Wall clock time and date at job start Mon Mar 30 2020 01:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35451 * 116.99927 * 2 1 4 4 N 1.32324 * 119.16019 * 0.02562 * 3 2 1 5 5 C 1.32507 * 120.95110 * 179.72289 * 4 3 2 6 6 C 1.50703 * 120.36538 * 179.97438 * 5 4 3 7 7 C 1.38115 * 119.27243 * 359.97438 * 5 4 3 8 8 C 1.39637 * 118.45041 * 0.02562 * 7 5 4 9 9 N 1.38530 * 120.49392 * 180.02562 * 8 7 5 10 10 C 1.46844 * 111.00371 * 304.21094 * 9 8 7 11 11 C 1.53041 * 109.52357 * 174.16241 * 10 9 8 12 12 C 1.53114 * 109.27848 * 59.18039 * 11 10 9 13 13 C 1.50700 * 109.52021 * 182.44122 * 12 11 10 14 14 H 1.08001 * 120.00079 * 119.68629 * 13 12 11 15 15 C 1.37877 * 119.99875 * 299.67423 * 13 12 11 16 16 N 1.31513 * 120.00309 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99969 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47068 * 60.00681 * 17 15 13 19 19 H 1.48501 * 109.47321 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47332 * 300.00793 * 17 15 13 21 21 C 1.53123 * 109.15821 * 302.34296 * 12 11 10 22 22 C 1.46854 * 110.99849 * 179.97438 * 9 8 7 23 23 N 1.32269 * 119.15105 * 179.73079 * 3 2 1 24 24 H 1.09002 * 109.46594 * 59.99860 * 1 2 3 25 25 H 1.08994 * 109.47218 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47120 * 300.00626 * 1 2 3 27 27 H 1.08994 * 109.47166 * 89.99135 * 6 5 4 28 28 H 1.08996 * 109.47321 * 210.00042 * 6 5 4 29 29 H 1.09002 * 109.46578 * 329.99313 * 6 5 4 30 30 H 1.07992 * 120.77705 * 180.02562 * 7 5 4 31 31 H 1.09005 * 109.45714 * 294.17624 * 10 9 8 32 32 H 1.09002 * 109.46370 * 54.14356 * 10 9 8 33 33 H 1.08997 * 109.50004 * 299.23338 * 11 10 9 34 34 H 1.08998 * 109.49949 * 179.11799 * 11 10 9 35 35 H 1.09003 * 109.52608 * 62.25078 * 12 11 10 36 36 H 0.96993 * 120.00462 * 179.97438 * 16 15 13 37 37 H 1.08992 * 109.50478 * 297.71714 * 21 12 11 38 38 H 1.09004 * 109.50333 * 177.59747 * 21 12 11 39 39 H 1.08997 * 109.46338 * 305.86064 * 22 9 8 40 40 H 1.09000 * 109.45764 * 65.82358 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3071 2.3060 0.0005 5 6 1.8714 3.5048 0.0060 6 6 1.0194 4.7479 0.0060 7 6 3.2491 3.6027 0.0118 8 6 3.9997 2.4252 0.0111 9 7 5.3841 2.4740 0.0173 10 6 5.8879 3.2667 -1.1115 11 6 7.4058 3.4206 -0.9914 12 6 8.0556 2.0342 -0.9868 13 6 9.5452 2.1768 -0.8085 14 1 10.0326 1.7267 0.0437 15 6 10.2858 2.8819 -1.7334 16 7 9.6922 3.4303 -2.7709 17 14 12.1321 3.0594 -1.5120 18 1 12.7608 1.7140 -1.4995 19 1 12.6908 3.8568 -2.6333 20 1 12.4127 3.7487 -0.2269 21 6 7.4783 1.2124 0.1691 22 6 5.9583 1.1224 0.0159 23 7 3.3657 1.2566 0.0054 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.8098 5.0447 1.0335 28 1 1.5501 5.5521 -0.5035 29 1 0.0821 4.5458 -0.5123 30 1 3.7345 4.5674 0.0168 31 1 5.6469 2.7609 -2.0465 32 1 5.4210 4.2516 -1.1007 33 1 7.6466 3.9385 -0.0631 34 1 7.7813 3.9957 -1.8377 35 1 7.8473 1.5311 -1.9311 36 1 10.2132 3.9266 -3.4214 37 1 7.7203 1.6955 1.1156 38 1 7.9057 0.2098 0.1518 39 1 5.5426 0.5503 0.8453 40 1 5.7170 0.6264 -0.9243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545469936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:55 Heat of formation + Delta-G solvation = 17.674323 kcal Electronic energy + Delta-G solvation = -21639.049002 eV Core-core repulsion = 18454.489828 eV Total energy + Delta-G solvation = -3184.559174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.24022 -39.01641 -37.77364 -34.78003 -33.45393 -31.89443 -30.40863 -29.99473 -28.53620 -27.33441 -25.86976 -23.49354 -22.91389 -21.91058 -21.17698 -18.85514 -18.25375 -17.53708 -16.56265 -16.35482 -15.97379 -15.15346 -14.75990 -14.57325 -14.51423 -14.02574 -13.60689 -13.36617 -13.06410 -12.73984 -12.60187 -12.57670 -12.27933 -12.03693 -11.59166 -11.33303 -11.05797 -10.93980 -10.84514 -10.61444 -10.46282 -10.30194 -10.12769 -9.56189 -9.17855 -9.12086 -8.98480 -8.78463 -8.34868 -8.07665 -6.01890 -4.07064 1.18481 1.23202 2.58848 3.31547 3.36133 3.39167 3.72262 3.96212 4.03317 4.42616 4.74835 4.99098 5.10888 5.15746 5.21344 5.27689 5.29443 5.39224 5.45640 5.56444 5.63692 5.76130 5.79361 5.94813 6.05102 6.13407 6.25448 6.30734 6.52633 6.69105 6.76606 6.95557 7.04682 7.20348 7.30886 7.41997 7.48611 7.70741 7.95100 8.04920 8.29395 8.41910 8.96095 9.57797 11.04714 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033447 B = 0.003902 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.953194 B = 7173.273901 C = 7735.819310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.293 6.293 3 C 0.523 3.477 4 N -0.599 5.599 5 C 0.217 3.783 6 C -0.102 4.102 7 C -0.283 4.283 8 C 0.404 3.596 9 N -0.463 5.463 10 C 0.063 3.937 11 C -0.107 4.107 12 C 0.045 3.955 13 C -0.511 4.511 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.111 4.111 22 C 0.068 3.932 23 N -0.567 5.567 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.025 0.975 36 H 0.261 0.739 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.490 0.845 4.171 18.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.194 6.194 3 C 0.218 3.782 4 N -0.334 5.334 5 C 0.075 3.925 6 C -0.159 4.159 7 C -0.309 4.309 8 C 0.163 3.837 9 N -0.179 5.179 10 C -0.062 4.062 11 C -0.145 4.145 12 C 0.026 3.974 13 C -0.549 4.549 14 H 0.074 0.926 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.149 4.149 22 C -0.058 4.058 23 N -0.301 5.301 24 H 0.079 0.921 25 H 0.117 0.883 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.167 0.833 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.580 0.008 4.410 18.125 hybrid contribution 0.995 0.596 -0.403 1.228 sum -16.585 0.605 4.008 17.073 Atomic orbital electron populations 1.22906 0.76167 1.03061 1.02631 1.86074 1.22965 1.23107 1.87285 1.20358 0.85531 0.84469 0.87831 1.67836 1.41094 0.98562 1.25861 1.21106 0.91331 0.92327 0.87763 1.20744 0.99353 0.92337 1.03511 1.22006 0.94534 0.99937 1.14458 1.20112 0.90876 0.87203 0.85505 1.58947 0.99630 1.17813 1.41529 1.22579 1.00125 0.95458 0.88006 1.21786 0.87691 1.01917 1.03093 1.18734 0.94583 0.91130 0.92904 1.21142 0.92063 1.33141 1.08555 0.92627 1.24963 0.98355 0.95525 0.95104 1.69835 1.35537 1.35522 1.12328 0.86668 0.85655 0.78136 0.77590 1.20323 1.21359 1.20288 1.21791 0.91039 1.00716 1.01365 1.22136 0.96462 0.85709 1.01514 1.67520 1.07985 1.29423 1.25125 0.92101 0.88252 0.92145 0.89779 0.89957 0.90228 0.83347 0.93954 0.91206 0.93243 0.87972 0.95704 0.92942 0.92353 0.92280 0.90804 0.93466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.48 10.36 101.05 1.05 1.53 16 2 O -0.29 -4.41 10.55 -18.05 -0.19 -4.60 16 3 C 0.52 8.74 8.49 -91.29 -0.77 7.96 16 4 N -0.60 -8.87 9.16 -11.03 -0.10 -8.97 16 5 C 0.22 2.88 6.81 -82.34 -0.56 2.32 16 6 C -0.10 -0.88 10.21 36.01 0.37 -0.51 16 7 C -0.28 -4.15 8.94 -39.10 -0.35 -4.50 16 8 C 0.40 7.11 6.41 -154.82 -0.99 6.12 16 9 N -0.46 -8.64 4.68 -173.07 -0.81 -9.45 16 10 C 0.06 1.18 5.25 -3.83 -0.02 1.16 16 11 C -0.11 -2.39 5.12 -26.65 -0.14 -2.52 16 12 C 0.04 1.09 2.16 -91.65 -0.20 0.89 16 13 C -0.51 -13.70 8.56 -34.44 -0.29 -13.99 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 16 N -0.89 -24.72 11.37 55.43 0.63 -24.09 16 17 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.11 -2.33 5.32 -26.65 -0.14 -2.47 16 22 C 0.07 1.31 4.67 -3.84 -0.02 1.29 16 23 N -0.57 -10.46 8.87 -13.96 -0.12 -10.58 16 24 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 25 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.15 1.89 7.22 -52.49 -0.38 1.51 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.14 6.74 -51.93 -0.35 0.79 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 2.53 6.17 -51.93 -0.32 2.21 16 35 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.39 7.72 -51.93 -0.40 0.99 16 40 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 LS Contribution 324.54 15.07 4.89 4.89 Total: -1.00 -29.80 324.54 -8.95 -38.75 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.06 Total: -0.68 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.17 Total: -1.17 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.40 Total: -53.10 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.19 Total: -4.60 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.80 -8.95 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545469936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.425 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds