Wall clock time and date at job start Mon Mar 30 2020 02:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 120.00171 * 2 1 4 4 C 1.53007 * 109.46858 * 124.99886 * 3 2 1 5 5 C 1.52998 * 109.46603 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46850 * 180.02562 * 5 4 3 7 7 O 1.21293 * 120.00109 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99978 * 180.02562 * 6 5 4 9 9 C 1.39471 * 119.99891 * 179.97438 * 8 6 5 10 10 C 1.36110 * 126.21626 * 0.14378 * 9 8 6 11 11 C 1.39762 * 107.82869 * 180.26709 * 10 9 8 12 12 C 1.50694 * 125.84077 * 179.72419 * 11 10 9 13 13 N 1.30855 * 108.31847 * 359.75600 * 11 10 9 14 14 N 1.35266 * 126.21450 * 180.02562 * 9 8 6 15 15 C 1.46491 * 126.04623 * 359.97438 * 14 9 8 16 16 C 1.50702 * 109.46957 * 269.71277 * 15 14 9 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 H 1.08004 * 120.00077 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00023 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.00361 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.46929 * 5.00330 * 3 2 1 28 28 H 1.09002 * 109.47297 * 244.99571 * 3 2 1 29 29 H 1.09005 * 109.46923 * 60.00387 * 4 3 2 30 30 H 1.08990 * 109.47126 * 300.00272 * 4 3 2 31 31 H 1.08994 * 109.47657 * 59.99974 * 5 4 3 32 32 H 1.09002 * 109.47185 * 299.99460 * 5 4 3 33 33 H 0.97004 * 120.00013 * 359.97438 * 8 6 5 34 34 H 1.07999 * 126.09101 * 0.05355 * 10 9 8 35 35 H 1.09003 * 109.47188 * 270.01578 * 12 11 10 36 36 H 1.08998 * 109.47119 * 30.01737 * 12 11 10 37 37 H 1.09003 * 109.47108 * 150.01312 * 12 11 10 38 38 H 1.09004 * 109.47166 * 149.71543 * 15 14 9 39 39 H 1.08994 * 109.47507 * 29.71250 * 15 14 9 40 40 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7996 2.6583 1.1820 6 6 4.7570 2.6856 2.3456 7 8 4.8211 1.7384 3.1006 8 7 5.5412 3.7629 2.5479 9 6 6.4269 3.7883 3.6250 10 6 6.6042 2.7999 4.5438 11 6 7.5758 3.2294 5.4521 12 6 8.0791 2.4503 6.6398 13 7 7.9732 4.4239 5.0951 14 7 7.2672 4.7989 3.9450 15 6 7.4096 6.0638 3.2201 16 6 8.4721 5.9190 2.1612 17 1 8.9892 4.9786 2.0400 18 6 8.7797 6.9852 1.3428 19 7 9.7031 6.8572 0.4151 20 14 7.8849 8.6116 1.5519 21 1 8.6231 9.4618 2.5201 22 1 7.8079 9.3061 0.2415 23 1 6.5125 8.3598 2.0600 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6214 1.4026 -0.9314 29 1 3.7400 0.5065 1.0921 30 1 2.4773 1.2355 2.1130 31 1 3.0945 3.4846 1.2718 32 1 4.3574 2.7562 0.2507 33 1 5.4897 4.5205 1.9443 34 1 6.0841 1.8538 4.5688 35 1 7.4673 2.6816 7.5118 36 1 8.0187 1.3831 6.4264 37 1 9.1153 2.7226 6.8403 38 1 7.6961 6.8517 3.9168 39 1 6.4609 6.3220 2.7498 40 1 9.9197 7.6074 -0.1603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531366312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:52 Heat of formation + Delta-G solvation = 45.770959 kcal Electronic energy + Delta-G solvation = -20848.081417 eV Core-core repulsion = 17664.740605 eV Total energy + Delta-G solvation = -3183.340813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91745 -39.30252 -36.21246 -34.75964 -33.75210 -32.60141 -32.15637 -29.57662 -28.67850 -27.04579 -26.30868 -23.05116 -22.29651 -20.88757 -20.09317 -19.71118 -19.18817 -17.22430 -16.92345 -16.41621 -16.12852 -15.34870 -14.96104 -14.56827 -14.34364 -13.94400 -13.71040 -13.60817 -13.11021 -12.77289 -12.72111 -12.53391 -12.31040 -11.93172 -11.89018 -11.81870 -11.71207 -11.14938 -11.11131 -10.87042 -10.85309 -10.48199 -10.24666 -9.94155 -9.77395 -9.56398 -9.50653 -8.87648 -7.95719 -7.48272 -6.34993 -4.39450 2.05194 2.23688 2.77940 3.06798 3.08392 3.13164 3.17076 3.56491 3.70006 4.12418 4.54289 4.60017 4.79340 4.91603 5.00445 5.07811 5.30027 5.30481 5.34542 5.49208 5.59614 5.61990 5.70833 5.97280 5.99828 6.04727 6.13154 6.18054 6.22466 6.32989 6.36880 6.40584 6.54432 6.64590 6.74021 7.18557 7.45055 7.56800 7.77235 8.17844 8.32283 8.57311 8.71547 9.19574 10.77274 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.004591 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.830607 B = 6097.094680 C = 7818.319334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.097 4.097 4 C -0.099 4.099 5 C -0.137 4.137 6 C 0.518 3.482 7 O -0.515 6.515 8 N -0.643 5.643 9 C 0.305 3.695 10 C -0.293 4.293 11 C 0.054 3.946 12 C -0.063 4.063 13 N -0.284 5.284 14 N -0.345 5.345 15 C 0.230 3.770 16 C -0.546 4.546 17 H 0.081 0.919 18 C 0.080 3.920 19 N -0.883 5.883 20 Si 0.874 3.126 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.266 1.266 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.415 0.585 34 H 0.163 0.837 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.039 0.961 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.481 -8.438 0.494 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.134 4.134 4 C -0.137 4.137 5 C -0.177 4.177 6 C 0.305 3.695 7 O -0.390 6.390 8 N -0.290 5.290 9 C 0.083 3.917 10 C -0.325 4.325 11 C -0.111 4.111 12 C -0.121 4.121 13 N -0.109 5.109 14 N -0.130 5.130 15 C 0.111 3.889 16 C -0.584 4.584 17 H 0.099 0.901 18 C -0.125 4.125 19 N -0.520 5.520 20 Si 0.700 3.300 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.190 1.190 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.251 0.749 34 H 0.180 0.820 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.585 -7.914 1.022 16.625 hybrid contribution -0.771 0.869 -0.772 1.395 sum -15.356 -7.045 0.250 16.897 Atomic orbital electron populations 1.23837 0.95996 1.01734 1.02127 1.22978 0.96008 0.98664 0.99009 1.20814 0.98221 0.95453 0.98922 1.21291 0.97711 0.96077 0.98627 1.21686 0.97935 1.00989 0.97086 1.20745 0.80667 0.81354 0.86715 1.90632 1.67118 1.34764 1.46442 1.42902 1.37622 1.20939 1.27537 1.17961 0.91469 0.91510 0.90765 1.21286 1.09036 1.02550 0.99659 1.22059 0.97138 0.93650 0.98219 1.20031 1.00899 0.98164 0.93046 1.77356 1.18224 1.15181 1.00178 1.48887 1.28345 1.14642 1.21119 1.19928 0.98240 0.78833 0.91926 1.21199 1.20661 1.01313 1.15209 0.90066 1.24830 0.94723 0.98437 0.94493 1.69873 1.30395 1.32121 1.19575 0.86894 0.80534 0.84186 0.78375 1.19472 1.20474 1.19038 0.88671 0.88668 0.87323 0.91396 0.90693 0.90760 0.90924 0.88498 0.88139 0.74877 0.81980 0.91329 0.91026 0.91401 0.93211 0.94318 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 14.32 29.02 0.42 -1.11 16 2 C -0.15 -1.22 9.52 -36.02 -0.34 -1.56 16 3 C -0.10 -0.77 5.66 -27.88 -0.16 -0.93 16 4 C -0.10 -0.97 4.49 -26.73 -0.12 -1.09 16 5 C -0.14 -1.38 5.70 -27.88 -0.16 -1.54 16 6 C 0.52 7.79 7.79 -10.98 -0.09 7.70 16 7 O -0.52 -9.17 13.11 5.55 0.07 -9.10 16 8 N -0.64 -10.92 5.41 -11.46 -0.06 -10.98 16 9 C 0.30 6.38 7.66 -153.16 -1.17 5.21 16 10 C -0.29 -6.02 9.58 -39.78 -0.38 -6.40 16 11 C 0.05 1.10 7.21 -82.44 -0.59 0.50 16 12 C -0.06 -0.93 10.44 36.00 0.38 -0.56 16 13 N -0.28 -6.59 12.56 33.65 0.42 -6.17 16 14 N -0.34 -7.97 3.60 -61.58 -0.22 -8.19 16 15 C 0.23 5.40 5.08 -5.20 -0.03 5.37 16 16 C -0.55 -14.92 9.94 -34.44 -0.34 -15.26 16 17 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 18 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 19 N -0.88 -25.62 13.96 55.43 0.77 -24.84 16 20 Si 0.87 19.47 27.47 -169.99 -4.67 14.80 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.27 -5.46 6.54 56.52 0.37 -5.09 16 24 H 0.09 0.63 8.06 -52.48 -0.42 0.21 16 25 H 0.09 0.66 7.84 -52.49 -0.41 0.25 16 26 H 0.11 0.84 8.06 -52.48 -0.42 0.42 16 27 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 30 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.41 6.30 7.96 -40.82 -0.32 5.98 16 34 H 0.16 3.23 5.83 -52.49 -0.31 2.93 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 1.17 7.58 -51.93 -0.39 0.78 16 39 H 0.04 0.82 6.54 -51.93 -0.34 0.48 16 40 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -32.80 340.80 -7.23 -40.03 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.99 Total: 6.89 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -2.69 Total: -7.57 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: 0.91 Total: -50.18 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.67 Total: 14.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.80 -7.23 -40.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531366312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.801 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds