Wall clock time and date at job start Mon Mar 30 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00028 * 2 1 4 4 C 1.50710 * 109.46831 * 180.02562 * 3 2 1 5 5 N 1.30406 * 119.28689 * 180.02562 * 4 3 2 6 6 C 1.33780 * 122.02792 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.79613 * 180.02562 * 6 5 4 8 8 C 1.35645 * 120.41093 * 359.70783 * 6 5 4 9 9 C 1.41991 * 118.60089 * 0.53541 * 8 6 5 10 10 N 1.31472 * 120.91872 * 179.74263 * 9 8 6 11 11 C 1.46505 * 120.00016 * 352.34983 * 10 9 8 12 12 C 1.53007 * 109.46995 * 239.63051 * 11 10 9 13 13 C 1.50692 * 115.54886 * 275.77144 * 12 11 10 14 14 H 1.08009 * 119.99650 * 143.40123 * 13 12 11 15 15 C 1.37878 * 120.00563 * 323.39841 * 13 12 11 16 16 N 1.31518 * 119.99606 * 336.96001 * 15 13 12 17 17 Si 1.86800 * 120.00400 * 156.95295 * 15 13 12 18 18 H 1.48502 * 109.46696 * 60.00162 * 17 15 13 19 19 H 1.48494 * 109.47185 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46938 * 300.00425 * 17 15 13 21 21 C 1.52999 * 117.49584 * 130.06213 * 12 11 10 22 22 C 1.52995 * 60.00073 * 252.51169 * 21 12 11 23 23 N 1.35658 * 119.29253 * 359.97438 * 4 3 2 24 24 H 0.96998 * 120.31119 * 0.02562 * 23 4 3 25 25 H 1.09005 * 109.46798 * 59.99514 * 1 2 3 26 26 H 1.08996 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46974 * 299.99987 * 1 2 3 28 28 H 1.08997 * 109.47178 * 60.00239 * 3 2 1 29 29 H 1.08997 * 109.47328 * 299.99649 * 3 2 1 30 30 H 1.09000 * 109.47259 * 89.99663 * 7 6 5 31 31 H 1.09000 * 109.47248 * 210.00253 * 7 6 5 32 32 H 1.09005 * 109.46740 * 329.99798 * 7 6 5 33 33 H 1.08003 * 120.70514 * 180.28527 * 8 6 5 34 34 H 1.08994 * 109.47418 * 359.62904 * 11 10 9 35 35 H 1.09002 * 109.47197 * 119.63316 * 11 10 9 36 36 H 0.96994 * 119.99708 * 185.02607 * 16 15 13 37 37 H 1.08995 * 117.49985 * 0.02562 * 21 12 11 38 38 H 1.09004 * 117.49612 * 145.01965 * 21 12 11 39 39 H 1.09002 * 117.50098 * 252.51243 * 22 21 12 40 40 H 1.09002 * 117.51776 * 107.48125 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1864 -0.0006 5 7 4.2384 2.2698 -0.0002 6 6 5.5755 2.2280 -0.0002 7 6 6.3649 3.5117 0.0008 8 6 6.2252 1.0373 0.0053 9 6 5.4566 -0.1565 -0.0006 10 7 6.0391 -1.3351 -0.0007 11 6 7.4917 -1.4342 -0.1636 12 6 7.8098 -2.2659 -1.4079 13 6 7.8190 -3.7593 -1.2066 14 1 7.4500 -4.4113 -1.9846 15 6 8.2984 -4.2934 -0.0293 16 7 9.1390 -3.6042 0.7111 17 14 7.7538 -5.9955 0.5143 18 1 8.1422 -6.9919 -0.5160 19 1 8.4067 -6.3359 1.8038 20 1 6.2789 -6.0116 0.6873 21 6 8.8050 -1.6818 -2.4125 22 6 7.3152 -1.7378 -2.7560 23 7 4.0807 -0.0455 -0.0006 24 1 3.5254 -0.8407 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8464 -0.8900 30 1 6.5551 3.8204 1.0287 31 1 7.3133 3.3555 -0.5132 32 1 5.7970 4.2878 -0.5124 33 1 7.3046 0.9980 0.0099 34 1 7.9137 -0.4356 -0.2765 35 1 7.9239 -1.9142 0.7144 36 1 9.5327 -4.0072 1.5006 37 1 9.2335 -0.7054 -2.1868 38 1 9.4669 -2.3779 -2.9280 39 1 6.9968 -2.4706 -3.4974 40 1 6.7628 -0.7981 -2.7564 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516130706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:33 Heat of formation + Delta-G solvation = 29.829840 kcal Electronic energy + Delta-G solvation = -21437.469638 eV Core-core repulsion = 18253.437566 eV Total energy + Delta-G solvation = -3184.032072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.98770 -39.05662 -38.63568 -36.37540 -35.46782 -34.22924 -32.26099 -29.84416 -28.69891 -27.84182 -26.95488 -26.70669 -23.21649 -23.04946 -22.35045 -20.75791 -19.52521 -18.49435 -18.15056 -17.21994 -17.03202 -16.91576 -16.64757 -16.13473 -15.97181 -15.58798 -15.00122 -14.68636 -14.26268 -14.14903 -13.88736 -13.60777 -13.29334 -13.21431 -13.07158 -12.87353 -12.72694 -12.34842 -12.31912 -12.14720 -11.99233 -11.43058 -11.29762 -11.06181 -10.89884 -10.69388 -10.58654 -10.09599 -9.76024 -8.40321 -8.14560 -6.11328 -0.17597 0.98481 1.36483 1.42598 1.49671 1.71692 2.19923 2.40565 2.62368 2.96855 3.45521 3.57443 3.64894 3.92230 4.10908 4.17840 4.31001 4.32382 4.34296 4.52026 4.56679 4.60362 4.65030 4.72578 4.79405 4.83150 4.86971 4.92110 4.95814 5.07005 5.17979 5.33630 5.35246 5.48661 5.57424 5.72613 5.97084 6.03553 6.14862 6.42215 6.81546 6.93317 7.32814 7.43196 8.89295 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.005195 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.698628 B = 5388.408997 C = 6451.225033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.423 6.423 3 C 0.119 3.881 4 C 0.414 3.586 5 N -0.567 5.567 6 C 0.167 3.833 7 C -0.098 4.098 8 C -0.301 4.301 9 C 0.362 3.638 10 N -0.610 5.610 11 C 0.113 3.887 12 C 0.039 3.961 13 C -0.509 4.509 14 H 0.045 0.955 15 C 0.036 3.964 16 N -0.895 5.895 17 Si 0.946 3.054 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.196 4.196 22 C -0.186 4.186 23 N -0.601 5.601 24 H 0.426 0.574 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.019 0.981 35 H 0.083 0.917 36 H 0.264 0.736 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.448 15.114 0.368 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.342 6.342 3 C 0.041 3.959 4 C 0.147 3.853 5 N -0.294 5.294 6 C 0.049 3.951 7 C -0.155 4.155 8 C -0.328 4.328 9 C 0.092 3.908 10 N -0.336 5.336 11 C -0.017 4.017 12 C 0.038 3.962 13 C -0.545 4.545 14 H 0.064 0.936 15 C -0.165 4.165 16 N -0.533 5.533 17 Si 0.771 3.229 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.234 4.234 22 C -0.223 4.223 23 N -0.225 5.225 24 H 0.266 0.734 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.082 0.918 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.152 0.848 34 H 0.037 0.963 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.491 14.807 0.650 22.172 hybrid contribution 0.745 -1.451 0.190 1.642 sum -15.746 13.356 0.840 20.664 Atomic orbital electron populations 1.23013 0.77031 1.04347 1.02056 1.87734 1.23456 1.26987 1.96021 1.21461 0.81816 0.86329 1.06298 1.23529 0.96696 0.79672 0.85357 1.67698 1.06853 1.26516 1.28378 1.21095 0.89143 0.95950 0.88937 1.20781 0.98649 0.91833 1.04230 1.22203 1.01611 0.92197 1.16829 1.19263 0.84444 0.91922 0.95206 1.72258 1.13680 1.21818 1.25816 1.21419 0.84747 0.95438 1.00093 1.18981 0.97142 0.93617 0.86416 1.20582 1.42148 0.90461 1.01346 0.93638 1.25537 0.93674 1.01165 0.96082 1.70020 1.26770 1.38992 1.17476 0.85818 0.78734 0.80509 0.77826 1.19360 1.20468 1.20474 1.22993 0.91419 1.00822 1.08175 1.22614 0.96630 1.00850 1.02225 1.42667 1.05085 1.10516 1.64253 0.73390 0.91848 0.88731 0.91802 0.86233 0.86293 0.88849 0.90056 0.88905 0.84798 0.96266 0.89936 0.92712 0.90579 0.90910 0.90975 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.42 -7.27 9.37 -148.98 -1.40 -8.67 16 3 C 0.12 1.76 6.47 71.24 0.46 2.22 16 4 C 0.41 10.48 7.71 137.96 1.06 11.55 16 5 N -0.57 -15.09 10.18 -175.44 -1.79 -16.88 16 6 C 0.17 4.87 6.76 41.66 0.28 5.16 16 7 C -0.10 -2.00 10.17 71.24 0.72 -1.28 16 8 C -0.30 -11.00 8.88 22.60 0.20 -10.80 16 9 C 0.36 14.84 7.72 134.38 1.04 15.87 16 10 N -0.61 -30.39 10.58 -343.93 -3.64 -34.03 16 11 C 0.11 6.03 5.95 86.38 0.51 6.54 16 12 C 0.04 2.17 1.94 -52.93 -0.10 2.07 16 13 C -0.51 -30.44 8.96 25.60 0.23 -30.21 16 14 H 0.05 2.74 7.92 -2.91 -0.02 2.72 16 15 C 0.04 2.13 4.97 84.65 0.42 2.55 16 16 N -0.90 -53.40 11.30 21.45 0.24 -53.16 16 17 Si 0.95 46.20 29.60 68.60 2.03 48.23 16 18 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 21 C -0.20 -9.71 9.88 30.59 0.30 -9.40 16 22 C -0.19 -9.07 9.85 30.59 0.30 -8.77 16 23 N -0.60 -19.57 5.36 -183.31 -0.98 -20.55 16 24 H 0.43 13.54 7.58 -92.71 -0.70 12.83 16 25 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 32 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.13 5.12 5.86 -2.91 -0.02 5.10 16 34 H 0.02 0.97 5.01 -2.39 -0.01 0.96 16 35 H 0.08 4.97 5.50 -2.39 -0.01 4.96 16 36 H 0.26 14.88 8.32 -92.71 -0.77 14.11 16 37 H 0.08 3.48 8.06 -2.39 -0.02 3.46 16 38 H 0.07 3.63 8.14 -2.38 -0.02 3.61 16 39 H 0.07 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -73.81 335.73 1.50 -72.31 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.35 Total: 25.72 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 6.68 Total: -12.96 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -6.17 Total: -124.62 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -1.40 Total: -8.67 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -73.81 1.50 -72.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516130706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.136 kcal (2) G-P(sol) polarization free energy of solvation -73.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds