Wall clock time and date at job start Mon Mar 30 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31883 * 118.95109 * 2 1 4 4 C 1.32136 * 120.96336 * 180.02562 * 3 2 1 5 5 C 1.39960 * 118.92622 * 359.97438 * 4 3 2 6 6 C 1.47833 * 120.94027 * 179.72872 * 5 4 3 7 7 O 1.21558 * 119.99630 * 125.47910 * 6 5 4 8 8 N 1.34769 * 119.99753 * 305.47803 * 6 5 4 9 9 C 1.46503 * 119.99547 * 183.83219 * 8 6 5 10 10 C 1.50702 * 109.46743 * 90.00610 * 9 8 6 11 11 H 1.08002 * 120.00226 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00040 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99955 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00248 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46961 * 59.99753 * 14 12 10 16 16 H 1.48497 * 109.47468 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46892 * 300.00325 * 14 12 10 18 18 C 1.46495 * 120.00516 * 3.83826 * 8 6 5 19 19 C 1.52996 * 109.47327 * 114.16972 * 18 8 6 20 20 C 1.52991 * 109.47291 * 234.17309 * 18 8 6 21 21 C 1.39929 * 118.12169 * 359.97438 * 5 4 3 22 22 C 1.50702 * 120.53931 * 179.97438 * 21 5 4 23 23 N 1.31850 * 118.95130 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47071 * 90.00305 * 1 2 3 25 25 H 1.09008 * 109.46925 * 209.99968 * 1 2 3 26 26 H 1.09000 * 109.46930 * 329.99889 * 1 2 3 27 27 H 1.08003 * 120.53479 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47081 * 209.99744 * 9 8 6 29 29 H 1.09000 * 109.47580 * 330.00345 * 9 8 6 30 30 H 0.96996 * 120.00010 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.46694 * 354.17114 * 18 8 6 32 32 H 1.08995 * 109.47489 * 59.99924 * 19 18 8 33 33 H 1.09008 * 109.47288 * 180.02562 * 19 18 8 34 34 H 1.09001 * 109.47587 * 299.99884 * 19 18 8 35 35 H 1.09003 * 109.47653 * 59.99483 * 20 18 8 36 36 H 1.08999 * 109.47457 * 179.97438 * 20 18 8 37 37 H 1.09003 * 109.47092 * 299.99561 * 20 18 8 38 38 H 1.08998 * 109.47458 * 94.29327 * 22 21 5 39 39 H 1.09006 * 109.47285 * 214.29013 * 22 21 5 40 40 H 1.09001 * 109.46874 * 334.28774 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2004 -0.0005 5 6 4.1855 0.0000 -0.0005 6 6 5.6638 -0.0001 -0.0071 7 8 6.2753 -0.6089 0.8492 8 7 6.3334 0.6748 -0.9623 9 6 7.7958 0.6063 -1.0189 10 6 8.2110 -0.5463 -1.8966 11 1 7.4607 -1.1661 -2.3649 12 6 9.5488 -0.8096 -2.1016 13 7 10.4625 -0.0552 -1.5309 14 14 10.0636 -2.2387 -3.1889 15 1 9.5233 -2.0389 -4.5577 16 1 11.5458 -2.3073 -3.2475 17 1 9.5306 -3.5055 -2.6264 18 6 5.5992 1.4768 -1.9439 19 6 5.9332 2.9567 -1.7457 20 6 6.0013 1.0480 -3.3563 21 6 3.4661 -1.2002 0.0006 22 6 4.1857 -2.5244 0.0001 23 7 2.1453 -1.1537 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 3.9817 2.1494 -0.0009 28 1 8.1873 1.5362 -1.4312 29 1 8.1919 0.4590 -0.0142 30 1 11.4036 -0.2407 -1.6749 31 1 4.5282 1.3248 -1.8091 32 1 7.0040 3.1087 -1.8804 33 1 5.3864 3.5536 -2.4759 34 1 5.6466 3.2623 -0.7395 35 1 5.7634 -0.0064 -3.4976 36 1 5.4547 1.6444 -4.0867 37 1 7.0723 1.1999 -3.4911 38 1 4.2928 -2.8801 1.0248 39 1 3.6125 -3.2492 -0.5781 40 1 5.1722 -2.4016 -0.4469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000539686353.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:36 Heat of formation + Delta-G solvation = 6.002215 kcal Electronic energy + Delta-G solvation = -22290.694949 eV Core-core repulsion = 19105.629634 eV Total energy + Delta-G solvation = -3185.065315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28988 -39.01669 -36.19320 -34.38379 -33.56104 -32.75970 -30.96872 -29.28762 -28.85286 -27.04752 -26.71760 -23.93525 -23.22049 -22.11560 -21.32649 -18.75809 -17.88991 -16.95961 -16.51004 -16.03417 -15.52653 -15.10541 -14.45300 -14.16923 -13.92867 -13.48772 -13.39462 -13.25278 -13.02477 -12.55079 -12.48431 -12.40896 -12.31243 -12.04717 -11.93707 -11.69952 -11.33998 -11.26242 -11.00461 -10.94658 -10.73728 -10.55491 -10.33020 -10.07828 -9.64407 -9.34484 -9.26199 -8.99945 -8.47071 -7.79456 -6.08926 -4.13040 0.68781 1.04483 3.15737 3.28390 3.33561 3.36169 3.58432 3.78733 3.90258 4.03812 4.39900 4.44998 4.76844 5.07368 5.12938 5.17658 5.25950 5.33552 5.38457 5.46106 5.55254 5.62273 5.71787 5.74844 5.92550 5.93341 6.05496 6.15260 6.19095 6.30361 6.42838 6.52241 6.88351 6.90999 7.03415 7.37649 7.43836 7.86672 8.04631 8.17203 8.26332 8.77351 8.94255 9.51278 10.99216 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.005561 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.508263 B = 5033.554617 C = 5549.890532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.321 3.679 3 N -0.527 5.527 4 C 0.179 3.821 5 C -0.227 4.227 6 C 0.558 3.442 7 O -0.526 6.526 8 N -0.580 5.580 9 C 0.247 3.753 10 C -0.523 4.523 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.893 5.893 14 Si 0.895 3.105 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.126 3.874 19 C -0.164 4.164 20 C -0.153 4.153 21 C 0.223 3.777 22 C -0.109 4.109 23 N -0.522 5.522 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.172 0.828 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.264 0.736 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.726 3.055 -0.487 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 N -0.242 5.242 4 C 0.012 3.988 5 C -0.234 4.234 6 C 0.342 3.658 7 O -0.403 6.403 8 N -0.311 5.311 9 C 0.128 3.872 10 C -0.562 4.562 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.723 3.277 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.021 3.979 19 C -0.222 4.222 20 C -0.211 4.211 21 C 0.076 3.924 22 C -0.166 4.166 23 N -0.238 5.238 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.189 0.811 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.153 2.762 -0.027 16.387 hybrid contribution 1.344 -0.656 -0.681 1.643 sum -14.808 2.107 -0.709 14.974 Atomic orbital electron populations 1.20566 0.85657 1.04102 1.03857 1.23357 0.98216 0.83501 0.89502 1.68255 1.09626 1.30065 1.16206 1.23474 0.89333 0.97834 0.88133 1.21932 0.97707 0.96096 1.07707 1.17681 0.84902 0.80506 0.82715 1.90786 1.68595 1.43498 1.37464 1.48318 1.09831 1.45514 1.27444 1.19318 0.71639 0.97426 0.98816 1.21353 0.91760 1.13811 1.29272 0.92412 1.24906 0.96419 0.96532 0.96079 1.69913 1.00909 1.38862 1.43539 0.86609 0.77417 0.82940 0.80779 1.20262 1.21203 1.20180 1.21174 0.95459 0.90975 0.90285 1.22208 1.03491 0.95253 1.01204 1.22085 1.03941 1.01040 0.94030 1.21836 0.88719 0.95519 0.86295 1.20873 1.00325 0.91106 1.04275 1.68147 1.09225 1.30144 1.16279 0.89581 0.89636 0.89605 0.81084 0.94506 0.93668 0.92635 0.91063 0.91037 0.91883 0.92905 0.92580 0.93200 0.89895 0.88983 0.90078 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.31 36.01 0.37 -0.40 16 2 C 0.32 4.44 7.64 -157.07 -1.20 3.24 16 3 N -0.53 -7.61 10.32 -10.39 -0.11 -7.72 16 4 C 0.18 2.67 8.72 -16.78 -0.15 2.53 16 5 C -0.23 -3.92 4.86 -104.69 -0.51 -4.43 16 6 C 0.56 11.51 6.18 -12.34 -0.08 11.44 16 7 O -0.53 -12.80 15.70 5.32 0.08 -12.72 16 8 N -0.58 -11.79 2.38 -168.59 -0.40 -12.19 16 9 C 0.25 6.07 4.47 -5.19 -0.02 6.05 16 10 C -0.52 -13.90 7.85 -34.44 -0.27 -14.17 16 11 H 0.06 1.53 7.52 -52.49 -0.39 1.14 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 14 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 C 0.13 2.04 2.53 -67.94 -0.17 1.87 16 19 C -0.16 -2.27 9.04 37.16 0.34 -1.93 16 20 C -0.15 -2.54 8.34 37.15 0.31 -2.23 16 21 C 0.22 3.69 6.86 -81.81 -0.56 3.13 16 22 C -0.11 -1.68 9.56 36.01 0.34 -1.34 16 23 N -0.52 -8.03 10.26 -6.67 -0.07 -8.09 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.17 2.23 6.42 -52.48 -0.34 1.89 16 28 H 0.04 0.92 6.71 -51.93 -0.35 0.57 16 29 H 0.05 1.27 7.37 -51.93 -0.38 0.89 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 31 H 0.07 1.07 4.62 -51.93 -0.24 0.83 16 32 H 0.07 1.11 6.91 -51.93 -0.36 0.75 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.05 0.68 7.29 -51.93 -0.38 0.30 16 35 H 0.06 0.99 7.96 -51.93 -0.41 0.58 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.57 6.94 -51.93 -0.36 1.21 16 38 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.63 6.75 -51.93 -0.35 1.28 16 LS Contribution 328.38 15.07 4.95 4.95 Total: -1.00 -31.15 328.38 -7.18 -38.33 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -5.66 Total: 0.79 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.69 Total: 5.38 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 0.16 Total: -52.84 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.15 -7.18 -38.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539686353.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.334 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds