Wall clock time and date at job start Mon Mar 30 2020 01:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35227 * 119.65241 * 2 1 4 4 C 1.41356 * 119.25107 * 179.97438 * 3 2 1 5 5 N 1.34329 * 120.67075 * 179.97438 * 4 3 2 6 6 C 1.33237 * 119.99874 * 355.16728 * 5 4 3 7 7 O 1.21930 * 120.00535 * 64.79877 * 6 5 4 8 8 N 1.34785 * 119.99901 * 244.80529 * 6 5 4 9 9 C 1.46490 * 120.00059 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47344 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47634 * 180.02562 * 10 9 8 12 12 C 1.50692 * 109.47536 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99975 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00563 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99337 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00364 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46962 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46853 * 120.00019 * 16 14 12 19 19 H 1.48495 * 109.47079 * 239.99799 * 16 14 12 20 20 C 1.41345 * 118.65720 * 359.97438 * 4 3 2 21 21 C 1.50698 * 120.37132 * 179.97438 * 20 4 3 22 22 C 1.35230 * 119.25819 * 0.27487 * 20 4 3 23 23 N 1.35544 * 119.65235 * 179.97438 * 2 1 3 24 24 H 0.96993 * 119.27389 * 0.02562 * 23 2 1 25 25 H 1.08996 * 109.46370 * 90.00548 * 1 2 3 26 26 H 1.09001 * 109.46965 * 210.00351 * 1 2 3 27 27 H 1.08993 * 109.47117 * 330.00282 * 1 2 3 28 28 H 1.08000 * 120.37509 * 359.97438 * 3 2 1 29 29 H 0.97001 * 119.99678 * 359.97438 * 8 6 5 30 30 H 1.08999 * 109.47439 * 299.99634 * 9 8 6 31 31 H 1.09001 * 109.47247 * 59.99986 * 9 8 6 32 32 H 1.08999 * 109.46729 * 300.00283 * 10 9 8 33 33 H 1.09001 * 109.46785 * 59.99917 * 10 9 8 34 34 H 1.09000 * 109.46813 * 300.00272 * 11 10 9 35 35 H 1.09004 * 109.46879 * 59.99654 * 11 10 9 36 36 H 0.96998 * 119.99488 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47321 * 90.00132 * 21 20 4 38 38 H 1.09003 * 109.47573 * 329.99752 * 21 20 4 39 39 H 1.09000 * 109.47107 * 209.99914 * 21 20 4 40 40 H 1.07999 * 119.65922 * 179.70342 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1761 1.1752 0.0000 4 6 3.5896 1.1653 0.0006 5 7 4.2829 2.3158 0.0000 6 6 3.6420 3.4798 -0.0982 7 8 2.8865 3.8367 0.7898 8 7 3.8285 4.2627 -1.1794 9 6 3.1234 5.5421 -1.2877 10 6 3.5098 6.2280 -2.5996 11 6 2.7739 7.5646 -2.7125 12 6 3.1540 8.2398 -4.0049 13 1 3.8506 7.7631 -4.6788 14 6 2.6119 9.4657 -4.3278 15 7 1.7625 10.0455 -3.5079 16 14 3.0826 10.3024 -5.9303 17 1 4.0472 9.4490 -6.6695 18 1 1.8665 10.5068 -6.7577 19 1 3.7086 11.6166 -5.6372 20 6 4.2588 -0.0797 0.0016 21 6 5.7647 -0.1354 0.0017 22 6 3.5325 -1.2204 -0.0035 23 7 2.1777 -1.1779 0.0005 24 1 1.6770 -2.0087 0.0005 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 1.6365 2.1107 -0.0004 29 1 4.4297 3.9789 -1.8857 30 1 2.0477 5.3667 -1.2722 31 1 3.3994 6.1813 -0.4489 32 1 4.5855 6.4035 -2.6147 33 1 3.2341 5.5890 -3.4385 34 1 1.6982 7.3894 -2.6971 35 1 3.0500 8.2033 -1.8734 36 1 1.3814 10.9081 -3.7349 37 1 6.1278 -0.1479 1.0293 38 1 6.1607 0.7401 -0.5130 39 1 6.0949 -1.0386 -0.5114 40 1 4.0371 -2.1753 -0.0076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535774799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:11 Heat of formation + Delta-G solvation = 3.788525 kcal Electronic energy + Delta-G solvation = -20468.506372 eV Core-core repulsion = 17283.345064 eV Total energy + Delta-G solvation = -3185.161308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19244 -39.20914 -35.82850 -34.97313 -33.88645 -33.10889 -31.65942 -30.76871 -29.13295 -26.57732 -26.19525 -24.21820 -22.77373 -22.01205 -20.45264 -19.58978 -18.48228 -17.51958 -17.05474 -16.29632 -15.61379 -15.31873 -15.24685 -14.72377 -14.40280 -14.07834 -13.67050 -13.64474 -13.27618 -13.19404 -12.75621 -12.74055 -12.43075 -12.20259 -11.77788 -11.73397 -11.56743 -11.23081 -10.85595 -10.61209 -10.49079 -10.30975 -9.73927 -9.54238 -9.42463 -9.04752 -8.85762 -8.40277 -8.30629 -7.54876 -5.95270 -3.97728 0.76903 1.02651 2.48226 3.04113 3.34452 3.37527 3.41637 3.46088 4.02321 4.08004 4.31164 4.50384 4.60274 4.75220 4.84033 4.97430 5.09326 5.36078 5.40351 5.43901 5.57459 5.65032 5.67657 5.85750 5.95506 5.96232 6.25273 6.33442 6.38540 6.53727 6.72155 6.76626 6.82815 7.05883 7.19119 7.72654 7.86450 7.87598 8.04809 8.29106 8.46675 9.09128 9.10049 9.65927 11.16197 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.002874 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.400025 B = 9741.638530 C =10088.481463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.158 3.842 3 C -0.247 4.247 4 C 0.317 3.683 5 N -0.628 5.628 6 C 0.666 3.334 7 O -0.600 6.600 8 N -0.725 5.725 9 C 0.128 3.872 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.519 4.519 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.162 4.162 21 C -0.088 4.088 22 C 0.117 3.883 23 N -0.587 5.587 24 H 0.417 0.583 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.151 0.849 29 H 0.396 0.604 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 -30.748 6.424 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.046 3.954 3 C -0.275 4.275 4 C 0.155 3.845 5 N -0.365 5.365 6 C 0.366 3.634 7 O -0.479 6.479 8 N -0.377 5.377 9 C 0.004 3.996 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.171 4.171 21 C -0.145 4.145 22 C -0.012 4.012 23 N -0.192 5.192 24 H 0.253 0.747 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.113 0.887 28 H 0.169 0.831 29 H 0.230 0.770 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.348 -29.769 7.130 30.613 hybrid contribution -0.382 0.343 -1.143 1.253 sum -0.034 -29.426 5.986 30.029 Atomic orbital electron populations 1.21050 0.87853 1.04854 1.04346 1.20332 0.94760 0.85462 0.94798 1.21726 0.95175 0.98050 1.12522 1.18615 0.89170 0.91276 0.85437 1.68655 1.36278 0.97414 1.34154 1.17368 0.77948 0.85605 0.82454 1.90922 1.38774 1.78012 1.40229 1.45800 1.48797 1.22104 1.21000 1.21506 0.96005 0.82617 0.99512 1.21876 1.00863 0.99265 0.93761 1.19032 0.95472 0.89699 0.97186 1.21269 1.26138 1.03682 1.04670 0.92600 1.25040 0.95158 0.97374 0.96997 1.69989 1.30348 1.16655 1.36405 0.86525 0.78257 0.79449 0.83703 1.19751 1.21051 1.21021 1.19328 0.97607 0.89936 1.10195 1.20401 0.88930 1.02811 1.02361 1.21593 0.82135 1.00055 0.97446 1.40991 1.06086 1.08526 1.63556 0.74706 0.89222 0.90587 0.88672 0.83134 0.77050 0.92270 0.92170 0.92771 0.92899 0.96331 0.96260 0.93056 0.91540 0.89991 0.92256 0.81316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.07 36.01 0.36 -0.20 16 2 C 0.16 1.18 6.80 -82.02 -0.56 0.62 16 3 C -0.25 -3.14 8.65 -39.47 -0.34 -3.48 16 4 C 0.32 4.46 6.59 -84.41 -0.56 3.90 16 5 N -0.63 -11.13 9.62 -14.59 -0.14 -11.27 16 6 C 0.67 13.60 6.92 -88.27 -0.61 12.99 16 7 O -0.60 -14.16 15.81 4.98 0.08 -14.09 16 8 N -0.72 -13.84 5.56 -65.57 -0.36 -14.20 16 9 C 0.13 2.65 5.67 -4.05 -0.02 2.63 16 10 C -0.12 -2.62 5.27 -26.73 -0.14 -2.76 16 11 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 12 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 13 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -27.67 13.29 55.43 0.74 -26.94 16 16 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 C -0.16 -1.53 5.89 -104.51 -0.62 -2.15 16 21 C -0.09 -0.73 9.81 36.00 0.35 -0.37 16 22 C 0.12 0.59 10.81 -16.98 -0.18 0.40 16 23 N -0.59 -2.45 5.24 -9.30 -0.05 -2.49 16 24 H 0.42 0.04 8.77 -40.82 -0.36 -0.32 16 25 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 28 H 0.15 2.35 6.35 -52.49 -0.33 2.01 16 29 H 0.40 6.73 8.57 -40.82 -0.35 6.38 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.87 7.57 -51.93 -0.39 0.48 16 39 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 40 H 0.17 0.11 8.06 -52.49 -0.42 -0.31 16 LS Contribution 341.20 15.07 5.14 5.14 Total: -1.00 -39.58 341.20 -8.52 -48.10 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.04 Total: 0.46 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.86 Total: -1.83 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.18 Total: -54.90 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.08 Total: -14.09 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -39.58 -8.52 -48.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535774799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.887 kcal (2) G-P(sol) polarization free energy of solvation -39.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds