Wall clock time and date at job start Mon Mar 30 2020 02:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 120.00171 * 2 1 4 4 C 1.53007 * 109.46858 * 124.99886 * 3 2 1 5 5 C 1.52998 * 109.46603 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46850 * 180.02562 * 5 4 3 7 7 O 1.21293 * 120.00109 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99978 * 180.02562 * 6 5 4 9 9 C 1.39471 * 119.99891 * 179.97438 * 8 6 5 10 10 C 1.36110 * 126.21626 * 0.14378 * 9 8 6 11 11 C 1.39762 * 107.82869 * 180.26709 * 10 9 8 12 12 C 1.50694 * 125.84077 * 179.72419 * 11 10 9 13 13 N 1.30855 * 108.31847 * 359.75600 * 11 10 9 14 14 N 1.35266 * 126.21450 * 180.02562 * 9 8 6 15 15 C 1.46491 * 126.04623 * 359.97438 * 14 9 8 16 16 C 1.50702 * 109.46957 * 269.71277 * 15 14 9 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 H 1.08004 * 120.00077 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00023 * 0.02562 * 1 2 3 26 26 H 1.08006 * 120.00361 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.46929 * 5.00330 * 3 2 1 28 28 H 1.09002 * 109.47297 * 244.99571 * 3 2 1 29 29 H 1.09005 * 109.46923 * 60.00387 * 4 3 2 30 30 H 1.08990 * 109.47126 * 300.00272 * 4 3 2 31 31 H 1.08994 * 109.47657 * 59.99974 * 5 4 3 32 32 H 1.09002 * 109.47185 * 299.99460 * 5 4 3 33 33 H 0.97004 * 120.00013 * 359.97438 * 8 6 5 34 34 H 1.07999 * 126.09101 * 0.05355 * 10 9 8 35 35 H 1.09003 * 109.47188 * 270.01578 * 12 11 10 36 36 H 1.08998 * 109.47119 * 30.01737 * 12 11 10 37 37 H 1.09003 * 109.47108 * 150.01312 * 12 11 10 38 38 H 1.09004 * 109.47166 * 149.71543 * 15 14 9 39 39 H 1.08994 * 109.47507 * 29.71250 * 15 14 9 40 40 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7996 2.6583 1.1820 6 6 4.7570 2.6856 2.3456 7 8 4.8211 1.7384 3.1006 8 7 5.5412 3.7629 2.5479 9 6 6.4269 3.7883 3.6250 10 6 6.6042 2.7999 4.5438 11 6 7.5758 3.2294 5.4521 12 6 8.0791 2.4503 6.6398 13 7 7.9732 4.4239 5.0951 14 7 7.2672 4.7989 3.9450 15 6 7.4096 6.0638 3.2201 16 6 8.4721 5.9190 2.1612 17 1 8.9892 4.9786 2.0400 18 6 8.7797 6.9852 1.3428 19 7 9.7031 6.8572 0.4151 20 14 7.8849 8.6116 1.5519 21 1 8.6231 9.4618 2.5201 22 1 7.8079 9.3061 0.2415 23 1 6.5125 8.3598 2.0600 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6214 1.4026 -0.9314 29 1 3.7400 0.5065 1.0921 30 1 2.4773 1.2355 2.1130 31 1 3.0945 3.4846 1.2718 32 1 4.3574 2.7562 0.2507 33 1 5.4897 4.5205 1.9443 34 1 6.0841 1.8538 4.5688 35 1 7.4673 2.6816 7.5118 36 1 8.0187 1.3831 6.4264 37 1 9.1153 2.7226 6.8403 38 1 7.6961 6.8517 3.9168 39 1 6.4609 6.3220 2.7498 40 1 9.9197 7.6074 -0.1603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531366312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:52 Heat of formation + Delta-G solvation = 25.077094 kcal Electronic energy + Delta-G solvation = -20848.978771 eV Core-core repulsion = 17664.740605 eV Total energy + Delta-G solvation = -3184.238166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44756 -40.63214 -36.93723 -36.25364 -35.53928 -33.99353 -33.37142 -31.16426 -30.09457 -28.08847 -27.93328 -24.51606 -23.71004 -22.04940 -21.21606 -20.86613 -20.41487 -19.27221 -18.46184 -17.72032 -17.12026 -16.59345 -16.42734 -15.91578 -15.70785 -15.31866 -14.86775 -14.74957 -14.47797 -14.31169 -14.11718 -13.78398 -13.52122 -13.40993 -13.11894 -12.93778 -12.63874 -12.57843 -12.46427 -12.11301 -11.84769 -11.76978 -11.75449 -11.60122 -11.44443 -10.93388 -10.89033 -10.15737 -9.62471 -9.07909 -8.43122 -6.56056 0.78282 1.28932 1.35977 1.37338 1.45797 1.48890 1.64330 2.05108 2.22876 2.24286 2.88685 3.54423 3.77452 3.84571 4.08219 4.19181 4.34610 4.39015 4.45090 4.57002 4.60961 4.68143 4.70617 4.74569 4.87694 4.89737 4.93780 4.99047 5.10311 5.13573 5.18172 5.21766 5.25438 5.43390 5.82353 5.86339 5.94917 5.98030 6.22380 6.34675 6.48379 6.94276 7.03540 7.09303 8.73400 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.004591 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.830607 B = 6097.094680 C = 7818.319334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C -0.090 4.090 4 C -0.094 4.094 5 C -0.126 4.126 6 C 0.515 3.485 7 O -0.545 6.545 8 N -0.642 5.642 9 C 0.302 3.698 10 C -0.310 4.310 11 C 0.060 3.940 12 C -0.061 4.061 13 N -0.331 5.331 14 N -0.367 5.367 15 C 0.238 3.762 16 C -0.555 4.555 17 H 0.021 0.979 18 C 0.024 3.976 19 N -0.934 5.934 20 Si 0.952 3.048 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.231 1.231 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.423 0.577 34 H 0.167 0.833 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.046 -7.513 0.466 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.184 4.184 3 C -0.127 4.127 4 C -0.133 4.133 5 C -0.166 4.166 6 C 0.305 3.695 7 O -0.420 6.420 8 N -0.291 5.291 9 C 0.079 3.921 10 C -0.342 4.342 11 C -0.106 4.106 12 C -0.120 4.120 13 N -0.155 5.155 14 N -0.153 5.153 15 C 0.118 3.882 16 C -0.593 4.593 17 H 0.039 0.961 18 C -0.176 4.176 19 N -0.572 5.572 20 Si 0.773 3.227 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.154 1.154 24 H 0.120 0.880 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.137 0.863 33 H 0.261 0.739 34 H 0.184 0.816 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.176 -7.016 0.988 18.580 hybrid contribution 0.060 0.399 -0.761 0.861 sum -17.116 -6.617 0.227 18.352 Atomic orbital electron populations 1.24013 0.95903 1.02527 1.01038 1.23075 0.96420 0.98864 1.00016 1.20765 0.97981 0.95777 0.98225 1.21236 0.97596 0.95364 0.99061 1.21794 0.97333 1.02254 0.95197 1.21791 0.80299 0.80088 0.87361 1.90609 1.67910 1.35678 1.47852 1.43153 1.37180 1.22017 1.26711 1.18387 0.91234 0.90894 0.91571 1.21495 1.09710 1.02773 1.00178 1.22896 0.95907 0.92826 0.98924 1.20231 1.01353 0.98565 0.91825 1.77292 1.19964 1.16991 1.01290 1.48826 1.29537 1.15139 1.21773 1.19763 0.98106 0.79480 0.90804 1.21223 1.21743 0.99274 1.17051 0.96076 1.25847 0.95371 1.02903 0.93477 1.70034 1.32445 1.33868 1.20880 0.85664 0.80603 0.77766 0.78645 1.19458 1.19690 1.15359 0.87986 0.87872 0.87560 0.90112 0.89873 0.92342 0.92081 0.85361 0.86258 0.73916 0.81555 0.88890 0.88995 0.90979 0.93191 0.91219 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 14.32 67.79 0.97 -1.67 16 2 C -0.17 -2.46 9.52 25.65 0.24 -2.22 16 3 C -0.09 -1.23 5.66 29.85 0.17 -1.06 16 4 C -0.09 -1.69 4.49 30.60 0.14 -1.55 16 5 C -0.13 -2.23 5.70 29.85 0.17 -2.06 16 6 C 0.51 14.92 7.79 87.66 0.68 15.60 16 7 O -0.54 -19.22 13.11 -3.07 -0.04 -19.26 16 8 N -0.64 -21.27 5.41 -308.55 -1.67 -22.94 16 9 C 0.30 12.65 7.66 131.32 1.01 13.65 16 10 C -0.31 -12.74 9.58 22.14 0.21 -12.53 16 11 C 0.06 2.41 7.21 43.07 0.31 2.72 16 12 C -0.06 -1.74 10.44 71.23 0.74 -1.00 16 13 N -0.33 -15.55 12.56 -47.45 -0.60 -16.15 16 14 N -0.37 -17.14 3.60 -348.73 -1.26 -18.40 16 15 C 0.24 11.08 5.08 85.64 0.43 11.52 16 16 C -0.55 -31.15 9.94 25.60 0.25 -30.89 16 17 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 18 C 0.02 1.33 5.47 84.66 0.46 1.79 16 19 N -0.93 -55.52 13.96 21.45 0.30 -55.22 16 20 Si 0.95 39.15 27.47 68.60 1.88 41.03 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.23 -8.14 6.54 99.48 0.65 -7.49 16 24 H 0.10 1.18 8.06 -2.91 -0.02 1.16 16 25 H 0.10 1.19 7.84 -2.91 -0.02 1.17 16 26 H 0.11 1.58 8.06 -2.91 -0.02 1.55 16 27 H 0.08 0.90 7.79 -2.39 -0.02 0.89 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.22 8.10 -2.38 -0.02 1.20 16 30 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 31 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.12 1.74 8.14 -2.39 -0.02 1.73 16 33 H 0.42 12.22 7.96 -92.70 -0.74 11.48 16 34 H 0.17 6.65 5.83 -2.91 -0.02 6.63 16 35 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 36 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.05 2.31 7.58 -2.38 -0.02 2.29 16 39 H 0.07 2.78 6.54 -2.39 -0.02 2.77 16 40 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -74.72 340.80 4.66 -70.07 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.24 Total: 28.56 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.80 Total: -7.69 kcal Atomic # 7 Polarization: -109.48 SS G_CDS: -3.22 Total: -112.71 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.04 Total: -19.26 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.88 Total: 41.03 kcal Total: -74.72 4.66 -70.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531366312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.143 kcal (2) G-P(sol) polarization free energy of solvation -74.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds