Wall clock time and date at job start Mon Mar 30 2020 02:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39762 * 125.84098 * 2 1 4 4 C 1.36106 * 107.82715 * 180.12546 * 3 2 1 5 5 N 1.39475 * 126.21402 * 179.90618 * 4 3 2 6 6 C 1.34786 * 119.99947 * 359.40627 * 5 4 3 7 7 O 1.21286 * 119.99651 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99869 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.46953 * 300.00282 * 8 6 5 10 10 C 1.52991 * 109.47124 * 60.00331 * 8 6 5 11 11 C 1.53002 * 109.46779 * 180.02562 * 8 6 5 12 12 C 1.52998 * 117.49894 * 128.62680 * 11 8 6 13 13 C 1.52997 * 117.50357 * 60.00089 * 11 8 6 14 14 N 1.35254 * 107.56910 * 359.63743 * 4 3 2 15 15 C 1.46501 * 126.04479 * 180.19095 * 14 4 3 16 16 C 1.50706 * 109.46740 * 90.00563 * 15 14 4 17 17 H 1.07997 * 120.00333 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99387 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00228 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99520 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46951 * 90.00229 * 20 18 16 22 22 H 1.48499 * 109.46854 * 210.00349 * 20 18 16 23 23 H 1.48497 * 109.47058 * 329.99960 * 20 18 16 24 24 N 1.30851 * 125.83804 * 179.71778 * 2 1 3 25 25 H 1.09001 * 109.47655 * 270.26026 * 1 2 3 26 26 H 1.09005 * 109.46993 * 30.25920 * 1 2 3 27 27 H 1.08998 * 109.47545 * 150.25609 * 1 2 3 28 28 H 1.07996 * 126.08219 * 0.03068 * 3 2 1 29 29 H 0.96996 * 120.00298 * 179.68639 * 5 4 3 30 30 H 1.08999 * 109.47592 * 59.99802 * 10 8 6 31 31 H 1.09002 * 109.47025 * 179.97438 * 10 8 6 32 32 H 1.09001 * 109.47264 * 299.99692 * 10 8 6 33 33 H 1.08997 * 115.54626 * 274.32576 * 11 8 6 34 34 H 1.09003 * 117.49821 * 359.97438 * 12 11 8 35 35 H 1.09002 * 117.50372 * 145.02054 * 12 11 8 36 36 H 1.08992 * 117.49697 * 214.98208 * 13 11 8 37 37 H 1.09005 * 117.49335 * 359.97438 * 13 11 8 38 38 H 1.09005 * 109.47343 * 210.00038 * 15 14 4 39 39 H 1.08996 * 109.47725 * 330.00546 * 15 14 4 40 40 H 0.97002 * 119.99597 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7121 -0.0028 5 7 4.7512 1.5274 -0.0056 6 6 4.6157 2.8684 -0.0178 7 8 3.5096 3.3660 -0.0258 8 6 5.8384 3.7493 -0.0214 9 1 6.4306 3.5525 0.8723 10 6 6.6778 3.4514 -1.2653 11 6 5.4089 5.2177 -0.0350 12 6 6.0204 6.1424 1.0194 13 6 4.5557 5.7151 1.1335 14 7 3.6091 -0.6404 0.0036 15 6 4.7870 -1.5116 0.0073 16 6 5.1913 -1.8036 1.4294 17 1 4.6276 -1.3821 2.2485 18 6 6.2809 -2.6090 1.6847 19 7 6.9677 -3.1219 0.6873 20 14 6.7825 -2.9704 3.4475 21 1 6.0823 -4.1914 3.9209 22 1 8.2505 -3.1858 3.5101 23 1 6.4135 -1.8213 4.3126 24 7 2.2731 -1.0608 0.0052 25 1 -0.3634 0.0047 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3634 -0.8922 -0.5098 28 1 1.9902 2.1596 0.0005 29 1 5.6358 1.1294 -0.0030 30 1 6.0857 3.6481 -2.1590 31 1 7.5620 4.0889 -1.2681 32 1 6.9838 2.4053 -1.2552 33 1 5.2087 5.6398 -1.0198 34 1 6.7284 5.7045 1.7231 35 1 6.2227 7.1732 0.7285 36 1 3.7945 6.4647 0.9175 37 1 4.3000 4.9961 1.9118 38 1 4.5497 -2.4457 -0.5020 39 1 5.6082 -1.0147 -0.5091 40 1 7.7344 -3.6882 0.8670 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531348743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:20 Heat of formation + Delta-G solvation = 37.011102 kcal Electronic energy + Delta-G solvation = -21608.869783 eV Core-core repulsion = 18425.149115 eV Total energy + Delta-G solvation = -3183.720669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.44924 -40.89030 -38.08155 -36.25008 -35.59068 -33.91841 -33.28901 -30.74875 -29.70988 -27.81952 -25.86909 -24.79473 -23.53101 -23.12323 -21.59675 -21.14353 -20.30715 -18.89596 -18.40384 -17.69106 -16.94344 -16.55240 -16.41454 -15.90688 -15.66993 -15.33380 -15.13880 -14.56018 -14.43902 -14.04638 -13.70482 -13.51064 -13.39186 -13.26088 -13.12166 -12.93275 -12.73504 -12.72134 -12.34101 -12.30835 -12.03114 -11.88794 -11.68041 -11.48921 -11.21042 -10.95270 -10.77885 -10.64491 -9.63582 -9.05575 -8.37787 -6.55371 0.81738 1.34585 1.35558 1.38740 1.48465 1.65746 2.07042 2.19031 2.34192 2.92519 2.96100 3.54273 3.66478 3.83239 3.90069 4.17321 4.20168 4.30331 4.35282 4.55313 4.61972 4.71651 4.81995 4.85851 4.87120 4.88276 4.91684 4.93415 4.99308 5.10035 5.20337 5.21372 5.24355 5.31371 5.35947 5.49587 5.75452 5.96240 6.16796 6.30703 6.56200 6.99444 7.05164 7.16897 8.68757 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012575 B = 0.005970 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.018048 B = 4689.040763 C = 6147.053985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.057 3.943 3 C -0.309 4.309 4 C 0.300 3.700 5 N -0.641 5.641 6 C 0.519 3.481 7 O -0.530 6.530 8 C -0.067 4.067 9 H 0.115 0.885 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.157 4.157 13 C -0.176 4.176 14 N -0.368 5.368 15 C 0.273 3.727 16 C -0.556 4.556 17 H 0.046 0.954 18 C 0.029 3.971 19 N -0.913 5.913 20 Si 0.969 3.031 21 H -0.276 1.276 22 H -0.267 1.267 23 H -0.272 1.272 24 N -0.333 5.333 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.167 0.833 29 H 0.419 0.581 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.026 0.974 39 H 0.048 0.952 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.179 16.297 -1.674 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.108 4.108 3 C -0.341 4.341 4 C 0.077 3.923 5 N -0.289 5.289 6 C 0.307 3.693 7 O -0.404 6.404 8 C -0.088 4.088 9 H 0.133 0.867 10 C -0.198 4.198 11 C -0.161 4.161 12 C -0.193 4.193 13 C -0.213 4.213 14 N -0.153 5.153 15 C 0.154 3.846 16 C -0.594 4.594 17 H 0.064 0.936 18 C -0.173 4.173 19 N -0.551 5.551 20 Si 0.793 3.207 21 H -0.202 1.202 22 H -0.192 1.192 23 H -0.196 1.196 24 N -0.158 5.158 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.094 0.906 28 H 0.185 0.815 29 H 0.257 0.743 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.239 15.231 -1.739 15.332 hybrid contribution 0.719 -0.242 0.758 1.072 sum 0.480 14.989 -0.982 15.029 Atomic orbital electron populations 1.20215 0.83927 1.04025 1.03669 1.22896 0.98742 0.90105 0.99050 1.21466 0.89090 1.00753 1.22804 1.18398 0.89764 0.82850 1.01273 1.43130 1.07324 1.06191 1.72296 1.21579 0.92763 0.80469 0.74456 1.90593 1.28181 1.73755 1.47890 1.20950 0.92346 0.92382 1.03161 0.86697 1.21799 1.00254 1.02892 0.94895 1.21976 1.05930 0.92032 0.96157 1.23178 0.95403 1.00225 1.00543 1.22776 0.94789 1.03296 1.00468 1.49157 1.06284 1.02918 1.56986 1.19215 0.78638 0.88963 0.97807 1.21394 1.13765 1.32722 0.91568 0.93604 1.25673 0.95325 0.94244 1.02075 1.69986 1.19491 1.32648 1.32947 0.85399 0.77957 0.78603 0.78790 1.20204 1.19167 1.19630 1.77291 0.86468 1.23635 1.28374 0.89728 0.88640 0.90635 0.81547 0.74349 0.92160 0.88384 0.92049 0.86931 0.87964 0.86827 0.88613 0.90877 0.95557 0.93430 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.44 71.23 0.74 -0.98 16 2 C 0.06 2.35 7.21 43.07 0.31 2.66 16 3 C -0.31 -12.99 9.58 22.14 0.21 -12.78 16 4 C 0.30 13.10 7.66 131.32 1.01 14.11 16 5 N -0.64 -22.89 5.31 -308.56 -1.64 -24.53 16 6 C 0.52 16.18 6.99 87.65 0.61 16.79 16 7 O -0.53 -19.09 12.21 -3.05 -0.04 -19.13 16 8 C -0.07 -1.44 2.88 -11.54 -0.03 -1.48 16 9 H 0.12 2.19 7.90 -2.39 -0.02 2.17 16 10 C -0.14 -2.48 9.07 71.98 0.65 -1.83 16 11 C -0.14 -2.80 4.73 -10.79 -0.05 -2.85 16 12 C -0.16 -2.43 10.18 30.59 0.31 -2.12 16 13 C -0.18 -3.78 8.97 30.59 0.27 -3.51 16 14 N -0.37 -18.05 3.60 -348.71 -1.26 -19.31 16 15 C 0.27 14.23 6.01 85.63 0.51 14.75 16 16 C -0.56 -30.70 9.39 25.60 0.24 -30.46 16 17 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 18 C 0.03 1.53 5.46 84.66 0.46 1.99 16 19 N -0.91 -49.96 13.29 21.45 0.28 -49.67 16 20 Si 0.97 42.15 29.54 68.60 2.03 44.17 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 N -0.33 -16.14 12.56 -47.45 -0.60 -16.74 16 25 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.17 6.75 5.83 -2.91 -0.02 6.73 16 29 H 0.42 13.95 7.38 -92.71 -0.68 13.27 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.14 7.56 -2.39 -0.02 1.12 16 33 H 0.11 2.11 8.11 -2.39 -0.02 2.09 16 34 H 0.10 1.44 8.05 -2.39 -0.02 1.42 16 35 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.86 8.10 -2.38 -0.02 1.84 16 38 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.05 2.39 7.50 -2.39 -0.02 2.37 16 40 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -67.41 338.08 4.40 -63.01 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.36 Total: 27.92 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 5.26 Total: -5.72 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -3.21 Total: -110.24 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.04 Total: -19.13 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -67.41 4.40 -63.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531348743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.019 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds