Wall clock time and date at job start Mon Mar 30 2020 01:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35228 * 119.65566 * 2 1 4 4 C 1.41348 * 119.25401 * 180.27099 * 3 2 1 5 5 N 1.34327 * 120.67146 * 179.72176 * 4 3 2 6 6 C 1.33242 * 120.00151 * 5.07672 * 5 4 3 7 7 O 1.21933 * 119.99556 * 55.46390 * 6 5 4 8 8 N 1.34774 * 119.99752 * 235.46789 * 6 5 4 9 9 C 1.46491 * 120.00266 * 359.97438 * 8 6 5 10 10 C 1.46501 * 119.99372 * 180.02562 * 8 6 5 11 11 H 1.08993 * 109.47729 * 359.97438 * 10 8 6 12 12 C 1.53008 * 109.47143 * 119.99786 * 10 8 6 13 13 C 1.50701 * 109.46810 * 239.99767 * 10 8 6 14 14 H 1.07999 * 120.00102 * 359.97438 * 13 10 8 15 15 C 1.37881 * 119.99997 * 180.02562 * 13 10 8 16 16 N 1.31511 * 119.99807 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 120.00069 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.47445 * 59.99573 * 17 15 13 19 19 H 1.48497 * 109.47531 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47471 * 299.99793 * 17 15 13 21 21 C 1.41348 * 118.65721 * 359.45142 * 4 3 2 22 22 C 1.50697 * 120.37289 * 180.29209 * 21 4 3 23 23 C 1.35227 * 119.25518 * 0.27205 * 21 4 3 24 24 N 1.35540 * 119.65451 * 179.71580 * 2 1 3 25 25 H 0.96999 * 119.27428 * 0.02562 * 24 2 1 26 26 H 1.08995 * 109.47202 * 270.28909 * 1 2 3 27 27 H 1.09003 * 109.46815 * 30.28685 * 1 2 3 28 28 H 1.08998 * 109.47319 * 150.27807 * 1 2 3 29 29 H 1.07997 * 120.37301 * 359.97438 * 3 2 1 30 30 H 1.09004 * 109.47323 * 270.00052 * 9 8 6 31 31 H 1.09004 * 109.47360 * 30.00648 * 9 8 6 32 32 H 1.09001 * 109.46968 * 150.00482 * 9 8 6 33 33 H 1.08995 * 109.46917 * 179.97438 * 12 10 8 34 34 H 1.08998 * 109.46738 * 299.99662 * 12 10 8 35 35 H 1.09003 * 109.46691 * 59.99829 * 12 10 8 36 36 H 0.97000 * 120.00020 * 180.02562 * 16 15 13 37 37 H 1.09010 * 109.46753 * 89.99919 * 22 21 4 38 38 H 1.08994 * 109.47032 * 209.99872 * 22 21 4 39 39 H 1.08995 * 109.47169 * 330.00471 * 22 21 4 40 40 H 1.07997 * 119.65796 * 180.02562 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1761 1.1752 0.0000 4 6 3.5895 1.1653 -0.0058 5 7 4.2828 2.3158 -0.0116 6 6 3.6427 3.4799 0.0902 7 8 2.8964 3.6848 1.0325 8 7 3.8199 4.4307 -0.8483 9 6 4.7168 4.1846 -1.9801 10 6 3.1165 5.7109 -0.7360 11 1 2.5007 5.7095 0.1634 12 6 4.1368 6.8481 -0.6542 13 6 2.2387 5.9094 -1.9448 14 1 2.2083 5.1575 -2.7194 15 6 1.4753 7.0515 -2.0623 16 7 1.5127 7.9674 -1.1193 17 14 0.3878 7.2979 -3.5610 18 1 -0.6028 6.1945 -3.6407 19 1 -0.3254 8.5954 -3.4472 20 1 1.2266 7.2995 -4.7864 21 6 4.2587 -0.0798 0.0004 22 6 5.7647 -0.1354 0.0011 23 6 3.5324 -1.2204 0.0061 24 7 2.1776 -1.1779 0.0058 25 1 1.6770 -2.0087 0.0096 26 1 -0.3633 0.0052 1.0276 27 1 -0.3633 0.8874 -0.5183 28 1 -0.3634 -0.8924 -0.5095 29 1 1.6366 2.1107 -0.0004 30 1 5.7250 4.5089 -1.7220 31 1 4.7259 3.1195 -2.2117 32 1 4.3670 4.7423 -2.8488 33 1 3.6134 7.8005 -0.5711 34 1 4.7716 6.7044 0.2201 35 1 4.7522 6.8494 -1.5539 36 1 0.9754 8.7707 -1.2018 37 1 6.1274 -0.1438 1.0291 38 1 6.0950 -1.0406 -0.5082 39 1 6.1608 0.7381 -0.5167 40 1 4.0370 -2.1752 0.0112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534324929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:18 Heat of formation + Delta-G solvation = 28.090737 kcal Electronic energy + Delta-G solvation = -21853.483894 eV Core-core repulsion = 18669.376409 eV Total energy + Delta-G solvation = -3184.107485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82799 -38.79583 -35.62496 -34.69113 -33.48911 -32.60536 -31.10373 -29.29037 -28.43285 -25.95109 -25.67824 -25.07549 -23.76703 -21.96636 -20.51281 -18.31257 -18.11791 -16.91139 -16.45988 -16.07661 -15.50621 -15.00995 -14.81162 -14.44362 -13.85771 -13.39844 -13.27601 -13.14015 -12.89537 -12.54355 -12.46120 -12.29803 -12.14621 -11.90540 -11.49742 -11.40218 -11.18443 -10.92497 -10.91987 -10.72850 -10.42375 -10.12532 -10.02322 -9.65899 -9.21361 -8.99361 -8.40453 -8.21643 -7.27805 -7.08185 -5.94454 -4.01549 1.13071 1.38401 2.81260 3.33921 3.38156 3.39945 3.45573 3.99718 4.36271 4.47388 4.48808 4.72795 4.91267 5.07429 5.16742 5.27360 5.35431 5.41297 5.66919 5.73797 5.84976 5.94519 6.00377 6.20215 6.26202 6.44115 6.51969 6.67012 6.75242 6.89193 6.95738 7.04876 7.14400 7.30170 7.71862 7.77057 7.90324 8.22440 8.34400 8.43821 8.98231 9.00336 9.57807 9.77762 11.10822 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019701 B = 0.005228 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.916551 B = 5354.332118 C = 6136.514229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.145 3.855 3 C -0.231 4.231 4 C 0.308 3.692 5 N -0.616 5.616 6 C 0.659 3.341 7 O -0.607 6.607 8 N -0.591 5.591 9 C 0.103 3.897 10 C 0.265 3.735 11 H 0.061 0.939 12 C -0.145 4.145 13 C -0.520 4.520 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.162 4.162 22 C -0.085 4.085 23 C 0.112 3.888 24 N -0.591 5.591 25 H 0.414 0.586 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.010 0.990 35 H 0.028 0.972 36 H 0.262 0.738 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.652 -22.403 -0.389 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.034 3.966 3 C -0.259 4.259 4 C 0.143 3.857 5 N -0.351 5.351 6 C 0.360 3.640 7 O -0.488 6.488 8 N -0.323 5.323 9 C -0.041 4.041 10 C 0.164 3.836 11 H 0.079 0.921 12 C -0.204 4.204 13 C -0.559 4.559 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.204 1.204 19 H -0.212 1.212 20 H -0.203 1.203 21 C -0.170 4.170 22 C -0.143 4.143 23 C -0.017 4.017 24 N -0.197 5.197 25 H 0.249 0.751 26 H 0.104 0.896 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.170 0.830 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.029 0.971 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.032 -21.501 0.099 21.597 hybrid contribution -1.385 0.067 -0.813 1.607 sum 0.647 -21.434 -0.714 21.456 Atomic orbital electron populations 1.20997 0.88158 1.04522 1.04087 1.20256 0.94577 0.85473 0.96250 1.21791 0.95345 0.98015 1.10708 1.18648 0.89255 0.91485 0.86269 1.68743 1.36874 0.97593 1.31931 1.17261 0.78446 0.85001 0.83280 1.90882 1.39799 1.83797 1.34294 1.47722 1.45531 1.17293 1.21796 1.21309 0.92646 0.99976 0.90170 1.18830 0.89612 0.76614 0.98577 0.92114 1.22076 0.98193 1.03304 0.96817 1.21314 1.24806 1.04240 1.05501 0.92509 1.24890 0.96755 0.95767 0.96451 1.69890 1.40580 1.09286 1.32965 0.86575 0.80585 0.77261 0.83019 1.20414 1.21217 1.20302 1.19285 0.97350 0.90080 1.10329 1.20368 0.89261 1.02520 1.02125 1.21487 0.82258 0.99792 0.98197 1.40883 1.05913 1.08318 1.64566 0.75092 0.89558 0.88770 0.90924 0.82995 0.94671 0.93038 0.91212 0.89042 0.97106 0.95313 0.92787 0.91777 0.92554 0.90051 0.81731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.07 36.01 0.36 -0.61 16 2 C 0.15 1.62 6.80 -82.03 -0.56 1.06 16 3 C -0.23 -3.95 8.53 -39.47 -0.34 -4.28 16 4 C 0.31 5.53 6.54 -84.41 -0.55 4.98 16 5 N -0.62 -13.51 8.25 -14.59 -0.12 -13.63 16 6 C 0.66 17.13 6.78 -88.28 -0.60 16.54 16 7 O -0.61 -17.72 14.91 4.98 0.07 -17.65 16 8 N -0.59 -15.27 2.75 -181.40 -0.50 -15.77 16 9 C 0.10 2.24 9.40 59.84 0.56 2.80 16 10 C 0.26 7.59 2.64 -69.08 -0.18 7.41 16 11 H 0.06 1.99 6.89 -51.93 -0.36 1.63 16 12 C -0.15 -3.91 8.97 37.16 0.33 -3.58 16 13 C -0.52 -15.09 7.99 -34.44 -0.28 -15.36 16 14 H 0.06 1.63 7.33 -52.49 -0.38 1.24 16 15 C 0.06 1.81 5.30 -17.82 -0.09 1.72 16 16 N -0.89 -26.42 11.32 55.43 0.63 -25.79 16 17 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.16 -2.05 5.89 -104.51 -0.62 -2.67 16 22 C -0.09 -0.94 9.81 36.00 0.35 -0.58 16 23 C 0.11 0.90 10.82 -16.98 -0.18 0.71 16 24 N -0.59 -4.35 5.24 -9.31 -0.05 -4.40 16 25 H 0.41 1.26 8.77 -40.82 -0.36 0.90 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.15 3.20 6.40 -52.49 -0.34 2.86 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 1.03 7.31 -51.93 -0.38 0.65 16 32 H 0.07 1.52 7.02 -51.93 -0.36 1.15 16 33 H 0.09 2.61 6.07 -51.93 -0.32 2.30 16 34 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.03 0.71 7.67 -51.93 -0.40 0.32 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.06 0.42 8.08 -51.93 -0.42 0.01 16 39 H 0.08 1.09 7.57 -51.93 -0.39 0.70 16 40 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 331.13 15.07 4.99 4.99 Total: -1.00 -38.75 331.13 -7.58 -46.33 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.80 Total: 0.96 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -1.78 Total: 8.14 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.04 Total: -59.59 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.07 Total: -17.65 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -38.75 -7.58 -46.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534324929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.419 kcal (2) G-P(sol) polarization free energy of solvation -38.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds