Wall clock time and date at job start Mon Mar 30 2020 01:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35228 * 119.65294 * 2 1 4 4 C 1.41353 * 119.25641 * 179.97438 * 3 2 1 5 5 N 1.34325 * 120.67303 * 179.97438 * 4 3 2 6 6 C 1.33231 * 120.00187 * 355.14032 * 5 4 3 7 7 O 1.21938 * 120.00168 * 64.79348 * 6 5 4 8 8 N 1.34782 * 120.00203 * 244.79989 * 6 5 4 9 9 C 1.46507 * 119.99556 * 359.97438 * 8 6 5 10 10 C 1.46497 * 120.00376 * 180.02562 * 8 6 5 11 11 H 1.08998 * 109.46980 * 359.97438 * 10 8 6 12 12 C 1.53004 * 109.46691 * 239.99848 * 10 8 6 13 13 C 1.50694 * 109.47224 * 119.99725 * 10 8 6 14 14 H 1.07994 * 120.00403 * 359.97438 * 13 10 8 15 15 C 1.37885 * 119.99977 * 180.02562 * 13 10 8 16 16 N 1.31515 * 119.99556 * 359.97438 * 15 13 10 17 17 Si 1.86797 * 119.99979 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47334 * 89.99900 * 17 15 13 19 19 H 1.48501 * 109.46835 * 209.99983 * 17 15 13 20 20 H 1.48503 * 109.47166 * 329.99697 * 17 15 13 21 21 C 1.41353 * 118.65541 * 359.76014 * 4 3 2 22 22 C 1.50688 * 120.37443 * 180.26722 * 21 4 3 23 23 C 1.35231 * 119.25254 * 0.46151 * 21 4 3 24 24 N 1.35535 * 119.65503 * 179.97438 * 2 1 3 25 25 H 0.96996 * 119.28200 * 0.02698 * 24 2 1 26 26 H 1.09007 * 109.47227 * 270.02662 * 1 2 3 27 27 H 1.08998 * 109.47311 * 30.02592 * 1 2 3 28 28 H 1.09001 * 109.47077 * 150.02911 * 1 2 3 29 29 H 1.08003 * 120.37360 * 359.97208 * 3 2 1 30 30 H 1.09000 * 109.46862 * 90.00227 * 9 8 6 31 31 H 1.08996 * 109.47198 * 210.00035 * 9 8 6 32 32 H 1.08992 * 109.47135 * 330.00398 * 9 8 6 33 33 H 1.09005 * 109.46917 * 179.97438 * 12 10 8 34 34 H 1.08998 * 109.47090 * 299.99542 * 12 10 8 35 35 H 1.08997 * 109.47218 * 60.00116 * 12 10 8 36 36 H 0.97002 * 119.99224 * 179.97438 * 16 15 13 37 37 H 1.09003 * 109.47202 * 270.19877 * 22 21 4 38 38 H 1.08995 * 109.47475 * 30.19596 * 22 21 4 39 39 H 1.09004 * 109.47252 * 150.20012 * 22 21 4 40 40 H 1.07998 * 119.65536 * 179.81089 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1760 1.1752 0.0000 4 6 3.5895 1.1654 0.0006 5 7 4.2827 2.3160 0.0000 6 6 3.6419 3.4798 -0.0987 7 8 2.8860 3.8369 0.7890 8 7 3.8289 4.2626 -1.1799 9 6 4.7374 3.8337 -2.2462 10 6 3.1247 5.5426 -1.2883 11 1 2.4997 5.6891 -0.4074 12 6 2.2462 5.5368 -2.5410 13 6 4.1290 6.6619 -1.3841 14 1 5.1862 6.4420 -1.3657 15 6 3.6982 7.9671 -1.4943 16 7 2.4108 8.2350 -1.5162 17 14 4.9432 9.3546 -1.6138 18 1 5.2712 9.6039 -3.0405 19 1 4.3701 10.5868 -1.0150 20 1 6.1780 8.9762 -0.8808 21 6 4.2587 -0.0796 0.0063 22 6 5.7646 -0.1353 0.0131 23 6 3.5324 -1.2203 0.0015 24 7 2.1776 -1.1778 0.0005 25 1 1.6771 -2.0087 0.0005 26 1 -0.3634 0.0005 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8903 -0.5134 29 1 1.6364 2.1108 -0.0005 30 1 4.1825 3.2570 -2.9862 31 1 5.1769 4.7097 -2.7233 32 1 5.5287 3.2154 -1.8226 33 1 1.7219 6.4890 -2.6214 34 1 2.8709 5.3901 -3.4221 35 1 1.5198 4.7272 -2.4717 36 1 2.1078 9.1532 -1.5933 37 1 6.1324 -0.1474 -1.0129 38 1 6.1582 0.7400 0.5298 39 1 6.0925 -1.0387 0.5273 40 1 4.0370 -2.1752 0.0028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534324928.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:16 Heat of formation + Delta-G solvation = 28.739048 kcal Electronic energy + Delta-G solvation = -21806.881962 eV Core-core repulsion = 18622.802590 eV Total energy + Delta-G solvation = -3184.079372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86009 -38.82506 -35.62406 -34.74235 -33.55434 -32.59341 -31.14332 -29.32498 -28.46241 -25.98176 -25.69749 -25.07163 -23.80396 -21.98734 -20.56054 -18.34796 -18.16520 -16.96018 -16.58418 -15.93253 -15.50394 -15.06643 -14.81348 -14.43313 -13.92139 -13.42150 -13.31436 -13.24800 -12.96850 -12.51469 -12.49888 -12.34439 -12.19364 -11.92421 -11.52455 -11.40737 -11.19011 -10.94955 -10.85581 -10.68766 -10.49474 -10.09586 -10.01593 -9.74251 -9.26219 -8.98004 -8.39630 -8.22056 -7.31907 -7.11411 -5.92378 -3.98954 1.12356 1.34028 2.78015 3.36316 3.42277 3.44589 3.48770 3.88824 4.31642 4.41568 4.51168 4.70494 4.85921 5.04078 5.13625 5.19844 5.37472 5.37983 5.61173 5.68253 5.82429 5.90933 5.96562 6.16661 6.27187 6.35170 6.51080 6.68262 6.70681 6.85184 6.89858 6.97900 7.09584 7.24479 7.69152 7.74451 7.90876 8.22374 8.36882 8.42472 8.97121 9.02780 9.58060 9.74494 11.12663 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027434 B = 0.004542 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.371053 B = 6163.395161 C = 6764.276339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.148 3.852 3 C -0.238 4.238 4 C 0.304 3.696 5 N -0.609 5.609 6 C 0.660 3.340 7 O -0.604 6.604 8 N -0.590 5.590 9 C 0.097 3.903 10 C 0.263 3.737 11 H 0.061 0.939 12 C -0.142 4.142 13 C -0.519 4.519 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.159 4.159 22 C -0.087 4.087 23 C 0.110 3.890 24 N -0.593 5.593 25 H 0.414 0.586 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.028 0.972 35 H 0.007 0.993 36 H 0.261 0.739 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -24.331 -0.581 24.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.037 3.963 3 C -0.266 4.266 4 C 0.138 3.862 5 N -0.344 5.344 6 C 0.362 3.638 7 O -0.484 6.484 8 N -0.323 5.323 9 C -0.047 4.047 10 C 0.162 3.838 11 H 0.079 0.921 12 C -0.201 4.201 13 C -0.558 4.558 14 H 0.077 0.923 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.168 4.168 22 C -0.144 4.144 23 C -0.019 4.019 24 N -0.199 5.199 25 H 0.249 0.751 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.168 0.832 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.047 0.953 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.284 -23.368 -0.100 23.404 hybrid contribution -0.160 0.671 -0.166 0.709 sum -1.444 -22.698 -0.266 22.745 Atomic orbital electron populations 1.20995 0.88209 1.04487 1.04068 1.20231 0.94513 0.85523 0.96072 1.21743 0.95352 0.97913 1.11545 1.18595 0.89186 0.91346 0.87072 1.68643 1.37010 0.97814 1.30896 1.17259 0.78566 0.85214 0.82807 1.90882 1.39424 1.77936 1.40199 1.47818 1.44925 1.21865 1.17655 1.21382 0.93110 0.99807 0.90391 1.18847 0.91334 0.77744 0.95869 0.92099 1.22056 0.98458 1.01332 0.98232 1.21402 0.93135 0.90993 1.50292 0.92301 1.24895 0.95340 0.98541 0.95127 1.69893 1.13090 1.19519 1.50488 0.86500 0.81443 0.81466 0.78027 1.20695 1.21179 1.19934 1.19293 0.97363 0.90061 1.10092 1.20380 0.89238 1.02619 1.02156 1.21477 0.82228 0.99783 0.98381 1.40861 1.05916 1.08254 1.64824 0.75093 0.89556 0.88896 0.90868 0.83220 0.95224 0.91032 0.92044 0.88931 0.95308 0.97359 0.92896 0.91641 0.90045 0.92544 0.81734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.07 36.00 0.36 -0.48 16 2 C 0.15 1.52 6.80 -82.03 -0.56 0.96 16 3 C -0.24 -3.85 8.65 -39.47 -0.34 -4.19 16 4 C 0.30 5.31 6.59 -84.41 -0.56 4.75 16 5 N -0.61 -13.33 8.26 -14.59 -0.12 -13.45 16 6 C 0.66 17.15 6.64 -88.28 -0.59 16.56 16 7 O -0.60 -17.72 15.13 4.98 0.08 -17.64 16 8 N -0.59 -15.17 2.75 -181.40 -0.50 -15.67 16 9 C 0.10 2.09 9.41 59.85 0.56 2.65 16 10 C 0.26 7.53 2.64 -69.08 -0.18 7.35 16 11 H 0.06 2.00 6.89 -51.93 -0.36 1.64 16 12 C -0.14 -3.71 8.97 37.16 0.33 -3.38 16 13 C -0.52 -15.43 7.99 -34.44 -0.28 -15.70 16 14 H 0.06 1.75 7.33 -52.49 -0.38 1.36 16 15 C 0.06 1.83 5.30 -17.82 -0.09 1.73 16 16 N -0.89 -26.68 11.32 55.43 0.63 -26.06 16 17 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.16 -1.96 5.89 -104.51 -0.62 -2.58 16 22 C -0.09 -0.94 9.80 36.00 0.35 -0.59 16 23 C 0.11 0.84 10.82 -16.98 -0.18 0.65 16 24 N -0.59 -4.01 5.24 -9.31 -0.05 -4.05 16 25 H 0.41 1.03 8.77 -40.82 -0.36 0.67 16 26 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.76 8.07 -51.93 -0.42 0.35 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.15 2.96 6.35 -52.48 -0.33 2.62 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.56 7.02 -51.93 -0.36 1.19 16 32 H 0.06 1.23 7.31 -51.93 -0.38 0.85 16 33 H 0.09 2.59 6.07 -51.93 -0.32 2.28 16 34 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 35 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 39 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 40 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 331.34 15.07 4.99 4.99 Total: -1.00 -39.43 331.34 -7.57 -47.00 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.80 Total: -0.27 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -1.78 Total: 7.74 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.04 Total: -59.23 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.08 Total: -17.64 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -39.43 -7.57 -47.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534324928.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.738 kcal (2) G-P(sol) polarization free energy of solvation -39.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds