Wall clock time and date at job start Mon Mar 30 2020 02:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39762 * 125.84098 * 2 1 4 4 C 1.36106 * 107.82715 * 180.12546 * 3 2 1 5 5 N 1.39475 * 126.21402 * 179.90618 * 4 3 2 6 6 C 1.34786 * 119.99947 * 359.40627 * 5 4 3 7 7 O 1.21286 * 119.99651 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99869 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.46953 * 300.00282 * 8 6 5 10 10 C 1.52991 * 109.47124 * 60.00331 * 8 6 5 11 11 C 1.53002 * 109.46779 * 180.02562 * 8 6 5 12 12 C 1.52998 * 117.49894 * 128.62680 * 11 8 6 13 13 C 1.52997 * 117.50357 * 60.00089 * 11 8 6 14 14 N 1.35254 * 107.56910 * 359.63743 * 4 3 2 15 15 C 1.46501 * 126.04479 * 180.19095 * 14 4 3 16 16 C 1.50706 * 109.46740 * 90.00563 * 15 14 4 17 17 H 1.07997 * 120.00333 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99387 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00228 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99520 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46951 * 90.00229 * 20 18 16 22 22 H 1.48499 * 109.46854 * 210.00349 * 20 18 16 23 23 H 1.48497 * 109.47058 * 329.99960 * 20 18 16 24 24 N 1.30851 * 125.83804 * 179.71778 * 2 1 3 25 25 H 1.09001 * 109.47655 * 270.26026 * 1 2 3 26 26 H 1.09005 * 109.46993 * 30.25920 * 1 2 3 27 27 H 1.08998 * 109.47545 * 150.25609 * 1 2 3 28 28 H 1.07996 * 126.08219 * 0.03068 * 3 2 1 29 29 H 0.96996 * 120.00298 * 179.68639 * 5 4 3 30 30 H 1.08999 * 109.47592 * 59.99802 * 10 8 6 31 31 H 1.09002 * 109.47025 * 179.97438 * 10 8 6 32 32 H 1.09001 * 109.47264 * 299.99692 * 10 8 6 33 33 H 1.08997 * 115.54626 * 274.32576 * 11 8 6 34 34 H 1.09003 * 117.49821 * 359.97438 * 12 11 8 35 35 H 1.09002 * 117.50372 * 145.02054 * 12 11 8 36 36 H 1.08992 * 117.49697 * 214.98208 * 13 11 8 37 37 H 1.09005 * 117.49335 * 359.97438 * 13 11 8 38 38 H 1.09005 * 109.47343 * 210.00038 * 15 14 4 39 39 H 1.08996 * 109.47725 * 330.00546 * 15 14 4 40 40 H 0.97002 * 119.99597 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0028 5 7 4.7512 1.5274 -0.0056 6 6 4.6157 2.8684 -0.0178 7 8 3.5096 3.3660 -0.0258 8 6 5.8384 3.7493 -0.0214 9 1 6.4306 3.5525 0.8723 10 6 6.6778 3.4514 -1.2653 11 6 5.4089 5.2177 -0.0350 12 6 6.0204 6.1424 1.0194 13 6 4.5557 5.7151 1.1335 14 7 3.6091 -0.6404 0.0036 15 6 4.7870 -1.5116 0.0073 16 6 5.1913 -1.8036 1.4294 17 1 4.6276 -1.3821 2.2485 18 6 6.2809 -2.6090 1.6847 19 7 6.9677 -3.1219 0.6873 20 14 6.7825 -2.9704 3.4475 21 1 6.0823 -4.1914 3.9209 22 1 8.2505 -3.1858 3.5101 23 1 6.4135 -1.8213 4.3126 24 7 2.2731 -1.0608 0.0052 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3634 -0.8922 -0.5098 28 1 1.9902 2.1596 0.0005 29 1 5.6358 1.1294 -0.0030 30 1 6.0857 3.6481 -2.1590 31 1 7.5620 4.0889 -1.2681 32 1 6.9838 2.4053 -1.2552 33 1 5.2087 5.6398 -1.0198 34 1 6.7284 5.7045 1.7231 35 1 6.2227 7.1732 0.7285 36 1 3.7945 6.4647 0.9175 37 1 4.3000 4.9961 1.9118 38 1 4.5497 -2.4457 -0.5020 39 1 5.6082 -1.0147 -0.5091 40 1 7.7344 -3.6882 0.8670 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531348743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:20 Heat of formation + Delta-G solvation = 54.578987 kcal Electronic energy + Delta-G solvation = -21608.107983 eV Core-core repulsion = 18425.149115 eV Total energy + Delta-G solvation = -3182.958868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88827 -39.55133 -37.10001 -34.69145 -33.76317 -32.51495 -31.93422 -29.11945 -28.10707 -26.02514 -24.89020 -22.99469 -22.38862 -22.16576 -20.32580 -19.61972 -18.97364 -17.00310 -16.73356 -16.27687 -15.73765 -15.09424 -14.90120 -14.53784 -14.40659 -13.94540 -13.80441 -12.91406 -12.76643 -12.70422 -12.48304 -12.44050 -12.05237 -11.84677 -11.75641 -11.57301 -11.55655 -11.16276 -11.06422 -10.89786 -10.45660 -10.35890 -10.28626 -10.12673 -9.81456 -9.75393 -9.33684 -8.72855 -7.89057 -7.39923 -6.34128 -4.42490 2.32715 2.84877 3.14798 3.16002 3.22967 3.27532 3.63561 3.69915 3.96512 4.23997 4.43706 4.67430 4.78130 4.99247 4.99819 5.12480 5.17450 5.38427 5.39289 5.57597 5.62972 5.66297 5.79942 5.90872 5.97053 6.05080 6.08625 6.17803 6.19042 6.23997 6.31925 6.47615 6.70409 6.84715 7.05257 7.54737 7.59605 7.67518 7.79646 7.95767 8.38023 8.63200 8.72711 9.25093 10.72985 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012575 B = 0.005970 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.018048 B = 4689.040763 C = 6147.053985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.297 4.297 4 C 0.303 3.697 5 N -0.641 5.641 6 C 0.521 3.479 7 O -0.507 6.507 8 C -0.076 4.076 9 H 0.101 0.899 10 C -0.144 4.144 11 C -0.134 4.134 12 C -0.184 4.184 13 C -0.156 4.156 14 N -0.346 5.346 15 C 0.257 3.743 16 C -0.540 4.540 17 H 0.064 0.936 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.906 3.094 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.287 5.287 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.161 0.839 29 H 0.415 0.585 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 14.753 -2.270 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C -0.329 4.329 4 C 0.080 3.920 5 N -0.288 5.288 6 C 0.308 3.692 7 O -0.380 6.380 8 C -0.097 4.097 9 H 0.119 0.881 10 C -0.202 4.202 11 C -0.152 4.152 12 C -0.221 4.221 13 C -0.193 4.193 14 N -0.131 5.131 15 C 0.139 3.861 16 C -0.578 4.578 17 H 0.083 0.917 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.197 1.197 24 N -0.112 5.112 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.178 0.822 29 H 0.251 0.749 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.088 13.666 -2.323 13.905 hybrid contribution 1.048 0.168 0.975 1.441 sum -0.041 13.834 -1.348 13.900 Atomic orbital electron populations 1.20010 0.87651 1.02276 1.02101 1.22030 0.96482 0.91108 1.01900 1.21260 0.89087 1.00391 1.22134 1.17975 0.88171 0.83325 1.02513 1.42885 1.08104 1.05750 1.72112 1.20622 0.91524 0.81112 0.75991 1.90620 1.26722 1.73633 1.47061 1.20871 0.94261 0.92963 1.01632 0.88057 1.21782 0.99726 1.02530 0.96124 1.21913 1.05281 0.92307 0.95730 1.23096 0.97207 0.99634 1.02123 1.22801 0.93012 1.03039 1.00460 1.49332 1.06489 1.02236 1.55044 1.19606 0.77866 0.89764 0.98866 1.21346 1.13276 1.31849 0.91358 0.91745 1.24933 0.95687 0.94878 0.98171 1.69917 1.19197 1.32547 1.31115 0.86361 0.77629 0.79096 0.83664 1.20180 1.20830 1.19709 1.77342 0.86171 1.21832 1.25890 0.91363 0.91192 0.91594 0.82173 0.74858 0.91826 0.90995 0.91638 0.87410 0.88836 0.88826 0.88821 0.88817 0.92592 0.93867 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.00 0.38 -0.56 16 2 C 0.05 1.02 7.21 -82.44 -0.59 0.42 16 3 C -0.30 -6.20 9.58 -39.78 -0.38 -6.58 16 4 C 0.30 6.49 7.66 -153.16 -1.17 5.31 16 5 N -0.64 -11.34 5.31 -11.46 -0.06 -11.40 16 6 C 0.52 8.22 6.99 -10.98 -0.08 8.14 16 7 O -0.51 -9.16 12.21 5.55 0.07 -9.09 16 8 C -0.08 -0.87 2.88 -91.78 -0.26 -1.14 16 9 H 0.10 1.07 7.90 -51.93 -0.41 0.66 16 10 C -0.14 -1.41 9.07 37.15 0.34 -1.08 16 11 C -0.13 -1.45 4.73 -90.62 -0.43 -1.88 16 12 C -0.18 -1.69 10.18 -26.73 -0.27 -1.96 16 13 C -0.16 -1.76 8.97 -26.73 -0.24 -2.00 16 14 N -0.35 -8.21 3.60 -61.57 -0.22 -8.43 16 15 C 0.26 6.46 6.01 -5.19 -0.03 6.43 16 16 C -0.54 -14.57 9.39 -34.44 -0.32 -14.89 16 17 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -24.30 13.29 55.43 0.74 -23.56 16 20 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 N -0.29 -6.80 12.56 33.65 0.42 -6.37 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.16 3.25 5.83 -52.49 -0.31 2.95 16 29 H 0.41 6.82 7.38 -40.82 -0.30 6.52 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.65 7.56 -51.93 -0.39 0.26 16 33 H 0.11 1.12 8.11 -51.93 -0.42 0.70 16 34 H 0.09 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -30.89 338.08 -8.14 -39.03 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.99 Total: 7.16 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.17 Total: -8.09 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.88 Total: -49.77 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.07 Total: -9.09 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.89 -8.14 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531348743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.607 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds