Wall clock time and date at job start Mon Mar 30 2020 02:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35344 * 126.38211 * 2 1 4 4 C 1.41545 * 105.50297 * 180.22310 * 3 2 1 5 5 C 1.47610 * 126.52724 * 179.74358 * 4 3 2 6 6 O 1.21610 * 120.00007 * 355.10077 * 5 4 3 7 7 N 1.34779 * 120.00277 * 175.09987 * 5 4 3 8 8 C 1.46498 * 119.99874 * 185.45314 * 7 5 4 9 9 C 1.36911 * 119.99368 * 5.44997 * 7 5 4 10 10 H 1.07993 * 120.00696 * 34.92656 * 9 7 5 11 11 C 1.39024 * 119.99338 * 214.91928 * 9 7 5 12 12 N 1.31383 * 120.00309 * 5.20873 * 11 9 7 13 13 Si 1.86807 * 119.99783 * 185.21120 * 11 9 7 14 14 H 1.48501 * 109.46870 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.46927 * 120.00000 * 13 11 9 16 16 H 1.48505 * 109.46682 * 240.00169 * 13 11 9 17 17 N 1.31863 * 106.94996 * 359.75987 * 4 3 2 18 18 N 1.28470 * 110.06437 * 0.02562 * 17 4 3 19 19 C 1.46493 * 124.87798 * 179.97438 * 18 17 4 20 20 H 1.08999 * 109.46997 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47652 * 60.02345 * 19 18 17 22 22 C 1.53002 * 109.47207 * 300.01869 * 19 18 17 23 23 C 1.53000 * 117.50365 * 248.62294 * 22 19 18 24 24 C 1.52996 * 60.00143 * 252.51281 * 23 22 19 25 25 H 1.08998 * 109.47325 * 270.18545 * 1 2 3 26 26 H 1.09003 * 109.46894 * 30.17740 * 1 2 3 27 27 H 1.09000 * 109.48065 * 150.17922 * 1 2 3 28 28 H 1.07999 * 127.24895 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.47558 * 85.00235 * 8 7 5 30 30 H 1.09002 * 109.46634 * 204.99844 * 8 7 5 31 31 H 1.08999 * 109.47232 * 324.99755 * 8 7 5 32 32 H 0.96995 * 119.99585 * 179.97438 * 12 11 9 33 33 H 1.09006 * 109.46677 * 59.99549 * 21 19 18 34 34 H 1.08998 * 109.47675 * 179.97438 * 21 19 18 35 35 H 1.08999 * 109.47017 * 300.00108 * 21 19 18 36 36 H 1.09003 * 115.56136 * 34.31629 * 22 19 18 37 37 H 1.09002 * 117.49636 * 0.02562 * 23 22 19 38 38 H 1.08995 * 117.49940 * 145.02000 * 23 22 19 39 39 H 1.08997 * 117.49854 * 252.50980 * 24 23 22 40 40 H 1.09002 * 117.51890 * 107.47952 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0896 0.0000 4 6 3.6323 0.5852 -0.0053 5 6 4.8759 1.3803 -0.0127 6 8 4.8225 2.5918 -0.1046 7 7 6.0706 0.7638 0.0825 8 6 7.2972 1.5568 0.1956 9 6 6.1378 -0.6037 0.0736 10 1 5.4467 -1.1744 -0.5288 11 6 7.0959 -1.2574 0.8400 12 7 7.8691 -0.5710 1.6506 13 14 7.2838 -3.1120 0.7172 14 1 6.3004 -3.6456 -0.2592 15 1 8.6595 -3.4412 0.2653 16 1 7.0405 -3.7233 2.0486 17 7 3.5419 -0.7304 -0.0028 18 7 2.3079 -1.0874 0.0030 19 6 1.8372 -2.4746 0.0067 20 1 0.7473 -2.4885 0.0109 21 6 2.3611 -3.1878 1.2547 22 6 2.3513 -3.1910 -1.2437 23 6 1.3225 -3.5860 -2.3050 24 6 1.9649 -4.6602 -1.4253 25 1 -0.3634 0.0033 1.0276 26 1 -0.3633 0.8884 -0.5166 27 1 -0.3635 -0.8915 -0.5110 28 1 2.0054 2.1258 0.0004 29 1 7.4661 1.8178 1.2403 30 1 8.1413 0.9750 -0.1746 31 1 7.1967 2.4675 -0.3948 32 1 8.5373 -1.0273 2.1855 33 1 1.9948 -2.6773 2.1455 34 1 2.0105 -4.2198 1.2577 35 1 3.4510 -3.1739 1.2505 36 1 3.3384 -2.8838 -1.5894 37 1 0.2793 -3.3351 -2.1127 38 1 1.6326 -3.5385 -3.3489 39 1 2.6977 -5.3196 -1.8903 40 1 1.3447 -5.1166 -0.6538 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000539683922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:24 Heat of formation + Delta-G solvation = 57.926246 kcal Electronic energy + Delta-G solvation = -22398.070436 eV Core-core repulsion = 19215.256716 eV Total energy + Delta-G solvation = -3182.813720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.45200 -40.12520 -38.78449 -36.72032 -34.45357 -33.58207 -33.29112 -30.79922 -28.64202 -27.55089 -26.87890 -25.41092 -23.58410 -23.14462 -21.76116 -21.24534 -20.24833 -18.97241 -17.89968 -17.29685 -16.87132 -16.33966 -16.17220 -15.79901 -15.76109 -15.45582 -14.71696 -14.65207 -13.99509 -13.87343 -13.79599 -13.57555 -13.34441 -13.19224 -13.14661 -13.12482 -12.85593 -12.73335 -12.48059 -12.30692 -12.09689 -11.98971 -11.39071 -11.27072 -11.02770 -10.94623 -10.63401 -9.87300 -9.64764 -9.53815 -8.30241 -5.99806 0.89974 1.29980 1.38913 1.43616 1.54399 1.71062 2.28834 2.64492 2.84995 2.98171 3.20275 3.42641 3.78789 3.86122 3.92569 4.02277 4.06708 4.26719 4.33697 4.42016 4.58560 4.66412 4.79215 4.80776 4.82280 4.85187 4.88697 4.95104 5.00570 5.09300 5.18001 5.20053 5.20901 5.25603 5.31393 5.50033 5.69435 5.90011 6.19794 6.54851 7.06860 7.28690 7.58992 7.93963 8.76127 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.008313 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.238746 B = 3367.393673 C = 4849.810415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.014 3.986 3 C -0.222 4.222 4 C -0.023 4.023 5 C 0.518 3.482 6 O -0.637 6.637 7 N -0.443 5.443 8 C 0.134 3.866 9 C -0.322 4.322 10 H 0.113 0.887 11 C -0.007 4.007 12 N -0.906 5.906 13 Si 0.986 3.014 14 H -0.257 1.257 15 H -0.275 1.275 16 H -0.278 1.278 17 N -0.246 5.246 18 N -0.284 5.284 19 C 0.179 3.821 20 H 0.144 0.856 21 C -0.159 4.159 22 C -0.196 4.196 23 C -0.163 4.163 24 C -0.150 4.150 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.152 0.848 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.040 0.960 32 H 0.270 0.730 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.006 -11.355 -3.609 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.110 4.110 3 C -0.250 4.250 4 C -0.182 4.182 5 C 0.307 3.693 6 O -0.526 6.526 7 N -0.159 5.159 8 C -0.010 4.010 9 C -0.451 4.451 10 H 0.130 0.870 11 C -0.208 4.208 12 N -0.545 5.545 13 Si 0.809 3.191 14 H -0.180 1.180 15 H -0.201 1.201 16 H -0.204 1.204 17 N -0.081 5.081 18 N -0.073 5.073 19 C 0.079 3.921 20 H 0.161 0.839 21 C -0.217 4.217 22 C -0.216 4.216 23 C -0.200 4.200 24 C -0.187 4.187 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.170 0.830 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.129 0.871 35 H 0.059 0.941 36 H 0.094 0.906 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.218 -11.911 -3.524 20.429 hybrid contribution 0.806 0.548 0.243 1.004 sum -15.413 -11.364 -3.281 19.428 Atomic orbital electron populations 1.20488 0.83144 1.05226 1.04455 1.21946 0.97099 0.85696 1.06273 1.21581 0.90484 1.00113 1.12851 1.21792 0.94790 0.90480 1.11149 1.17688 0.83225 0.85933 0.82423 1.90535 1.87554 1.14730 1.59791 1.43693 1.04181 1.07379 1.60686 1.21124 0.86882 0.93411 0.99538 1.20292 1.18319 0.80283 1.26204 0.86955 1.26358 0.96092 1.04477 0.93860 1.70076 1.21600 1.37899 1.24957 0.84974 0.78343 0.77387 0.78392 1.18018 1.20076 1.20366 1.74096 1.01396 1.14278 1.18301 1.46269 1.02707 1.07893 1.50452 1.21377 1.00421 0.74650 0.95625 0.83901 1.22126 1.01636 1.02274 0.95632 1.22424 1.00410 1.00467 0.98255 1.23182 0.98342 1.02429 0.96020 1.23087 1.03223 0.89458 1.02966 0.89014 0.88712 0.88873 0.83017 0.94532 0.91937 0.94133 0.92058 0.92048 0.87057 0.94142 0.90576 0.86078 0.88986 0.88491 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 9.92 71.24 0.71 -0.60 16 2 C 0.01 0.45 6.92 41.39 0.29 0.74 16 3 C -0.22 -9.14 10.73 22.42 0.24 -8.90 16 4 C -0.02 -1.18 6.87 42.43 0.29 -0.89 16 5 C 0.52 30.11 7.63 86.72 0.66 30.77 16 6 O -0.64 -38.99 16.56 -4.06 -0.07 -39.06 16 7 N -0.44 -25.88 2.97 -662.45 -1.97 -27.85 16 8 C 0.13 7.36 8.71 127.77 1.11 8.47 16 9 C -0.32 -18.23 8.11 84.09 0.68 -17.55 16 10 H 0.11 6.31 5.74 -2.91 -0.02 6.30 16 11 C -0.01 -0.35 5.18 84.95 0.44 0.09 16 12 N -0.91 -51.57 11.15 21.68 0.24 -51.33 16 13 Si 0.99 42.77 29.56 68.60 2.03 44.80 16 14 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 15 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 17 N -0.25 -11.28 8.26 -48.20 -0.40 -11.68 16 18 N -0.28 -9.78 3.04 -314.22 -0.96 -10.73 16 19 C 0.18 4.28 3.17 44.99 0.14 4.43 16 20 H 0.14 2.15 6.31 -2.39 -0.02 2.13 16 21 C -0.16 -3.86 9.21 71.98 0.66 -3.20 16 22 C -0.20 -4.76 5.34 -10.79 -0.06 -4.82 16 23 C -0.16 -2.70 10.18 30.59 0.31 -2.39 16 24 C -0.15 -2.43 9.74 30.59 0.30 -2.13 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 1.09 7.03 -2.39 -0.02 1.07 16 28 H 0.15 5.93 8.06 -2.91 -0.02 5.91 16 29 H 0.04 2.08 7.73 -2.39 -0.02 2.06 16 30 H 0.06 3.37 7.29 -2.39 -0.02 3.35 16 31 H 0.04 2.12 7.50 -2.39 -0.02 2.10 16 32 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 33 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.11 1.79 7.29 -2.39 -0.02 1.77 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 2.57 7.99 -2.39 -0.02 2.55 16 37 H 0.12 1.37 8.05 -2.39 -0.02 1.35 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.12 1.34 7.61 -2.39 -0.02 1.32 16 Total: -1.00 -77.23 332.30 5.69 -71.53 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 1.03 Total: 20.31 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 5.78 Total: 4.01 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -3.08 Total: -101.58 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.07 Total: -39.06 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -77.23 5.69 -71.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539683922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.458 kcal (2) G-P(sol) polarization free energy of solvation -77.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds