Wall clock time and date at job start Mon Mar 30 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39758 * 125.83379 * 2 1 4 4 C 1.36108 * 107.82615 * 180.02562 * 3 2 1 5 5 N 1.39480 * 126.21779 * 179.97438 * 4 3 2 6 6 C 1.34776 * 119.99819 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00077 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99801 * 179.97438 * 6 5 4 9 9 C 1.53003 * 109.47096 * 179.97438 * 8 6 5 10 10 C 1.53782 * 113.61096 * 274.13798 * 9 8 6 11 11 C 1.53953 * 87.01691 * 220.04580 * 10 9 8 12 12 C 1.53778 * 113.61770 * 176.52835 * 9 8 6 13 13 N 1.35265 * 107.56962 * 359.97438 * 4 3 2 14 14 C 1.46495 * 126.05131 * 179.73218 * 13 4 3 15 15 C 1.50704 * 109.46917 * 90.00227 * 14 13 4 16 16 H 1.07996 * 119.99789 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99975 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00217 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99911 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47156 * 59.99676 * 19 17 15 21 21 H 1.48498 * 109.47077 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47068 * 300.00026 * 19 17 15 23 23 N 1.30845 * 125.84224 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47266 * 90.00036 * 1 2 3 25 25 H 1.09005 * 109.47037 * 209.99685 * 1 2 3 26 26 H 1.09000 * 109.47039 * 329.99915 * 1 2 3 27 27 H 1.07998 * 126.09135 * 0.05460 * 3 2 1 28 28 H 0.97001 * 119.99909 * 179.97438 * 5 4 3 29 29 H 1.08999 * 109.46758 * 299.99577 * 8 6 5 30 30 H 1.08999 * 109.47133 * 60.00019 * 8 6 5 31 31 H 1.08997 * 112.84964 * 45.32717 * 9 8 6 32 32 H 1.08999 * 113.61800 * 334.56476 * 10 9 8 33 33 H 1.08996 * 113.61447 * 105.47079 * 10 9 8 34 34 H 1.09000 * 113.54147 * 270.81193 * 11 10 9 35 35 H 1.08997 * 113.67080 * 139.93142 * 11 10 9 36 36 H 1.09001 * 113.61539 * 254.53179 * 12 9 8 37 37 H 1.09008 * 113.61061 * 25.34710 * 12 9 8 38 38 H 1.09000 * 109.47596 * 210.00544 * 14 13 4 39 39 H 1.09004 * 109.47027 * 330.01061 * 14 13 4 40 40 H 0.97005 * 120.00533 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 -0.0006 5 7 4.7513 1.5277 -0.0013 6 6 4.6156 2.8686 -0.0009 7 8 3.5095 3.3663 -0.0004 8 6 5.8383 3.7496 -0.0011 9 6 5.4087 5.2181 -0.0012 10 6 5.1382 5.7805 -1.4067 11 6 5.8291 7.0728 -0.9349 12 6 6.5856 6.2042 0.0839 13 7 3.6093 -0.6403 -0.0004 14 6 4.7870 -1.5115 -0.0063 15 6 5.1982 -1.8101 1.4125 16 1 4.6379 -1.3929 2.2361 17 6 6.2896 -2.6157 1.6589 18 7 6.9715 -3.1240 0.6559 19 14 6.7988 -2.9864 3.4176 20 1 5.6834 -3.6675 4.1227 21 1 7.9927 -3.8693 3.4116 22 1 7.1245 -1.7172 4.1165 23 7 2.2732 -1.0607 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9901 2.1597 0.0008 28 1 5.6358 1.1296 -0.0013 29 1 6.4336 3.5449 0.8887 30 1 6.4331 3.5453 -0.8913 31 1 4.6122 5.4261 0.7131 32 1 5.6789 5.2598 -2.1970 33 1 4.0788 5.9072 -1.6298 34 1 5.1469 7.7889 -0.4767 35 1 6.4746 7.5241 -1.6884 36 1 6.6932 6.6723 1.0624 37 1 7.5232 5.7989 -0.2968 38 1 4.5474 -2.4431 -0.5189 39 1 5.6058 -1.0120 -0.5243 40 1 7.7396 -3.6906 0.8293 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525191211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:42 Heat of formation + Delta-G solvation = 28.889663 kcal Electronic energy + Delta-G solvation = -21269.944570 eV Core-core repulsion = 18085.871729 eV Total energy + Delta-G solvation = -3184.072841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.41587 -40.83086 -39.15207 -36.23379 -35.56332 -33.83698 -31.94432 -30.67247 -29.49826 -27.81681 -26.41171 -25.14936 -24.57323 -22.49210 -21.23622 -20.64221 -20.19351 -18.89361 -18.37386 -17.65831 -16.90326 -16.74051 -16.31243 -16.03787 -15.63655 -15.35550 -15.09058 -14.52039 -14.42495 -14.05691 -13.97399 -13.53816 -13.38737 -13.24166 -13.12876 -12.91499 -12.76971 -12.70838 -12.33929 -12.29171 -11.91630 -11.69154 -11.55701 -11.38686 -11.13965 -11.04311 -10.79890 -10.76868 -9.63494 -9.05524 -8.37019 -6.54836 0.82649 1.35784 1.37977 1.40507 1.48802 1.67009 2.07746 2.22747 2.36312 2.93386 3.48123 3.77204 3.81868 3.83219 3.97126 4.06882 4.24762 4.48993 4.54161 4.62491 4.70126 4.73321 4.83002 4.88443 4.90965 4.92956 4.95487 4.97019 5.06762 5.15521 5.21175 5.21957 5.24363 5.42920 5.49984 5.68004 5.76080 5.96230 6.17900 6.32100 6.56609 6.99964 7.06770 7.17536 8.69297 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.005115 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.545368 B = 5472.376038 C = 7088.973249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.057 3.943 3 C -0.310 4.310 4 C 0.299 3.701 5 N -0.643 5.643 6 C 0.516 3.484 7 O -0.541 6.541 8 C -0.118 4.118 9 C -0.100 4.100 10 C -0.141 4.141 11 C -0.137 4.137 12 C -0.127 4.127 13 N -0.368 5.368 14 C 0.273 3.727 15 C -0.558 4.558 16 H 0.046 0.954 17 C 0.029 3.971 18 N -0.913 5.913 19 Si 0.969 3.031 20 H -0.279 1.279 21 H -0.271 1.271 22 H -0.264 1.264 23 N -0.334 5.334 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.167 0.833 28 H 0.421 0.579 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.026 0.974 39 H 0.049 0.951 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 17.159 -2.300 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.342 4.342 4 C 0.076 3.924 5 N -0.291 5.291 6 C 0.306 3.694 7 O -0.416 6.416 8 C -0.158 4.158 9 C -0.119 4.119 10 C -0.179 4.179 11 C -0.175 4.175 12 C -0.164 4.164 13 N -0.154 5.154 14 C 0.154 3.846 15 C -0.596 4.596 16 H 0.065 0.935 17 C -0.173 4.173 18 N -0.551 5.551 19 Si 0.793 3.207 20 H -0.205 1.205 21 H -0.196 1.196 22 H -0.189 1.189 23 N -0.159 5.159 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.111 0.889 27 H 0.184 0.816 28 H 0.259 0.741 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.008 16.093 -2.366 16.266 hybrid contribution 0.697 -0.244 0.728 1.037 sum 0.690 15.850 -1.638 15.949 Atomic orbital electron populations 1.20219 0.83943 1.03846 1.03855 1.22894 0.98740 0.90108 0.99035 1.21469 0.89143 1.00728 1.22862 1.18423 0.89864 0.82850 1.01216 1.43188 1.07356 1.06267 1.72302 1.21718 0.93041 0.80462 0.74181 1.90592 1.28624 1.73870 1.48554 1.21819 0.93602 0.93440 1.06936 1.22357 0.99380 0.91354 0.98816 1.23035 1.00490 0.97857 0.96480 1.22808 0.99437 0.96031 0.99207 1.22958 0.97084 0.96196 1.00162 1.49165 1.06271 1.02951 1.56988 1.19216 0.78627 0.88950 0.97822 1.21372 1.13738 1.32865 0.91596 0.93544 1.25671 0.95347 0.94214 1.02045 1.69978 1.19525 1.32744 1.32868 0.85446 0.77745 0.78724 0.78814 1.20467 1.19578 1.18890 1.77288 0.86515 1.23664 1.28427 0.89219 0.90897 0.88876 0.81587 0.74128 0.86290 0.86020 0.90052 0.89637 0.93009 0.90279 0.90325 0.90771 0.88509 0.95618 0.93348 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.44 71.24 0.74 -1.00 16 2 C 0.06 2.36 7.21 43.07 0.31 2.67 16 3 C -0.31 -13.03 9.58 22.14 0.21 -12.82 16 4 C 0.30 13.02 7.66 131.31 1.01 14.03 16 5 N -0.64 -22.51 5.42 -308.56 -1.67 -24.18 16 6 C 0.52 15.66 7.79 87.66 0.68 16.34 16 7 O -0.54 -19.44 12.92 -3.07 -0.04 -19.48 16 8 C -0.12 -2.32 5.52 29.85 0.16 -2.15 16 9 C -0.10 -1.91 3.11 -10.27 -0.03 -1.94 16 10 C -0.14 -2.61 7.65 31.18 0.24 -2.37 16 11 C -0.14 -1.97 8.09 31.18 0.25 -1.72 16 12 C -0.13 -1.74 7.65 31.12 0.24 -1.50 16 13 N -0.37 -18.05 3.60 -348.71 -1.26 -19.30 16 14 C 0.27 14.20 6.00 85.64 0.51 14.72 16 15 C -0.56 -30.68 9.39 25.60 0.24 -30.44 16 16 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 17 C 0.03 1.55 5.46 84.66 0.46 2.01 16 18 N -0.91 -49.94 13.29 21.45 0.28 -49.65 16 19 Si 0.97 41.99 29.54 68.60 2.03 44.01 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 N -0.33 -16.23 12.56 -47.45 -0.60 -16.82 16 24 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 26 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.17 6.74 5.83 -2.91 -0.02 6.73 16 28 H 0.42 13.51 7.97 -92.71 -0.74 12.77 16 29 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.12 1.84 7.87 -2.39 -0.02 1.82 16 31 H 0.08 1.88 7.73 -2.39 -0.02 1.86 16 32 H 0.09 1.44 7.92 -2.39 -0.02 1.42 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.10 1.08 8.10 -2.38 -0.02 1.06 16 38 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 2.42 7.51 -2.38 -0.02 2.40 16 40 H 0.27 14.06 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -68.10 336.52 4.08 -64.01 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.30 Total: 25.58 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 5.03 Total: -4.17 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -3.24 Total: -109.96 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.04 Total: -19.48 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -68.10 4.08 -64.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525191211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.905 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds