Wall clock time and date at job start Mon Mar 30 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39758 * 125.83379 * 2 1 4 4 C 1.36108 * 107.82615 * 180.02562 * 3 2 1 5 5 N 1.39480 * 126.21779 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99819 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99801 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47096 * 179.97438 * 8 6 5 10 10 C 1.53782 * 113.61096 * 274.13798 * 9 8 6 11 11 C 1.53953 * 87.01691 * 220.04580 * 10 9 8 12 12 C 1.53778 * 113.61770 * 176.52835 * 9 8 6 13 13 N 1.35265 * 107.56962 * 359.97438 * 4 3 2 14 14 C 1.46495 * 126.05131 * 179.73218 * 13 4 3 15 15 C 1.50704 * 109.46917 * 90.00227 * 14 13 4 16 16 H 1.07996 * 119.99789 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99975 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00217 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99911 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47156 * 59.99676 * 19 17 15 21 21 H 1.48498 * 109.47077 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47068 * 300.00026 * 19 17 15 23 23 N 1.30845 * 125.84224 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47266 * 90.00036 * 1 2 3 25 25 H 1.09005 * 109.47037 * 209.99685 * 1 2 3 26 26 H 1.09000 * 109.47039 * 329.99915 * 1 2 3 27 27 H 1.07998 * 126.09135 * 0.05460 * 3 2 1 28 28 H 0.97001 * 119.99909 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.46758 * 299.99577 * 8 6 5 30 30 H 1.08999 * 109.47133 * 60.00019 * 8 6 5 31 31 H 1.08997 * 112.84964 * 45.32717 * 9 8 6 32 32 H 1.08999 * 113.61800 * 334.56476 * 10 9 8 33 33 H 1.08996 * 113.61447 * 105.47079 * 10 9 8 34 34 H 1.09000 * 113.54147 * 270.81193 * 11 10 9 35 35 H 1.08997 * 113.67080 * 139.93142 * 11 10 9 36 36 H 1.09001 * 113.61539 * 254.53179 * 12 9 8 37 37 H 1.09008 * 113.61061 * 25.34710 * 12 9 8 38 38 H 1.09000 * 109.47596 * 210.00544 * 14 13 4 39 39 H 1.09004 * 109.47027 * 330.01061 * 14 13 4 40 40 H 0.97005 * 120.00533 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 -0.0006 5 7 4.7513 1.5277 -0.0013 6 6 4.6156 2.8686 -0.0009 7 8 3.5095 3.3663 -0.0004 8 6 5.8383 3.7496 -0.0011 9 6 5.4087 5.2181 -0.0012 10 6 5.1382 5.7805 -1.4067 11 6 5.8291 7.0728 -0.9349 12 6 6.5856 6.2042 0.0839 13 7 3.6093 -0.6403 -0.0004 14 6 4.7870 -1.5115 -0.0063 15 6 5.1982 -1.8101 1.4125 16 1 4.6379 -1.3929 2.2361 17 6 6.2896 -2.6157 1.6589 18 7 6.9715 -3.1240 0.6559 19 14 6.7988 -2.9864 3.4176 20 1 5.6834 -3.6675 4.1227 21 1 7.9927 -3.8693 3.4116 22 1 7.1245 -1.7172 4.1165 23 7 2.2732 -1.0607 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9901 2.1597 0.0008 28 1 5.6358 1.1296 -0.0013 29 1 6.4336 3.5449 0.8887 30 1 6.4331 3.5453 -0.8913 31 1 4.6122 5.4261 0.7131 32 1 5.6789 5.2598 -2.1970 33 1 4.0788 5.9072 -1.6298 34 1 5.1469 7.7889 -0.4767 35 1 6.4746 7.5241 -1.6884 36 1 6.6932 6.6723 1.0624 37 1 7.5232 5.7989 -0.2968 38 1 4.5474 -2.4431 -0.5189 39 1 5.6058 -1.0120 -0.5243 40 1 7.7396 -3.6906 0.8293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525191211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:42 Heat of formation + Delta-G solvation = 46.817073 kcal Electronic energy + Delta-G solvation = -21269.167179 eV Core-core repulsion = 18085.871729 eV Total energy + Delta-G solvation = -3183.295450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84791 -39.61482 -38.18231 -34.65987 -33.73430 -32.06663 -30.87097 -29.07287 -27.96613 -26.02551 -25.70725 -24.05223 -22.80996 -21.18446 -19.71628 -19.41207 -19.17168 -16.99105 -16.67517 -16.28650 -15.83643 -15.29168 -14.88867 -14.60045 -14.31507 -14.09913 -13.80534 -13.00744 -12.84090 -12.74617 -12.56203 -12.48724 -12.04668 -11.97008 -11.75687 -11.56486 -11.55383 -11.09020 -10.87787 -10.75378 -10.44770 -10.35525 -10.30777 -10.29885 -9.83032 -9.81473 -9.42331 -8.72286 -7.89348 -7.40321 -6.33676 -4.42250 2.32665 2.89097 3.15412 3.17728 3.22383 3.27379 3.64046 3.82840 4.24084 4.43351 4.51634 4.59482 4.74488 4.93317 4.99651 5.23938 5.35030 5.38986 5.51099 5.59552 5.61201 5.68955 5.75623 5.81229 5.97872 6.04048 6.14278 6.18544 6.22851 6.31631 6.40724 6.48090 6.70200 6.84730 7.05305 7.54596 7.59697 7.67543 7.79925 7.95427 8.37525 8.63166 8.72569 9.25324 10.73404 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.005115 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.545368 B = 5472.376038 C = 7088.973249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.297 4.297 4 C 0.302 3.698 5 N -0.643 5.643 6 C 0.518 3.482 7 O -0.515 6.515 8 C -0.128 4.128 9 C -0.093 4.093 10 C -0.135 4.135 11 C -0.143 4.143 12 C -0.138 4.138 13 N -0.346 5.346 14 C 0.257 3.743 15 C -0.541 4.541 16 H 0.064 0.936 17 C 0.067 3.933 18 N -0.890 5.890 19 Si 0.907 3.093 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.275 1.275 23 N -0.287 5.287 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.161 0.839 28 H 0.416 0.584 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 15.765 -2.894 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C -0.329 4.329 4 C 0.079 3.921 5 N -0.290 5.290 6 C 0.305 3.695 7 O -0.389 6.389 8 C -0.168 4.168 9 C -0.112 4.112 10 C -0.172 4.172 11 C -0.180 4.180 12 C -0.175 4.175 13 N -0.131 5.131 14 C 0.139 3.861 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.136 4.136 18 N -0.528 5.528 19 Si 0.733 3.267 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.200 1.200 23 N -0.113 5.113 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.178 0.822 28 H 0.252 0.748 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.998 14.672 -2.951 14.999 hybrid contribution 1.079 0.124 0.963 1.451 sum 0.081 14.796 -1.988 14.929 Atomic orbital electron populations 1.20013 0.87643 1.02399 1.01995 1.22030 0.96487 0.91097 1.01896 1.21264 0.89096 1.00390 1.22124 1.17991 0.88213 0.83333 1.02528 1.42921 1.08137 1.05827 1.72109 1.20720 0.91783 0.81143 0.75811 1.90616 1.27008 1.73714 1.47589 1.21696 0.95698 0.94520 1.04901 1.22340 0.98611 0.91276 0.98975 1.22979 1.01287 0.96493 0.96467 1.22821 0.99507 0.96698 0.98984 1.22980 0.97512 0.97348 0.99709 1.49338 1.06489 1.02246 1.55036 1.19603 0.77857 0.89751 0.98865 1.21309 1.13253 1.31989 0.91375 0.91780 1.24929 0.95703 0.94854 0.98152 1.69904 1.19243 1.32629 1.31027 0.86409 0.78106 0.78502 0.83653 1.19863 1.20888 1.19989 1.77340 0.86185 1.21847 1.25890 0.91413 0.91538 0.91176 0.82178 0.74783 0.88225 0.88477 0.88110 0.90344 0.91133 0.90301 0.91632 0.91443 0.90006 0.92595 0.93857 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.57 16 2 C 0.05 1.02 7.21 -82.44 -0.59 0.43 16 3 C -0.30 -6.21 9.58 -39.78 -0.38 -6.59 16 4 C 0.30 6.48 7.66 -153.15 -1.17 5.30 16 5 N -0.64 -11.29 5.42 -11.46 -0.06 -11.35 16 6 C 0.52 8.04 7.79 -10.99 -0.09 7.95 16 7 O -0.52 -9.29 12.92 5.55 0.07 -9.22 16 8 C -0.13 -1.39 5.52 -27.88 -0.15 -1.54 16 9 C -0.09 -0.96 3.11 -89.81 -0.28 -1.24 16 10 C -0.13 -1.34 7.65 -25.83 -0.20 -1.53 16 11 C -0.14 -1.18 8.09 -25.83 -0.21 -1.39 16 12 C -0.14 -1.14 7.65 -25.92 -0.20 -1.34 16 13 N -0.35 -8.23 3.60 -61.57 -0.22 -8.46 16 14 C 0.26 6.48 6.00 -5.19 -0.03 6.45 16 15 C -0.54 -14.60 9.39 -34.44 -0.32 -14.92 16 16 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -24.33 13.29 55.43 0.74 -23.60 16 19 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 N -0.29 -6.82 12.56 33.65 0.42 -6.40 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.16 3.26 5.83 -52.49 -0.31 2.95 16 28 H 0.42 6.71 7.97 -40.82 -0.33 6.39 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.88 7.87 -51.93 -0.41 0.47 16 31 H 0.10 1.19 7.73 -51.93 -0.40 0.79 16 32 H 0.08 0.74 7.92 -51.93 -0.41 0.32 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.61 8.10 -51.92 -0.42 0.19 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.04 1.05 7.51 -51.93 -0.39 0.66 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -31.13 336.52 -8.36 -39.49 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.01 Total: 6.09 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -3.35 Total: -7.30 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.88 Total: -49.80 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.13 -8.36 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525191211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.311 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds