 -11.34929 -11.02503 -10.53050 -10.37065 -10.09476 -9.44945 -8.91541 -8.21306 -6.24181 0.86135 1.30697 1.43228 1.45961 1.55044 1.58396 2.26547 2.77532 2.99123 3.04411 3.48130 3.50356 3.91188 3.98393 4.08789 4.12101 4.29662 4.38759 4.46457 4.52755 4.62292 4.66914 4.74646 4.79476 4.81447 4.84673 4.91104 4.95645 5.08206 5.13674 5.17426 5.21994 5.24237 5.38147 5.41354 5.65559 5.76160 6.19311 6.29282 6.45908 6.79396 7.11059 7.67749 8.14095 8.79851 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014096 B = 0.009262 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.935865 B = 3022.508211 C = 4532.810082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.101 3.899 3 N -0.329 5.329 4 N -0.365 5.365 5 C 0.144 3.856 6 C -0.158 4.158 7 C -0.168 4.168 8 C 0.116 3.884 9 C -0.299 4.299 10 C 0.552 3.448 11 O -0.631 6.631 12 N -0.428 5.428 13 C -0.359 4.359 14 H 0.089 0.911 15 C 0.025 3.975 16 N -0.873 5.873 17 Si 0.948 3.052 18 H -0.239 1.239 19 H -0.272 1.272 20 H -0.278 1.278 21 C 0.076 3.924 22 C -0.126 4.126 23 C -0.194 4.194 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.055 0.945 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.119 0.881 34 H 0.214 0.786 35 H 0.270 0.730 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.678 8.671 -3.761 11.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 N -0.151 5.151 4 N -0.145 5.145 5 C 0.044 3.956 6 C -0.216 4.216 7 C -0.226 4.226 8 C -0.034 4.034 9 C -0.313 4.313 10 C 0.344 3.656 11 O -0.520 6.520 12 N -0.145 5.145 13 C -0.486 4.486 14 H 0.106 0.894 15 C -0.182 4.182 16 N -0.506 5.506 17 Si 0.770 3.230 18 H -0.162 1.162 19 H -0.197 1.197 20 H -0.204 1.204 21 C -0.029 4.029 22 C -0.164 4.164 23 C -0.233 4.233 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.131 0.869 28 H 0.074 0.926 29 H 0.129 0.871 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.229 0.771 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.355 9.742 -3.569 12.167 hybrid contribution 0.560 -1.254 0.433 1.440 sum 6.916 8.488 -3.135 11.389 Atomic orbital electron populations 1.20159 0.85324 1.03274 1.03168 1.22701 0.97879 0.89191 0.96858 1.76822 0.87518 1.22757 1.27989 1.49131 1.05370 1.05122 1.54865 1.21690 0.81373 0.93418 0.99079 1.22225 1.02725 1.03242 0.93432 1.22303 0.98324 1.02567 0.99444 1.24759 1.00635 0.84281 0.93749 1.20269 0.93457 0.93813 1.23779 1.18041 0.84974 0.85187 0.77349 1.90509 1.18812 1.85352 1.57283 1.42655 1.05702 1.02355 1.63791 1.19405 0.82237 1.34125 1.12854 0.89407 1.26349 1.03295 0.94197 0.94342 1.70106 1.38140 1.29934 1.12448 0.85569 0.78378 0.79402 0.79667 1.16152 1.19685 1.20393 1.21223 0.98356 0.83514 0.99768 1.22795 0.97735 0.97163 0.98661 1.23379 1.04067 1.03727 0.92135 0.90543 0.89441 0.90915 0.86880 0.92598 0.87055 0.92716 0.92550 0.92335 0.86280 0.77052 0.91988 0.90231 0.88683 0.89708 0.87873 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.24 9.86 71.23 0.70 -1.54 16 2 C 0.10 4.32 7.26 43.52 0.32 4.64 16 3 N -0.33 -12.97 12.50 -46.66 -0.58 -13.55 16 4 N -0.36 -12.97 3.50 -325.66 -1.14 -14.11 16 5 C 0.14 3.54 3.91 44.99 0.18 3.71 16 6 C -0.16 -3.19 9.52 71.98 0.69 -2.50 16 7 C -0.17 -3.64 8.82 71.98 0.64 -3.00 16 8 C 0.12 4.77 8.93 84.29 0.75 5.52 16 9 C -0.30 -14.18 6.04 -20.15 -0.12 -14.31 16 10 C 0.55 29.57 7.63 86.64 0.66 30.23 16 11 O -0.63 -36.02 14.78 -4.13 -0.06 -36.09 16 12 N -0.43 -22.13 2.70 -616.89 -1.67 -23.79 16 13 C -0.36 -17.15 5.39 84.07 0.45 -16.69 16 14 H 0.09 4.02 6.17 -2.91 -0.02 4.00 16 15 C 0.02 1.14 3.84 84.93 0.33 1.47 16 16 N -0.87 -44.17 11.11 21.67 0.24 -43.93 16 17 Si 0.95 34.61 29.09 68.60 2.00 36.60 16 18 H -0.24 -7.71 7.11 99.48 0.71 -7.00 16 19 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.28 -10.34 7.11 99.48 0.71 -9.63 16 21 C 0.08 3.76 5.61 44.99 0.25 4.02 16 22 C -0.13 -5.51 8.30 30.62 0.25 -5.26 16 23 C -0.19 -7.93 10.37 30.62 0.32 -7.61 16 24 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 25 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 26 H 0.07 2.95 6.71 -2.39 -0.02 2.94 16 27 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.06 1.41 7.13 -2.39 -0.02 1.39 16 33 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.21 8.56 3.39 -2.91 -0.01 8.55 16 35 H 0.27 12.97 8.32 -92.71 -0.77 12.20 16 36 H 0.08 4.18 7.76 -2.39 -0.02 4.16 16 37 H 0.09 4.46 5.47 -2.38 -0.01 4.44 16 38 H 0.08 3.44 8.14 -2.38 -0.02 3.42 16 39 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 40 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -64.55 324.97 5.24 -59.30 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 1.04 Total: 36.88 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.41 Total: -1.32 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -3.15 Total: -95.39 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.06 Total: -36.09 kcal Atomic # 14 Polarization: 34.61 SS G_CDS: 2.00 Total: 36.60 kcal Total: -64.55 5.24 -59.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000515666082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.105 kcal (2) G-P(sol) polarization free energy of solvation -64.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds