Wall clock time and date at job start Mon Mar 30 2020 02:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35349 * 126.38199 * 2 1 4 4 C 1.41541 * 105.50220 * 180.02562 * 3 2 1 5 5 C 1.47606 * 126.52461 * 179.97438 * 4 3 2 6 6 O 1.21605 * 119.99923 * 354.84654 * 5 4 3 7 7 N 1.34778 * 120.00168 * 174.84594 * 5 4 3 8 8 C 1.46493 * 119.99902 * 4.90755 * 7 5 4 9 9 C 1.36911 * 120.00005 * 184.90809 * 7 5 4 10 10 H 1.08005 * 119.99972 * 37.55534 * 9 7 5 11 11 C 1.39012 * 120.00127 * 217.55994 * 9 7 5 12 12 N 1.31382 * 120.00067 * 9.36998 * 11 9 7 13 13 Si 1.86805 * 120.00206 * 189.37102 * 11 9 7 14 14 H 1.48503 * 109.46795 * 89.99618 * 13 11 9 15 15 H 1.48495 * 109.47119 * 209.99611 * 13 11 9 16 16 H 1.48500 * 109.46817 * 329.99829 * 13 11 9 17 17 N 1.31862 * 106.95374 * 0.24477 * 4 3 2 18 18 N 1.28469 * 110.06408 * 359.59102 * 17 4 3 19 19 C 1.46494 * 124.88464 * 180.17099 * 18 17 4 20 20 H 1.08995 * 109.47465 * 180.29121 * 19 18 17 21 21 C 1.53009 * 109.46785 * 300.28596 * 19 18 17 22 22 C 1.52998 * 109.47433 * 60.28185 * 19 18 17 23 23 C 1.53001 * 117.49809 * 128.62155 * 22 19 18 24 24 C 1.52998 * 60.00210 * 252.51815 * 23 22 19 25 25 H 1.08997 * 109.47447 * 89.97414 * 1 2 3 26 26 H 1.08998 * 109.47528 * 209.97410 * 1 2 3 27 27 H 1.09004 * 109.47272 * 329.97728 * 1 2 3 28 28 H 1.07993 * 127.24663 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47179 * 58.27892 * 8 7 5 30 30 H 1.09007 * 109.47161 * 178.28009 * 8 7 5 31 31 H 1.09003 * 109.47082 * 298.28014 * 8 7 5 32 32 H 0.97005 * 120.00205 * 180.02562 * 12 11 9 33 33 H 1.08995 * 109.46690 * 60.00050 * 21 19 18 34 34 H 1.08998 * 109.47052 * 179.97438 * 21 19 18 35 35 H 1.08994 * 109.46928 * 299.99614 * 21 19 18 36 36 H 1.08995 * 115.55319 * 274.33744 * 22 19 18 37 37 H 1.08997 * 117.49973 * 0.02562 * 23 22 19 38 38 H 1.08998 * 117.50012 * 145.02030 * 23 22 19 39 39 H 1.09004 * 117.49324 * 252.51152 * 24 23 22 40 40 H 1.09000 * 117.49938 * 107.49228 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0897 0.0000 4 6 3.6323 0.5852 -0.0006 5 6 4.8759 1.3804 -0.0014 6 8 4.8230 2.5916 -0.0961 7 7 6.0699 0.7641 0.1030 8 6 6.1409 -0.6991 0.1088 9 6 7.2165 1.5055 0.2035 10 1 7.2190 2.4212 0.7762 11 6 8.3774 1.0798 -0.4317 12 7 8.3336 0.0731 -1.2748 13 14 9.9998 1.9390 -0.0866 14 1 10.6780 1.2756 1.0560 15 1 10.8668 1.8614 -1.2896 16 1 9.7443 3.3630 0.2485 17 7 3.5420 -0.7303 -0.0063 18 7 2.3080 -1.0874 -0.0007 19 6 1.8372 -2.4747 -0.0008 20 1 0.7473 -2.4885 -0.0005 21 6 2.3559 -3.1890 -1.2506 22 6 2.3568 -3.1898 1.2479 23 6 1.3370 -3.9359 2.1105 24 6 1.9458 -2.6236 2.6086 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3634 0.8898 0.5142 28 1 2.0054 2.1258 0.0004 29 1 5.6971 -1.0881 -0.8076 30 1 7.1834 -1.0121 0.1690 31 1 5.5952 -1.0859 0.9694 32 1 9.1438 -0.2242 -1.7178 33 1 3.4457 -3.1751 -1.2509 34 1 2.0060 -4.2213 -1.2505 35 1 1.9856 -2.6796 -2.1402 36 1 3.3547 -3.6199 1.1624 37 1 0.2959 -3.9176 1.7882 38 1 1.6637 -4.8573 2.5925 39 1 2.6732 -2.6817 3.4184 40 1 1.3052 -1.7417 2.6141 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000539683919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:20 Heat of formation + Delta-G solvation = 56.118650 kcal Electronic energy + Delta-G solvation = -22121.881082 eV Core-core repulsion = 18938.988979 eV Total energy + Delta-G solvation = -3182.892103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.56944 -40.09407 -38.71429 -36.67273 -34.57734 -33.85354 -33.31906 -30.88131 -28.43758 -27.60789 -26.96885 -25.29688 -23.86945 -23.25785 -21.85651 -21.30145 -19.96731 -18.85664 -17.92311 -17.40524 -17.14383 -16.56948 -16.20382 -15.92980 -15.73970 -15.42533 -14.84494 -14.49369 -13.97768 -13.79521 -13.70882 -13.61412 -13.36365 -13.31908 -13.19965 -13.12188 -12.73666 -12.67660 -12.49667 -12.41088 -12.13799 -12.11367 -11.39796 -11.34960 -11.16383 -10.94502 -10.66312 -9.91617 -9.74277 -9.50894 -8.37722 -6.14456 0.82385 1.24788 1.39114 1.45047 1.54012 1.60904 2.27297 2.58018 2.89999 3.06448 3.12819 3.30331 3.71682 3.79698 3.82829 3.98807 4.07568 4.16654 4.21680 4.43042 4.55646 4.72506 4.75926 4.78274 4.80529 4.85159 4.87176 4.93896 4.98997 5.06734 5.12830 5.14073 5.22326 5.26093 5.30596 5.39538 5.52197 6.08287 6.18816 6.48787 7.04309 7.19826 7.36119 7.99358 8.67186 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022939 B = 0.005093 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.329105 B = 5496.411630 C = 6086.333165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.020 3.980 3 C -0.219 4.219 4 C -0.030 4.030 5 C 0.514 3.486 6 O -0.626 6.626 7 N -0.444 5.444 8 C 0.137 3.863 9 C -0.347 4.347 10 H 0.070 0.930 11 C -0.001 4.001 12 N -0.896 5.896 13 Si 0.999 3.001 14 H -0.259 1.259 15 H -0.271 1.271 16 H -0.273 1.273 17 N -0.262 5.262 18 N -0.272 5.272 19 C 0.172 3.828 20 H 0.143 0.857 21 C -0.156 4.156 22 C -0.182 4.182 23 C -0.130 4.130 24 C -0.188 4.188 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.149 0.851 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.276 0.724 33 H 0.046 0.954 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.748 -13.098 3.840 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C -0.247 4.247 4 C -0.188 4.188 5 C 0.303 3.697 6 O -0.513 6.513 7 N -0.161 5.161 8 C -0.006 4.006 9 C -0.475 4.475 10 H 0.088 0.912 11 C -0.203 4.203 12 N -0.533 5.533 13 Si 0.820 3.180 14 H -0.184 1.184 15 H -0.196 1.196 16 H -0.197 1.197 17 N -0.098 5.098 18 N -0.062 5.062 19 C 0.073 3.927 20 H 0.160 0.840 21 C -0.213 4.213 22 C -0.201 4.201 23 C -0.167 4.167 24 C -0.226 4.226 25 H 0.111 0.889 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.167 0.833 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.999 -13.768 3.657 22.179 hybrid contribution 0.948 1.510 -0.063 1.784 sum -16.052 -12.258 3.594 20.514 Atomic orbital electron populations 1.20512 0.83067 1.05276 1.04628 1.21897 0.97048 0.85544 1.06005 1.21581 0.90520 1.00236 1.12386 1.21937 0.95090 0.90598 1.11225 1.17746 0.83320 0.86659 0.81962 1.90520 1.87388 1.15489 1.57864 1.43578 1.04552 1.06856 1.61122 1.21304 1.01261 0.79416 0.98608 1.19613 0.87799 1.08261 1.31877 0.91197 1.26393 1.03322 0.97273 0.93354 1.70009 1.30491 1.27212 1.25596 0.84880 0.76202 0.78437 0.78435 1.18367 1.19575 1.19732 1.73774 1.02833 1.13683 1.19538 1.46185 1.02146 1.08000 1.49835 1.21531 1.00658 0.74335 0.96129 0.83964 1.22096 1.01773 1.02246 0.95228 1.22518 1.01200 1.05434 0.90930 1.23152 0.98411 0.95197 0.99905 1.22884 1.04234 0.98857 0.96588 0.88851 0.88734 0.88785 0.83293 0.94344 0.91244 0.94000 0.91451 0.93515 0.87012 0.92139 0.88306 0.85825 0.87053 0.89683 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 9.92 71.24 0.71 -0.49 16 2 C 0.02 0.58 6.92 41.39 0.29 0.87 16 3 C -0.22 -8.68 10.73 22.42 0.24 -8.44 16 4 C -0.03 -1.45 6.89 42.43 0.29 -1.16 16 5 C 0.51 30.64 7.62 86.72 0.66 31.30 16 6 O -0.63 -41.13 16.83 -4.05 -0.07 -41.20 16 7 N -0.44 -26.60 2.94 -662.46 -1.95 -28.55 16 8 C 0.14 7.23 7.97 127.77 1.02 8.25 16 9 C -0.35 -21.61 8.93 84.09 0.75 -20.86 16 10 H 0.07 4.52 7.75 -2.91 -0.02 4.50 16 11 C 0.00 -0.07 5.03 84.95 0.43 0.36 16 12 N -0.90 -51.73 11.23 21.67 0.24 -51.48 16 13 Si 1.00 44.72 29.56 68.60 2.03 46.75 16 14 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 15 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 N -0.26 -10.83 8.29 -48.20 -0.40 -11.23 16 18 N -0.27 -8.26 2.92 -314.20 -0.92 -9.18 16 19 C 0.17 3.41 3.13 44.99 0.14 3.55 16 20 H 0.14 1.68 6.30 -2.39 -0.02 1.66 16 21 C -0.16 -3.04 9.34 71.99 0.67 -2.36 16 22 C -0.18 -3.56 5.21 -10.79 -0.06 -3.61 16 23 C -0.13 -1.55 10.18 30.59 0.31 -1.24 16 24 C -0.19 -3.70 10.12 30.60 0.31 -3.39 16 25 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 0.91 7.02 -2.39 -0.02 0.89 16 27 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.15 5.77 8.06 -2.91 -0.02 5.75 16 29 H 0.04 2.02 7.35 -2.39 -0.02 2.00 16 30 H 0.07 3.79 6.02 -2.38 -0.01 3.77 16 31 H 0.04 2.03 7.25 -2.39 -0.02 2.01 16 32 H 0.28 14.67 8.31 -92.70 -0.77 13.90 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 2.31 8.11 -2.39 -0.02 2.29 16 37 H 0.12 0.83 8.05 -2.39 -0.02 0.82 16 38 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -81.92 334.48 5.73 -76.19 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 1.03 Total: 15.95 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.76 Total: 2.76 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -3.02 Total: -100.44 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -0.07 Total: -41.20 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -81.92 5.73 -76.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539683919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.310 kcal (2) G-P(sol) polarization free energy of solvation -81.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds