Wall clock time and date at job start Mon Mar 30 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35349 * 126.38199 * 2 1 4 4 C 1.41541 * 105.50220 * 180.02562 * 3 2 1 5 5 C 1.47606 * 126.52461 * 179.97438 * 4 3 2 6 6 O 1.21605 * 119.99923 * 354.84654 * 5 4 3 7 7 N 1.34778 * 120.00168 * 174.84594 * 5 4 3 8 8 C 1.46493 * 119.99902 * 4.90755 * 7 5 4 9 9 C 1.36911 * 120.00005 * 184.90809 * 7 5 4 10 10 H 1.08005 * 119.99972 * 37.55534 * 9 7 5 11 11 C 1.39012 * 120.00127 * 217.55994 * 9 7 5 12 12 N 1.31382 * 120.00067 * 9.36998 * 11 9 7 13 13 Si 1.86805 * 120.00206 * 189.37102 * 11 9 7 14 14 H 1.48503 * 109.46795 * 89.99618 * 13 11 9 15 15 H 1.48495 * 109.47119 * 209.99611 * 13 11 9 16 16 H 1.48500 * 109.46817 * 329.99829 * 13 11 9 17 17 N 1.31862 * 106.95374 * 0.24477 * 4 3 2 18 18 N 1.28469 * 110.06408 * 359.59102 * 17 4 3 19 19 C 1.46494 * 124.88464 * 180.17099 * 18 17 4 20 20 H 1.08995 * 109.47465 * 180.29121 * 19 18 17 21 21 C 1.53009 * 109.46785 * 300.28596 * 19 18 17 22 22 C 1.52998 * 109.47433 * 60.28185 * 19 18 17 23 23 C 1.53001 * 117.49809 * 128.62155 * 22 19 18 24 24 C 1.52998 * 60.00210 * 252.51815 * 23 22 19 25 25 H 1.08997 * 109.47447 * 89.97414 * 1 2 3 26 26 H 1.08998 * 109.47528 * 209.97410 * 1 2 3 27 27 H 1.09004 * 109.47272 * 329.97728 * 1 2 3 28 28 H 1.07993 * 127.24663 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47179 * 58.27892 * 8 7 5 30 30 H 1.09007 * 109.47161 * 178.28009 * 8 7 5 31 31 H 1.09003 * 109.47082 * 298.28014 * 8 7 5 32 32 H 0.97005 * 120.00205 * 180.02562 * 12 11 9 33 33 H 1.08995 * 109.46690 * 60.00050 * 21 19 18 34 34 H 1.08998 * 109.47052 * 179.97438 * 21 19 18 35 35 H 1.08994 * 109.46928 * 299.99614 * 21 19 18 36 36 H 1.08995 * 115.55319 * 274.33744 * 22 19 18 37 37 H 1.08997 * 117.49973 * 0.02562 * 23 22 19 38 38 H 1.08998 * 117.50012 * 145.02030 * 23 22 19 39 39 H 1.09004 * 117.49324 * 252.51152 * 24 23 22 40 40 H 1.09000 * 117.49938 * 107.49228 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0897 0.0000 4 6 3.6323 0.5852 -0.0006 5 6 4.8759 1.3804 -0.0014 6 8 4.8230 2.5916 -0.0961 7 7 6.0699 0.7641 0.1030 8 6 6.1409 -0.6991 0.1088 9 6 7.2165 1.5055 0.2035 10 1 7.2190 2.4212 0.7762 11 6 8.3774 1.0798 -0.4317 12 7 8.3336 0.0731 -1.2748 13 14 9.9998 1.9390 -0.0866 14 1 10.6780 1.2756 1.0560 15 1 10.8668 1.8614 -1.2896 16 1 9.7443 3.3630 0.2485 17 7 3.5420 -0.7303 -0.0063 18 7 2.3080 -1.0874 -0.0007 19 6 1.8372 -2.4747 -0.0008 20 1 0.7473 -2.4885 -0.0005 21 6 2.3559 -3.1890 -1.2506 22 6 2.3568 -3.1898 1.2479 23 6 1.3370 -3.9359 2.1105 24 6 1.9458 -2.6236 2.6086 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3634 0.8898 0.5142 28 1 2.0054 2.1258 0.0004 29 1 5.6971 -1.0881 -0.8076 30 1 7.1834 -1.0121 0.1690 31 1 5.5952 -1.0859 0.9694 32 1 9.1438 -0.2242 -1.7178 33 1 3.4457 -3.1751 -1.2509 34 1 2.0060 -4.2213 -1.2505 35 1 1.9856 -2.6796 -2.1402 36 1 3.3547 -3.6199 1.1624 37 1 0.2959 -3.9176 1.7882 38 1 1.6637 -4.8573 2.5925 39 1 2.6732 -2.6817 3.4184 40 1 1.3052 -1.7417 2.6141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000539683919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:21 Heat of formation + Delta-G solvation = 77.890776 kcal Electronic energy + Delta-G solvation = -22120.936972 eV Core-core repulsion = 18938.988979 eV Total energy + Delta-G solvation = -3181.947993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15389 -38.19752 -37.60851 -34.48386 -33.42531 -32.44339 -31.42258 -29.57323 -26.83633 -25.97489 -25.07680 -23.98523 -22.53595 -22.35792 -20.61790 -19.89814 -18.31408 -16.75843 -16.64782 -15.81277 -15.48671 -15.24553 -14.72222 -14.59837 -13.90723 -13.73399 -13.52285 -13.03166 -12.83333 -12.77881 -12.54228 -12.26275 -12.07237 -11.79534 -11.73966 -11.51911 -11.33564 -11.18249 -11.14358 -10.77374 -10.55047 -10.36194 -10.34480 -10.27902 -9.77643 -8.83219 -8.48058 -8.38767 -8.36217 -7.33057 -6.22721 -3.88256 2.36324 2.75327 2.81427 3.26829 3.30962 3.37611 3.73775 4.19007 4.22722 4.58016 4.65534 4.69154 4.78117 4.85097 5.02704 5.07630 5.11907 5.26056 5.29046 5.41757 5.49263 5.50658 5.52158 5.71794 5.78956 5.81975 5.90821 5.99263 6.09187 6.19533 6.33376 6.45769 6.88079 7.01788 7.10030 7.30268 7.46564 7.63886 8.36212 8.55079 8.74374 9.29399 9.50834 10.15609 10.82197 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022939 B = 0.005093 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.329105 B = 5496.411630 C = 6086.333165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.010 4.010 3 C -0.188 4.188 4 C 0.016 3.984 5 C 0.527 3.473 6 O -0.582 6.582 7 N -0.427 5.427 8 C 0.113 3.887 9 C -0.304 4.304 10 H 0.092 0.908 11 C 0.035 3.965 12 N -0.874 5.874 13 Si 0.926 3.074 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.268 1.268 17 N -0.253 5.253 18 N -0.287 5.287 19 C 0.182 3.818 20 H 0.100 0.900 21 C -0.159 4.159 22 C -0.163 4.163 23 C -0.171 4.171 24 C -0.167 4.167 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.152 0.848 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.028 0.972 32 H 0.267 0.733 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.399 -10.747 3.668 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C -0.217 4.217 4 C -0.145 4.145 5 C 0.314 3.686 6 O -0.465 6.465 7 N -0.145 5.145 8 C -0.031 4.031 9 C -0.432 4.432 10 H 0.109 0.891 11 C -0.169 4.169 12 N -0.512 5.512 13 Si 0.752 3.248 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.192 1.192 17 N -0.087 5.087 18 N -0.075 5.075 19 C 0.081 3.919 20 H 0.118 0.882 21 C -0.217 4.217 22 C -0.182 4.182 23 C -0.208 4.208 24 C -0.204 4.204 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.169 0.831 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.650 -11.367 3.484 18.867 hybrid contribution 0.351 0.909 0.001 0.974 sum -14.299 -10.458 3.485 18.055 Atomic orbital electron populations 1.20250 0.87838 1.02949 1.02561 1.21205 0.94669 0.87354 1.10119 1.21440 0.91309 0.98818 1.10126 1.22494 0.95816 0.89324 1.06840 1.17049 0.81847 0.86550 0.83158 1.90599 1.86306 1.13513 1.56037 1.43320 1.04402 1.05904 1.60879 1.21526 1.02252 0.80861 0.98413 1.19537 0.86131 1.07727 1.29850 0.89069 1.25495 1.00222 0.96844 0.94377 1.69930 1.29040 1.26606 1.25640 0.85942 0.81106 0.80021 0.77709 1.20356 1.20909 1.19225 1.73926 1.00144 1.15122 1.19491 1.45632 1.03339 1.05886 1.52691 1.20948 0.98436 0.76924 0.95613 0.88181 1.22095 1.03804 1.00107 0.95645 1.22573 1.00649 1.03899 0.91037 1.23018 0.97913 0.96445 1.03454 1.22873 1.03567 0.96953 0.97040 0.91013 0.92025 0.90074 0.83060 0.93719 0.89872 0.95393 0.92262 0.90340 0.90630 0.91917 0.86433 0.88750 0.88332 0.88412 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.92 36.00 0.36 -0.43 16 2 C -0.01 -0.15 6.92 -82.20 -0.57 -0.72 16 3 C -0.19 -3.67 10.73 -39.35 -0.42 -4.09 16 4 C 0.02 0.37 6.89 -82.77 -0.57 -0.20 16 5 C 0.53 14.71 7.62 -12.44 -0.09 14.62 16 6 O -0.58 -17.80 16.83 5.27 0.09 -17.71 16 7 N -0.43 -12.09 2.94 -123.36 -0.36 -12.45 16 8 C 0.11 2.84 7.97 59.84 0.48 3.32 16 9 C -0.30 -8.96 8.93 -15.00 -0.13 -9.10 16 10 H 0.09 2.75 7.75 -52.48 -0.41 2.34 16 11 C 0.03 0.97 5.03 -17.46 -0.09 0.88 16 12 N -0.87 -24.72 11.23 55.50 0.62 -24.10 16 13 Si 0.93 21.44 29.56 -169.99 -5.03 16.41 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 N -0.25 -5.12 8.29 33.41 0.28 -4.84 16 18 N -0.29 -4.56 2.92 -50.66 -0.15 -4.71 16 19 C 0.18 2.10 3.13 -67.93 -0.21 1.88 16 20 H 0.10 0.90 6.30 -51.93 -0.33 0.57 16 21 C -0.16 -1.74 9.34 37.16 0.35 -1.40 16 22 C -0.16 -1.79 5.21 -90.62 -0.47 -2.26 16 23 C -0.17 -1.41 10.18 -26.73 -0.27 -1.68 16 24 C -0.17 -1.82 10.12 -26.73 -0.27 -2.09 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.50 7.02 -51.93 -0.36 0.13 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 29 H 0.04 1.12 7.35 -51.93 -0.38 0.74 16 30 H 0.08 2.18 6.02 -51.92 -0.31 1.87 16 31 H 0.03 0.64 7.25 -51.93 -0.38 0.27 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.12 1.41 8.11 -51.93 -0.42 0.99 16 37 H 0.09 0.63 8.05 -51.93 -0.42 0.22 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 334.48 15.07 5.04 5.04 Total: -1.00 -34.46 334.48 -7.38 -41.84 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.95 Total: 1.77 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -1.92 Total: -1.25 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.39 Total: -46.10 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.09 Total: -17.71 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.46 -7.38 -41.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539683919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.728 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds