Wall clock time and date at job start Mon Mar 30 2020 02:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39762 * 125.83544 * 2 1 4 4 C 1.36104 * 107.82595 * 180.14595 * 3 2 1 5 5 N 1.39474 * 126.21749 * 179.90874 * 4 3 2 6 6 C 1.34776 * 119.99797 * 359.67755 * 5 4 3 7 7 O 1.21294 * 119.99944 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00175 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.47060 * 60.00522 * 8 6 5 10 10 C 1.52997 * 109.47212 * 300.00467 * 8 6 5 11 11 C 1.53002 * 109.47419 * 180.02562 * 8 6 5 12 12 C 1.53001 * 117.49910 * 248.62497 * 11 8 6 13 13 C 1.52994 * 117.50126 * 180.02562 * 11 8 6 14 14 N 1.35258 * 107.56978 * 359.63764 * 4 3 2 15 15 C 1.46504 * 126.04758 * 180.22794 * 14 4 3 16 16 C 1.50696 * 109.46826 * 90.00417 * 15 14 4 17 17 H 1.08001 * 120.00717 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99707 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00330 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99783 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47512 * 90.00109 * 20 18 16 22 22 H 1.48501 * 109.47147 * 209.99876 * 20 18 16 23 23 H 1.48504 * 109.47287 * 329.99890 * 20 18 16 24 24 N 1.30851 * 125.84267 * 179.74441 * 2 1 3 25 25 H 1.08996 * 109.47132 * 270.23261 * 1 2 3 26 26 H 1.08999 * 109.47796 * 30.23513 * 1 2 3 27 27 H 1.09001 * 109.46930 * 150.23663 * 1 2 3 28 28 H 1.07998 * 126.08713 * 0.02562 * 3 2 1 29 29 H 0.96995 * 120.00472 * 179.69167 * 5 4 3 30 30 H 1.09002 * 109.47153 * 299.99998 * 10 8 6 31 31 H 1.08998 * 109.47533 * 59.99628 * 10 8 6 32 32 H 1.08996 * 109.47853 * 179.97438 * 10 8 6 33 33 H 1.09007 * 115.54675 * 34.32560 * 11 8 6 34 34 H 1.09004 * 117.49564 * 359.97438 * 12 11 8 35 35 H 1.08997 * 117.50086 * 145.01519 * 12 11 8 36 36 H 1.09000 * 117.49953 * 214.97795 * 13 11 8 37 37 H 1.09001 * 117.49780 * 359.97438 * 13 11 8 38 38 H 1.09000 * 109.46745 * 210.00154 * 15 14 4 39 39 H 1.09000 * 109.47241 * 330.00235 * 15 14 4 40 40 H 0.96993 * 120.00241 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 -0.0033 5 7 4.7512 1.5276 -0.0062 6 6 4.6155 2.8685 -0.0125 7 8 3.5094 3.3662 -0.0151 8 6 5.8382 3.7495 -0.0162 9 1 6.4336 3.5410 -0.9051 10 6 6.6733 3.4683 1.2345 11 6 5.4087 5.2180 -0.0225 12 6 5.6852 6.0295 -1.2897 13 6 6.5129 6.2770 -0.0276 14 7 3.6092 -0.6403 0.0029 15 6 4.7871 -1.5114 0.0068 16 6 5.1909 -1.8037 1.4289 17 1 4.6269 -1.3824 2.2480 18 6 6.2805 -2.6091 1.6845 19 7 6.9671 -3.1226 0.6872 20 14 6.7815 -2.9708 3.4473 21 1 6.0812 -4.1919 3.9204 22 1 8.2494 -3.1863 3.5104 23 1 6.4122 -1.8218 4.3126 24 7 2.2732 -1.0607 0.0047 25 1 -0.3633 0.0042 1.0276 26 1 -0.3635 0.8878 -0.5175 27 1 -0.3633 -0.8921 -0.5102 28 1 1.9901 2.1597 0.0004 29 1 5.6357 1.1296 -0.0039 30 1 6.0779 3.6768 2.1234 31 1 6.9793 2.4222 1.2395 32 1 7.5579 4.1051 1.2317 33 1 4.4971 5.4436 0.5311 34 1 6.1734 5.5173 -2.1188 35 1 4.9555 6.7891 -1.5702 36 1 6.3279 7.1996 0.5227 37 1 7.5453 5.9276 -0.0260 38 1 4.5499 -2.4453 -0.5028 39 1 5.6084 -1.0143 -0.5093 40 1 7.7338 -3.6888 0.8670 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531348744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:23 Heat of formation + Delta-G solvation = 35.525595 kcal Electronic energy + Delta-G solvation = -21519.918057 eV Core-core repulsion = 18336.132972 eV Total energy + Delta-G solvation = -3183.785085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.46120 -40.87880 -38.25760 -36.28000 -35.60657 -33.89767 -33.15309 -30.74429 -29.70200 -27.82052 -26.15303 -24.81123 -23.49496 -23.06923 -21.44901 -21.12460 -20.31491 -18.91094 -18.48537 -17.82611 -16.97852 -16.68318 -16.34668 -15.85613 -15.70858 -15.22144 -14.96839 -14.55865 -14.41804 -14.04958 -13.97571 -13.59298 -13.40478 -13.20394 -13.15652 -12.94457 -12.87910 -12.72557 -12.30453 -12.25367 -11.93170 -11.89535 -11.68740 -11.45814 -11.20676 -10.92067 -10.77297 -10.76354 -9.64362 -9.07334 -8.37204 -6.54741 0.79434 1.33642 1.35866 1.38967 1.49179 1.63965 2.05473 2.19029 2.34867 2.93201 2.93926 3.45871 3.62527 3.82429 3.98596 4.14764 4.19647 4.29976 4.44332 4.49594 4.61836 4.71151 4.80334 4.82453 4.87134 4.88293 4.90277 4.92091 4.98185 5.07849 5.20476 5.23763 5.26345 5.32358 5.38028 5.50195 5.75842 5.95356 6.15321 6.28851 6.56317 6.96659 7.03145 7.17446 8.69415 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.005896 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.484505 B = 4748.108545 C = 6459.266565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.058 3.942 3 C -0.310 4.310 4 C 0.299 3.701 5 N -0.639 5.639 6 C 0.523 3.477 7 O -0.539 6.539 8 C -0.062 4.062 9 H 0.122 0.878 10 C -0.144 4.144 11 C -0.155 4.155 12 C -0.180 4.180 13 C -0.156 4.156 14 N -0.367 5.367 15 C 0.272 3.728 16 C -0.556 4.556 17 H 0.046 0.954 18 C 0.029 3.971 19 N -0.913 5.913 20 Si 0.969 3.031 21 H -0.277 1.277 22 H -0.267 1.267 23 H -0.271 1.271 24 N -0.331 5.331 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.166 0.834 29 H 0.420 0.580 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.027 0.973 39 H 0.048 0.952 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.781 16.244 -1.709 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.341 4.341 4 C 0.076 3.924 5 N -0.287 5.287 6 C 0.312 3.688 7 O -0.414 6.414 8 C -0.083 4.083 9 H 0.140 0.860 10 C -0.201 4.201 11 C -0.173 4.173 12 C -0.217 4.217 13 C -0.193 4.193 14 N -0.153 5.153 15 C 0.153 3.847 16 C -0.594 4.594 17 H 0.064 0.936 18 C -0.173 4.173 19 N -0.551 5.551 20 Si 0.793 3.207 21 H -0.203 1.203 22 H -0.192 1.192 23 H -0.196 1.196 24 N -0.157 5.157 25 H 0.103 0.897 26 H 0.114 0.886 27 H 0.094 0.906 28 H 0.184 0.816 29 H 0.258 0.742 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.368 15.174 -1.769 15.281 hybrid contribution 0.682 -0.186 0.714 1.004 sum 1.050 14.988 -1.055 15.062 Atomic orbital electron populations 1.20219 0.83888 1.04048 1.03699 1.22896 0.98759 0.90055 0.99034 1.21468 0.89143 1.00759 1.22773 1.18389 0.89728 0.82894 1.01385 1.43075 1.07408 1.06101 1.72124 1.21493 0.92616 0.80562 0.74164 1.90584 1.28444 1.73886 1.48476 1.20873 0.92285 0.92302 1.02860 0.86006 1.21827 1.00289 1.02871 0.95158 1.21924 1.01263 0.89972 1.04178 1.23113 1.03590 1.03004 0.91960 1.23070 0.96532 0.99288 1.00372 1.49166 1.06311 1.02870 1.56916 1.19228 0.78604 0.88962 0.97870 1.21387 1.13750 1.32713 0.91527 0.93558 1.25666 0.95317 0.94226 1.02053 1.69984 1.19512 1.32647 1.32970 0.85398 0.77933 0.78603 0.78806 1.20274 1.19194 1.19564 1.77292 0.86455 1.23602 1.28309 0.89697 0.88640 0.90592 0.81631 0.74202 0.92750 0.92129 0.88271 0.88599 0.88093 0.88606 0.87727 0.87052 0.95525 0.93424 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.73 10.44 71.23 0.74 -0.99 16 2 C 0.06 2.38 7.21 43.07 0.31 2.69 16 3 C -0.31 -13.07 9.58 22.14 0.21 -12.86 16 4 C 0.30 13.09 7.66 131.32 1.01 14.09 16 5 N -0.64 -22.87 5.31 -308.56 -1.64 -24.51 16 6 C 0.52 16.53 7.12 87.66 0.62 17.15 16 7 O -0.54 -19.96 12.78 -3.07 -0.04 -20.00 16 8 C -0.06 -1.34 2.88 -11.54 -0.03 -1.38 16 9 H 0.12 2.14 7.90 -2.39 -0.02 2.12 16 10 C -0.14 -2.81 8.93 71.98 0.64 -2.16 16 11 C -0.15 -3.14 4.76 -10.79 -0.05 -3.19 16 12 C -0.18 -3.00 10.17 30.58 0.31 -2.69 16 13 C -0.16 -2.20 9.73 30.58 0.30 -1.90 16 14 N -0.37 -18.00 3.60 -348.72 -1.26 -19.25 16 15 C 0.27 14.17 6.01 85.63 0.51 14.69 16 16 C -0.56 -30.53 9.39 25.60 0.24 -30.29 16 17 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 18 C 0.03 1.55 5.46 84.66 0.46 2.01 16 19 N -0.91 -49.83 13.29 21.45 0.28 -49.55 16 20 Si 0.97 41.98 29.54 68.60 2.03 44.01 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 N -0.33 -16.08 12.56 -47.45 -0.60 -16.67 16 25 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.17 6.78 5.83 -2.91 -0.02 6.76 16 29 H 0.42 13.92 7.38 -92.71 -0.68 13.24 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.27 7.56 -2.39 -0.02 1.26 16 32 H 0.10 1.37 7.29 -2.39 -0.02 1.35 16 33 H 0.10 2.38 7.47 -2.38 -0.02 2.36 16 34 H 0.10 1.53 8.05 -2.38 -0.02 1.51 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 1.24 7.61 -2.39 -0.02 1.22 16 38 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 2.39 7.50 -2.39 -0.02 2.37 16 40 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -67.65 337.44 4.42 -63.23 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 0.36 Total: 27.58 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 5.28 Total: -4.83 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -3.21 Total: -109.99 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.04 Total: -20.00 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -67.65 4.42 -63.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531348744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.756 kcal (2) G-P(sol) polarization free energy of solvation -67.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds