Wall clock time and date at job start Mon Mar 30 2020 01:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31883 * 118.95109 * 2 1 4 4 C 1.32136 * 120.96336 * 180.02562 * 3 2 1 5 5 C 1.39960 * 118.92622 * 359.97438 * 4 3 2 6 6 C 1.47833 * 120.94027 * 179.72872 * 5 4 3 7 7 O 1.21558 * 119.99630 * 125.47910 * 6 5 4 8 8 N 1.34769 * 119.99753 * 305.47803 * 6 5 4 9 9 C 1.46503 * 119.99547 * 183.83219 * 8 6 5 10 10 C 1.50702 * 109.46743 * 90.00610 * 9 8 6 11 11 H 1.08002 * 120.00226 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00040 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99955 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00248 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46961 * 59.99753 * 14 12 10 16 16 H 1.48497 * 109.47468 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46892 * 300.00325 * 14 12 10 18 18 C 1.46495 * 120.00516 * 3.83826 * 8 6 5 19 19 C 1.52996 * 109.47327 * 114.16972 * 18 8 6 20 20 C 1.52991 * 109.47291 * 234.17309 * 18 8 6 21 21 C 1.39929 * 118.12169 * 359.97438 * 5 4 3 22 22 C 1.50702 * 120.53931 * 179.97438 * 21 5 4 23 23 N 1.31850 * 118.95130 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47071 * 90.00305 * 1 2 3 25 25 H 1.09008 * 109.46925 * 209.99968 * 1 2 3 26 26 H 1.09000 * 109.46930 * 329.99889 * 1 2 3 27 27 H 1.08003 * 120.53479 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47081 * 209.99744 * 9 8 6 29 29 H 1.09000 * 109.47580 * 330.00345 * 9 8 6 30 30 H 0.96996 * 120.00010 * 179.97438 * 13 12 10 31 31 H 1.09003 * 109.46694 * 354.17114 * 18 8 6 32 32 H 1.08995 * 109.47489 * 59.99924 * 19 18 8 33 33 H 1.09008 * 109.47288 * 180.02562 * 19 18 8 34 34 H 1.09001 * 109.47587 * 299.99884 * 19 18 8 35 35 H 1.09003 * 109.47653 * 59.99483 * 20 18 8 36 36 H 1.08999 * 109.47457 * 179.97438 * 20 18 8 37 37 H 1.09003 * 109.47092 * 299.99561 * 20 18 8 38 38 H 1.08998 * 109.47458 * 94.29327 * 22 21 5 39 39 H 1.09006 * 109.47285 * 214.29013 * 22 21 5 40 40 H 1.09001 * 109.46874 * 334.28774 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1454 1.1540 0.0000 4 6 3.4660 1.2004 -0.0005 5 6 4.1855 0.0000 -0.0005 6 6 5.6638 -0.0001 -0.0071 7 8 6.2753 -0.6089 0.8492 8 7 6.3334 0.6748 -0.9623 9 6 7.7958 0.6063 -1.0189 10 6 8.2110 -0.5463 -1.8966 11 1 7.4607 -1.1661 -2.3649 12 6 9.5488 -0.8096 -2.1016 13 7 10.4625 -0.0552 -1.5309 14 14 10.0636 -2.2387 -3.1889 15 1 9.5233 -2.0389 -4.5577 16 1 11.5458 -2.3073 -3.2475 17 1 9.5306 -3.5055 -2.6264 18 6 5.5992 1.4768 -1.9439 19 6 5.9332 2.9567 -1.7457 20 6 6.0013 1.0480 -3.3563 21 6 3.4661 -1.2002 0.0006 22 6 4.1857 -2.5244 0.0001 23 7 2.1453 -1.1537 0.0005 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 3.9817 2.1494 -0.0009 28 1 8.1873 1.5362 -1.4312 29 1 8.1919 0.4590 -0.0142 30 1 11.4036 -0.2407 -1.6749 31 1 4.5282 1.3248 -1.8091 32 1 7.0040 3.1087 -1.8804 33 1 5.3864 3.5536 -2.4759 34 1 5.6466 3.2623 -0.7395 35 1 5.7634 -0.0064 -3.4976 36 1 5.4547 1.6444 -4.0867 37 1 7.0723 1.1999 -3.4911 38 1 4.2928 -2.8801 1.0248 39 1 3.6125 -3.2492 -0.5781 40 1 5.1722 -2.4016 -0.4469 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000539686353.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:35 Heat of formation + Delta-G solvation = -13.610134 kcal Electronic energy + Delta-G solvation = -22291.545404 eV Core-core repulsion = 19105.629634 eV Total energy + Delta-G solvation = -3185.915770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.53403 -40.56467 -37.76577 -35.59591 -35.12894 -34.40079 -32.54287 -30.44287 -30.20707 -28.68549 -28.02432 -25.35829 -24.82633 -23.47105 -22.69736 -20.28599 -19.13754 -18.63630 -18.38153 -17.18723 -17.06246 -16.53845 -16.18893 -15.77581 -15.20466 -15.00068 -14.66497 -14.39002 -14.22695 -14.12314 -13.86339 -13.49803 -13.38713 -13.35472 -13.22093 -13.15552 -12.93075 -12.82362 -12.59796 -12.55808 -12.29904 -12.13235 -11.89370 -11.58995 -11.51703 -10.86339 -10.60169 -10.46003 -10.37174 -9.53540 -8.19427 -6.30990 -0.52990 -0.16951 1.37920 1.40865 1.47479 1.61316 2.11980 2.41175 2.52421 2.79596 2.90948 3.11287 3.23721 3.39543 3.82237 3.85825 4.08043 4.19456 4.26813 4.34313 4.51299 4.57732 4.74355 4.75508 4.79668 4.82020 4.89501 4.94362 4.98108 5.04584 5.07568 5.20444 5.34769 5.40378 5.48040 5.59699 5.74682 5.81716 6.08871 6.61050 6.75576 6.88473 7.18682 7.39650 8.88023 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022493 B = 0.005561 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.508263 B = 5033.554617 C = 5549.890532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.321 3.679 3 N -0.526 5.526 4 C 0.191 3.809 5 C -0.249 4.249 6 C 0.558 3.442 7 O -0.576 6.576 8 N -0.582 5.582 9 C 0.265 3.735 10 C -0.528 4.528 11 H 0.053 0.947 12 C 0.012 3.988 13 N -0.927 5.927 14 Si 0.957 3.043 15 H -0.263 1.263 16 H -0.282 1.282 17 H -0.278 1.278 18 C 0.121 3.879 19 C -0.159 4.159 20 C -0.148 4.148 21 C 0.217 3.783 22 C -0.104 4.104 23 N -0.528 5.528 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.191 0.809 28 H 0.032 0.968 29 H 0.000 1.000 30 H 0.266 0.734 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.039 0.961 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.578 3.544 -1.748 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 N -0.240 5.240 4 C 0.025 3.975 5 C -0.257 4.257 6 C 0.344 3.656 7 O -0.457 6.457 8 N -0.312 5.312 9 C 0.145 3.855 10 C -0.566 4.566 11 H 0.072 0.928 12 C -0.187 4.187 13 N -0.567 5.567 14 Si 0.782 3.218 15 H -0.188 1.188 16 H -0.207 1.207 17 H -0.203 1.203 18 C 0.018 3.982 19 C -0.216 4.216 20 C -0.206 4.206 21 C 0.071 3.929 22 C -0.161 4.161 23 N -0.244 5.244 24 H 0.125 0.875 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.208 0.792 28 H 0.050 0.950 29 H 0.019 0.981 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.053 3.272 -1.317 19.377 hybrid contribution 2.110 -0.772 -0.265 2.263 sum -16.943 2.500 -1.583 17.199 Atomic orbital electron populations 1.20784 0.82187 1.05524 1.05500 1.24350 1.00187 0.82847 0.87024 1.68430 1.08903 1.30196 1.16508 1.23734 0.89654 0.97599 0.86547 1.21593 0.95235 0.97654 1.11203 1.18146 0.86425 0.79270 0.81715 1.90744 1.70094 1.45473 1.39351 1.48294 1.08391 1.46102 1.28417 1.18762 0.74465 0.96607 0.95701 1.21562 0.91887 1.14096 1.29086 0.92827 1.25721 0.96516 0.99024 0.97431 1.70031 1.01183 1.40538 1.44946 0.85619 0.77158 0.79462 0.79519 1.18760 1.20677 1.20314 1.21493 0.95921 0.91808 0.88949 1.22185 1.02608 0.93756 1.03093 1.22029 1.02508 1.00786 0.95275 1.21953 0.89498 0.95446 0.86025 1.20806 0.99014 0.91700 1.04600 1.68270 1.08183 1.30919 1.16997 0.87549 0.88440 0.87966 0.79215 0.95036 0.98150 0.92552 0.89077 0.93205 0.88284 0.91812 0.94229 0.89349 0.92832 0.88651 0.87770 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.31 71.24 0.73 -0.45 16 2 C 0.32 7.91 7.64 138.71 1.06 8.97 16 3 N -0.53 -13.59 10.32 -186.79 -1.93 -15.52 16 4 C 0.19 5.34 8.72 85.06 0.74 6.08 16 5 C -0.25 -8.50 4.86 -19.91 -0.10 -8.60 16 6 C 0.56 23.78 6.18 86.78 0.54 24.31 16 7 O -0.58 -29.62 15.70 -3.90 -0.06 -29.68 16 8 N -0.58 -24.32 2.38 -805.58 -1.92 -26.24 16 9 C 0.27 13.73 4.47 85.63 0.38 14.12 16 10 C -0.53 -29.05 7.85 25.60 0.20 -28.85 16 11 H 0.05 2.93 7.52 -2.91 -0.02 2.91 16 12 C 0.01 0.68 5.46 84.66 0.46 1.14 16 13 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 14 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 15 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 C 0.12 3.82 2.53 44.99 0.11 3.93 16 19 C -0.16 -4.12 9.04 71.98 0.65 -3.47 16 20 C -0.15 -4.77 8.34 71.98 0.60 -4.17 16 21 C 0.22 7.04 6.86 42.92 0.29 7.34 16 22 C -0.10 -3.25 9.56 71.24 0.68 -2.57 16 23 N -0.53 -15.10 10.26 -175.02 -1.79 -16.89 16 24 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.19 4.45 6.42 -2.91 -0.02 4.43 16 28 H 0.03 1.65 6.71 -2.39 -0.02 1.64 16 29 H 0.00 0.02 7.37 -2.39 -0.02 0.01 16 30 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.09 2.55 4.62 -2.39 -0.01 2.54 16 32 H 0.05 1.52 6.91 -2.39 -0.02 1.50 16 33 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.06 1.51 7.29 -2.39 -0.02 1.49 16 35 H 0.04 1.38 7.96 -2.39 -0.02 1.36 16 36 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 2.04 6.94 -2.39 -0.02 2.02 16 38 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 40 H 0.06 2.28 6.75 -2.39 -0.02 2.26 16 Total: -1.00 -70.36 328.38 4.01 -66.35 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.04 Total: 12.63 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 6.36 Total: 17.78 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -5.36 Total: -113.07 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.06 Total: -29.68 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -70.36 4.01 -66.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539686353.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.738 kcal (2) G-P(sol) polarization free energy of solvation -70.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds