Wall clock time and date at job start Mon Mar 30 2020 01:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35227 * 119.65241 * 2 1 4 4 C 1.41356 * 119.25107 * 179.97438 * 3 2 1 5 5 N 1.34329 * 120.67075 * 179.97438 * 4 3 2 6 6 C 1.33237 * 119.99874 * 355.16728 * 5 4 3 7 7 O 1.21930 * 120.00535 * 64.79877 * 6 5 4 8 8 N 1.34785 * 119.99901 * 244.80529 * 6 5 4 9 9 C 1.46490 * 120.00059 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47344 * 179.97438 * 9 8 6 11 11 C 1.52995 * 109.47634 * 180.02562 * 10 9 8 12 12 C 1.50692 * 109.47536 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99975 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00563 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99337 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00364 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46962 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46853 * 120.00019 * 16 14 12 19 19 H 1.48495 * 109.47079 * 239.99799 * 16 14 12 20 20 C 1.41345 * 118.65720 * 359.97438 * 4 3 2 21 21 C 1.50698 * 120.37132 * 179.97438 * 20 4 3 22 22 C 1.35230 * 119.25819 * 0.27487 * 20 4 3 23 23 N 1.35544 * 119.65235 * 179.97438 * 2 1 3 24 24 H 0.96993 * 119.27389 * 0.02562 * 23 2 1 25 25 H 1.08996 * 109.46370 * 90.00548 * 1 2 3 26 26 H 1.09001 * 109.46965 * 210.00351 * 1 2 3 27 27 H 1.08993 * 109.47117 * 330.00282 * 1 2 3 28 28 H 1.08000 * 120.37509 * 359.97438 * 3 2 1 29 29 H 0.97001 * 119.99678 * 359.97438 * 8 6 5 30 30 H 1.08999 * 109.47439 * 299.99634 * 9 8 6 31 31 H 1.09001 * 109.47247 * 59.99986 * 9 8 6 32 32 H 1.08999 * 109.46729 * 300.00283 * 10 9 8 33 33 H 1.09001 * 109.46785 * 59.99917 * 10 9 8 34 34 H 1.09000 * 109.46813 * 300.00272 * 11 10 9 35 35 H 1.09004 * 109.46879 * 59.99654 * 11 10 9 36 36 H 0.96998 * 119.99488 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.47321 * 90.00132 * 21 20 4 38 38 H 1.09003 * 109.47573 * 329.99752 * 21 20 4 39 39 H 1.09000 * 109.47107 * 209.99914 * 21 20 4 40 40 H 1.07999 * 119.65922 * 179.70342 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1761 1.1752 0.0000 4 6 3.5896 1.1653 0.0006 5 7 4.2829 2.3158 0.0000 6 6 3.6420 3.4798 -0.0982 7 8 2.8865 3.8367 0.7898 8 7 3.8285 4.2627 -1.1794 9 6 3.1234 5.5421 -1.2877 10 6 3.5098 6.2280 -2.5996 11 6 2.7739 7.5646 -2.7125 12 6 3.1540 8.2398 -4.0049 13 1 3.8506 7.7631 -4.6788 14 6 2.6119 9.4657 -4.3278 15 7 1.7625 10.0455 -3.5079 16 14 3.0826 10.3024 -5.9303 17 1 4.0472 9.4490 -6.6695 18 1 1.8665 10.5068 -6.7577 19 1 3.7086 11.6166 -5.6372 20 6 4.2588 -0.0797 0.0016 21 6 5.7647 -0.1354 0.0017 22 6 3.5325 -1.2204 -0.0035 23 7 2.1777 -1.1779 0.0005 24 1 1.6770 -2.0087 0.0005 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5138 28 1 1.6365 2.1107 -0.0004 29 1 4.4297 3.9789 -1.8857 30 1 2.0477 5.3667 -1.2722 31 1 3.3994 6.1813 -0.4489 32 1 4.5855 6.4035 -2.6147 33 1 3.2341 5.5890 -3.4385 34 1 1.6982 7.3894 -2.6971 35 1 3.0500 8.2033 -1.8734 36 1 1.3814 10.9081 -3.7349 37 1 6.1278 -0.1479 1.0293 38 1 6.1607 0.7401 -0.5130 39 1 6.0949 -1.0386 -0.5114 40 1 4.0371 -2.1753 -0.0076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535774799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:10 Heat of formation + Delta-G solvation = -27.827887 kcal Electronic energy + Delta-G solvation = -20469.877362 eV Core-core repulsion = 17283.345064 eV Total energy + Delta-G solvation = -3186.532298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.98329 -40.55786 -37.19282 -36.30070 -35.14568 -34.66405 -33.12680 -32.10733 -29.93755 -28.47303 -26.77429 -25.55845 -24.30927 -22.89859 -22.32786 -20.99958 -19.09544 -18.72240 -18.45209 -17.85708 -17.14423 -16.65278 -16.47009 -15.95854 -15.91047 -15.63078 -14.84710 -14.30347 -14.24087 -14.18005 -13.89753 -13.79656 -13.55749 -13.26276 -13.20751 -13.12787 -12.78435 -12.59513 -12.45070 -12.40961 -12.22078 -11.80447 -11.72466 -11.47221 -11.21181 -10.58372 -10.25698 -10.17244 -9.94008 -8.50947 -8.21195 -6.33545 -0.02032 0.28286 1.39890 1.41273 1.54897 1.80710 1.92708 2.23071 2.41454 2.81761 3.11787 3.48173 3.73071 3.97963 4.05515 4.07468 4.13425 4.18025 4.48065 4.48770 4.62619 4.71483 4.77397 4.87416 4.89929 5.01026 5.02205 5.08033 5.09928 5.19517 5.44689 5.53401 5.59391 5.61517 5.65131 5.80275 5.81658 6.19728 6.27188 6.65254 6.82694 6.94847 7.35805 7.72821 8.91498 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.002874 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.400025 B = 9741.638530 C =10088.481463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.201 3.799 3 C -0.304 4.304 4 C 0.306 3.694 5 N -0.688 5.688 6 C 0.669 3.331 7 O -0.652 6.652 8 N -0.720 5.720 9 C 0.143 3.857 10 C -0.098 4.098 11 C 0.026 3.974 12 C -0.542 4.542 13 H 0.065 0.935 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.973 3.027 17 H -0.259 1.259 18 H -0.276 1.276 19 H -0.278 1.278 20 C -0.201 4.201 21 C -0.082 4.082 22 C 0.167 3.833 23 N -0.552 5.552 24 H 0.448 0.552 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.406 0.594 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.067 0.933 34 H -0.006 1.006 35 H -0.010 1.010 36 H 0.264 0.736 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.099 0.901 40 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 -35.755 4.932 36.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 C -0.332 4.332 4 C 0.152 3.848 5 N -0.432 5.432 6 C 0.370 3.630 7 O -0.536 6.536 8 N -0.374 5.374 9 C 0.018 3.982 10 C -0.136 4.136 11 C -0.011 4.011 12 C -0.580 4.580 13 H 0.084 0.916 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.797 3.203 17 H -0.183 1.183 18 H -0.202 1.202 19 H -0.204 1.204 20 C -0.209 4.209 21 C -0.139 4.139 22 C 0.036 3.964 23 N -0.157 5.157 24 H 0.290 0.710 25 H 0.124 0.876 26 H 0.137 0.863 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.241 0.759 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.013 0.987 35 H 0.009 0.991 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 0.302 -34.921 5.624 35.372 hybrid contribution -0.551 1.504 -0.603 1.712 sum -0.249 -33.417 5.021 33.793 Atomic orbital electron populations 1.21215 0.85214 1.06137 1.05723 1.20560 0.96232 0.84912 0.89771 1.21471 0.95060 0.98680 1.17955 1.19284 0.90034 0.91946 0.83498 1.68542 1.35335 0.97219 1.42061 1.17752 0.76861 0.86731 0.81624 1.90837 1.41601 1.79162 1.42012 1.45656 1.48947 1.21327 1.21432 1.21123 0.95507 0.83411 0.98170 1.21585 1.00540 0.96851 0.94625 1.18925 0.94533 0.91801 0.95867 1.21678 1.26544 1.04412 1.05370 0.91641 1.26082 0.94830 0.98123 1.01166 1.70137 1.31456 1.17246 1.38731 0.85286 0.78329 0.78173 0.78557 1.18280 1.20181 1.20417 1.19556 0.98702 0.89359 1.13304 1.20347 0.88209 1.03176 1.02180 1.22477 0.81809 1.00932 0.91204 1.41296 1.06520 1.08807 1.59027 0.70996 0.87565 0.86318 0.90426 0.87409 0.75914 0.93499 0.94293 0.91879 0.91443 0.98749 0.99119 0.92699 0.92002 0.93420 0.88221 0.74779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 10.07 71.24 0.72 -0.01 16 2 C 0.20 2.44 6.80 41.29 0.28 2.72 16 3 C -0.30 -8.06 8.65 22.34 0.19 -7.87 16 4 C 0.31 8.97 6.59 40.29 0.27 9.23 16 5 N -0.69 -26.70 9.62 -319.04 -3.07 -29.77 16 6 C 0.67 30.23 6.92 179.53 1.24 31.47 16 7 O -0.65 -34.29 15.81 -5.09 -0.08 -34.37 16 8 N -0.72 -30.04 5.56 -479.47 -2.67 -32.70 16 9 C 0.14 6.49 5.67 86.38 0.49 6.98 16 10 C -0.10 -4.50 5.27 30.59 0.16 -4.34 16 11 C 0.03 1.51 4.97 29.84 0.15 1.66 16 12 C -0.54 -32.31 9.11 25.60 0.23 -32.08 16 13 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 14 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 15 N -0.94 -59.51 13.29 21.45 0.28 -59.23 16 16 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 17 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 C -0.20 -3.39 5.89 -19.79 -0.12 -3.50 16 21 C -0.08 -1.23 9.81 71.24 0.70 -0.53 16 22 C 0.17 0.66 10.81 83.43 0.90 1.57 16 23 N -0.55 -1.29 5.24 -183.35 -0.96 -2.25 16 24 H 0.45 -3.54 8.77 -92.71 -0.81 -4.35 16 25 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.12 -0.26 8.14 -2.39 -0.02 -0.27 16 27 H 0.08 0.83 8.07 -2.39 -0.02 0.81 16 28 H 0.11 3.83 6.35 -2.91 -0.02 3.81 16 29 H 0.41 14.85 8.57 -92.71 -0.79 14.06 16 30 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 34 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 35 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 36 H 0.26 15.66 8.31 -92.71 -0.77 14.88 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 1.06 7.57 -2.39 -0.02 1.04 16 39 H 0.10 0.61 8.08 -2.39 -0.02 0.60 16 40 H 0.24 -1.90 8.06 -2.91 -0.02 -1.92 16 Total: -1.00 -98.10 341.20 0.66 -97.44 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -0.55 Total: 7.66 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.68 Total: 5.49 kcal Atomic # 7 Polarization: -117.53 SS G_CDS: -6.41 Total: -123.95 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.08 Total: -34.37 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -98.10 0.66 -97.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535774799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.612 kcal (2) G-P(sol) polarization free energy of solvation -98.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds