Wall clock time and date at job start Mon Mar 30 2020 02:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39762 * 125.83544 * 2 1 4 4 C 1.36104 * 107.82595 * 180.14595 * 3 2 1 5 5 N 1.39474 * 126.21749 * 179.90874 * 4 3 2 6 6 C 1.34776 * 119.99797 * 359.67755 * 5 4 3 7 7 O 1.21294 * 119.99944 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00175 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.47060 * 60.00522 * 8 6 5 10 10 C 1.52997 * 109.47212 * 300.00467 * 8 6 5 11 11 C 1.53002 * 109.47419 * 180.02562 * 8 6 5 12 12 C 1.53001 * 117.49910 * 248.62497 * 11 8 6 13 13 C 1.52994 * 117.50126 * 180.02562 * 11 8 6 14 14 N 1.35258 * 107.56978 * 359.63764 * 4 3 2 15 15 C 1.46504 * 126.04758 * 180.22794 * 14 4 3 16 16 C 1.50696 * 109.46826 * 90.00417 * 15 14 4 17 17 H 1.08001 * 120.00717 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99707 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00330 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99783 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47512 * 90.00109 * 20 18 16 22 22 H 1.48501 * 109.47147 * 209.99876 * 20 18 16 23 23 H 1.48504 * 109.47287 * 329.99890 * 20 18 16 24 24 N 1.30851 * 125.84267 * 179.74441 * 2 1 3 25 25 H 1.08996 * 109.47132 * 270.23261 * 1 2 3 26 26 H 1.08999 * 109.47796 * 30.23513 * 1 2 3 27 27 H 1.09001 * 109.46930 * 150.23663 * 1 2 3 28 28 H 1.07998 * 126.08713 * 0.02562 * 3 2 1 29 29 H 0.96995 * 120.00472 * 179.69167 * 5 4 3 30 30 H 1.09002 * 109.47153 * 299.99998 * 10 8 6 31 31 H 1.08998 * 109.47533 * 59.99628 * 10 8 6 32 32 H 1.08996 * 109.47853 * 179.97438 * 10 8 6 33 33 H 1.09007 * 115.54675 * 34.32560 * 11 8 6 34 34 H 1.09004 * 117.49564 * 359.97438 * 12 11 8 35 35 H 1.08997 * 117.50086 * 145.01519 * 12 11 8 36 36 H 1.09000 * 117.49953 * 214.97795 * 13 11 8 37 37 H 1.09001 * 117.49780 * 359.97438 * 13 11 8 38 38 H 1.09000 * 109.46745 * 210.00154 * 15 14 4 39 39 H 1.09000 * 109.47241 * 330.00235 * 15 14 4 40 40 H 0.96993 * 120.00241 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 -0.0033 5 7 4.7512 1.5276 -0.0062 6 6 4.6155 2.8685 -0.0125 7 8 3.5094 3.3662 -0.0151 8 6 5.8382 3.7495 -0.0162 9 1 6.4336 3.5410 -0.9051 10 6 6.6733 3.4683 1.2345 11 6 5.4087 5.2180 -0.0225 12 6 5.6852 6.0295 -1.2897 13 6 6.5129 6.2770 -0.0276 14 7 3.6092 -0.6403 0.0029 15 6 4.7871 -1.5114 0.0068 16 6 5.1909 -1.8037 1.4289 17 1 4.6269 -1.3824 2.2480 18 6 6.2805 -2.6091 1.6845 19 7 6.9671 -3.1226 0.6872 20 14 6.7815 -2.9708 3.4473 21 1 6.0812 -4.1919 3.9204 22 1 8.2494 -3.1863 3.5104 23 1 6.4122 -1.8218 4.3126 24 7 2.2732 -1.0607 0.0047 25 1 -0.3633 0.0042 1.0276 26 1 -0.3635 0.8878 -0.5175 27 1 -0.3633 -0.8921 -0.5102 28 1 1.9901 2.1597 0.0004 29 1 5.6357 1.1296 -0.0039 30 1 6.0779 3.6768 2.1234 31 1 6.9793 2.4222 1.2395 32 1 7.5579 4.1051 1.2317 33 1 4.4971 5.4436 0.5311 34 1 6.1734 5.5173 -2.1188 35 1 4.9555 6.7891 -1.5702 36 1 6.3279 7.1996 0.5227 37 1 7.5453 5.9276 -0.0260 38 1 4.5499 -2.4453 -0.5028 39 1 5.6084 -1.0143 -0.5093 40 1 7.7338 -3.6888 0.8670 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531348744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:23 Heat of formation + Delta-G solvation = 53.203729 kcal Electronic energy + Delta-G solvation = -21519.151475 eV Core-core repulsion = 18336.132972 eV Total energy + Delta-G solvation = -3183.018504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.89220 -39.53412 -37.32955 -34.71720 -33.76484 -32.38198 -31.90514 -29.11781 -28.09872 -26.02872 -25.17555 -23.00210 -22.40246 -22.12443 -20.13913 -19.63818 -19.05124 -17.16635 -16.76072 -16.36243 -15.69750 -15.23456 -14.77109 -14.52189 -14.22007 -14.05021 -13.74461 -13.08191 -12.84553 -12.75643 -12.49578 -12.30698 -12.17457 -11.97161 -11.75470 -11.58257 -11.53956 -11.07619 -11.04264 -10.89804 -10.49311 -10.36312 -10.31358 -10.12820 -9.81772 -9.80192 -9.40178 -8.72908 -7.89774 -7.41081 -6.34163 -4.42571 2.30659 2.83863 3.14082 3.16009 3.23081 3.27522 3.61140 3.68876 3.84601 4.23786 4.46253 4.57436 4.77172 4.93444 4.99217 5.13269 5.28150 5.32085 5.38459 5.48731 5.61989 5.67590 5.73790 5.83159 5.98138 6.04996 6.08738 6.17626 6.18530 6.24346 6.31168 6.46599 6.69519 6.84284 7.04890 7.53991 7.59254 7.66126 7.79471 7.94252 8.35450 8.62840 8.72180 9.25027 10.72977 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.005896 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.484505 B = 4748.108545 C = 6459.266565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.296 4.296 4 C 0.302 3.698 5 N -0.640 5.640 6 C 0.525 3.475 7 O -0.513 6.513 8 C -0.074 4.074 9 H 0.100 0.900 10 C -0.146 4.146 11 C -0.133 4.133 12 C -0.178 4.178 13 C -0.178 4.178 14 N -0.345 5.345 15 C 0.257 3.743 16 C -0.540 4.540 17 H 0.065 0.935 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.906 3.094 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.286 5.286 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.161 0.839 29 H 0.415 0.585 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 14.787 -2.227 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C -0.328 4.328 4 C 0.079 3.921 5 N -0.287 5.287 6 C 0.312 3.688 7 O -0.387 6.387 8 C -0.095 4.095 9 H 0.118 0.882 10 C -0.204 4.204 11 C -0.151 4.151 12 C -0.215 4.215 13 C -0.215 4.215 14 N -0.131 5.131 15 C 0.139 3.861 16 C -0.578 4.578 17 H 0.083 0.917 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.197 1.197 24 N -0.112 5.112 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.178 0.822 29 H 0.252 0.748 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.136 0.864 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.586 13.695 -2.278 13.896 hybrid contribution 1.042 0.190 0.915 1.400 sum 0.456 13.885 -1.363 13.959 Atomic orbital electron populations 1.20012 0.87627 1.02290 1.02118 1.22031 0.96494 0.91083 1.01889 1.21263 0.89100 1.00402 1.22069 1.17969 0.88142 0.83344 1.02604 1.42841 1.08159 1.05693 1.71991 1.20524 0.91385 0.81172 0.75756 1.90612 1.26868 1.73697 1.47510 1.20822 0.94313 0.92977 1.01426 0.88208 1.21809 0.99644 1.02686 0.96257 1.22032 1.00605 0.89946 1.02556 1.23009 1.03255 1.03383 0.91827 1.22965 0.96599 1.00223 1.01698 1.49338 1.06504 1.02211 1.55009 1.19611 0.77850 0.89764 0.98895 1.21343 1.13270 1.31857 0.91338 0.91719 1.24932 0.95687 0.94867 0.98167 1.69914 1.19211 1.32531 1.31134 0.86361 0.77619 0.79107 0.83660 1.20197 1.20842 1.19679 1.77343 0.86163 1.21820 1.25853 0.91347 0.91180 0.91580 0.82190 0.74783 0.91649 0.91391 0.91128 0.86429 0.88852 0.88757 0.88732 0.88687 0.92578 0.93869 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.00 0.38 -0.56 16 2 C 0.05 1.02 7.21 -82.44 -0.59 0.43 16 3 C -0.30 -6.21 9.58 -39.78 -0.38 -6.59 16 4 C 0.30 6.48 7.66 -153.16 -1.17 5.31 16 5 N -0.64 -11.33 5.31 -11.46 -0.06 -11.39 16 6 C 0.53 8.35 7.12 -10.99 -0.08 8.28 16 7 O -0.51 -9.46 12.78 5.55 0.07 -9.39 16 8 C -0.07 -0.86 2.88 -91.77 -0.26 -1.12 16 9 H 0.10 1.00 7.90 -51.93 -0.41 0.59 16 10 C -0.15 -1.55 8.93 37.16 0.33 -1.22 16 11 C -0.13 -1.45 4.76 -90.62 -0.43 -1.88 16 12 C -0.18 -1.67 10.17 -26.76 -0.27 -1.95 16 13 C -0.18 -1.52 9.73 -26.76 -0.26 -1.78 16 14 N -0.35 -8.20 3.60 -61.57 -0.22 -8.42 16 15 C 0.26 6.44 6.01 -5.19 -0.03 6.41 16 16 C -0.54 -14.50 9.39 -34.44 -0.32 -14.82 16 17 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -24.24 13.29 55.43 0.74 -23.51 16 20 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 N -0.29 -6.78 12.56 33.65 0.42 -6.36 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.16 3.27 5.83 -52.49 -0.31 2.96 16 29 H 0.42 6.80 7.38 -40.82 -0.30 6.50 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.76 7.56 -51.93 -0.39 0.36 16 32 H 0.07 0.60 7.29 -51.93 -0.38 0.22 16 33 H 0.12 1.47 7.47 -51.93 -0.39 1.08 16 34 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.72 7.61 -51.93 -0.40 0.33 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 39 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -30.93 337.44 -8.07 -39.00 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.88 Total: 7.22 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -3.20 Total: -7.82 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.88 Total: -49.67 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.07 Total: -9.39 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.93 -8.07 -39.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531348744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.202 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds