Wall clock time and date at job start Mon Mar 30 2020 01:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35451 * 116.99927 * 2 1 4 4 N 1.32324 * 119.16019 * 0.02562 * 3 2 1 5 5 C 1.32507 * 120.95110 * 179.72289 * 4 3 2 6 6 C 1.50703 * 120.36538 * 179.97438 * 5 4 3 7 7 C 1.38115 * 119.27243 * 359.97438 * 5 4 3 8 8 C 1.39637 * 118.45041 * 0.02562 * 7 5 4 9 9 N 1.38530 * 120.49392 * 180.02562 * 8 7 5 10 10 C 1.46844 * 111.00371 * 304.21094 * 9 8 7 11 11 C 1.53041 * 109.52357 * 174.16241 * 10 9 8 12 12 C 1.53114 * 109.27848 * 59.18039 * 11 10 9 13 13 C 1.50700 * 109.52021 * 182.44122 * 12 11 10 14 14 H 1.08001 * 120.00079 * 119.68629 * 13 12 11 15 15 C 1.37877 * 119.99875 * 299.67423 * 13 12 11 16 16 N 1.31513 * 120.00309 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99969 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47068 * 60.00681 * 17 15 13 19 19 H 1.48501 * 109.47321 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47332 * 300.00793 * 17 15 13 21 21 C 1.53123 * 109.15821 * 302.34296 * 12 11 10 22 22 C 1.46854 * 110.99849 * 179.97438 * 9 8 7 23 23 N 1.32269 * 119.15105 * 179.73079 * 3 2 1 24 24 H 1.09002 * 109.46594 * 59.99860 * 1 2 3 25 25 H 1.08994 * 109.47218 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47120 * 300.00626 * 1 2 3 27 27 H 1.08994 * 109.47166 * 89.99135 * 6 5 4 28 28 H 1.08996 * 109.47321 * 210.00042 * 6 5 4 29 29 H 1.09002 * 109.46578 * 329.99313 * 6 5 4 30 30 H 1.07992 * 120.77705 * 180.02562 * 7 5 4 31 31 H 1.09005 * 109.45714 * 294.17624 * 10 9 8 32 32 H 1.09002 * 109.46370 * 54.14356 * 10 9 8 33 33 H 1.08997 * 109.50004 * 299.23338 * 11 10 9 34 34 H 1.08998 * 109.49949 * 179.11799 * 11 10 9 35 35 H 1.09003 * 109.52608 * 62.25078 * 12 11 10 36 36 H 0.96993 * 120.00462 * 179.97438 * 16 15 13 37 37 H 1.08992 * 109.50478 * 297.71714 * 21 12 11 38 38 H 1.09004 * 109.50333 * 177.59747 * 21 12 11 39 39 H 1.08997 * 109.46338 * 305.86064 * 22 9 8 40 40 H 1.09000 * 109.45764 * 65.82358 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3071 2.3060 0.0005 5 6 1.8714 3.5048 0.0060 6 6 1.0194 4.7479 0.0060 7 6 3.2491 3.6027 0.0118 8 6 3.9997 2.4252 0.0111 9 7 5.3841 2.4740 0.0173 10 6 5.8879 3.2667 -1.1115 11 6 7.4058 3.4206 -0.9914 12 6 8.0556 2.0342 -0.9868 13 6 9.5452 2.1768 -0.8085 14 1 10.0326 1.7267 0.0437 15 6 10.2858 2.8819 -1.7334 16 7 9.6922 3.4303 -2.7709 17 14 12.1321 3.0594 -1.5120 18 1 12.7608 1.7140 -1.4995 19 1 12.6908 3.8568 -2.6333 20 1 12.4127 3.7487 -0.2269 21 6 7.4783 1.2124 0.1691 22 6 5.9583 1.1224 0.0159 23 7 3.3657 1.2566 0.0054 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.8098 5.0447 1.0335 28 1 1.5501 5.5521 -0.5035 29 1 0.0821 4.5458 -0.5123 30 1 3.7345 4.5674 0.0168 31 1 5.6469 2.7609 -2.0465 32 1 5.4210 4.2516 -1.1007 33 1 7.6466 3.9385 -0.0631 34 1 7.7813 3.9957 -1.8377 35 1 7.8473 1.5311 -1.9311 36 1 10.2132 3.9266 -3.4214 37 1 7.7203 1.6955 1.1156 38 1 7.9057 0.2098 0.1518 39 1 5.5426 0.5503 0.8453 40 1 5.7170 0.6264 -0.9243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545469936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:55 Heat of formation + Delta-G solvation = -2.390614 kcal Electronic energy + Delta-G solvation = -21639.919083 eV Core-core repulsion = 18454.489828 eV Total energy + Delta-G solvation = -3185.429255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44992 -40.35812 -39.02604 -36.32922 -34.86607 -33.56104 -31.77084 -31.63498 -29.55046 -28.25649 -27.66834 -24.81511 -24.46984 -23.41562 -22.56925 -20.57372 -19.42976 -18.76447 -18.45048 -17.49888 -17.39557 -16.52695 -16.33699 -15.95119 -15.67103 -15.26885 -15.01781 -14.73049 -14.45828 -14.33363 -14.02086 -13.73861 -13.24688 -13.16157 -13.01094 -12.81602 -12.80510 -12.40701 -12.21999 -12.13653 -12.06062 -11.98379 -11.72197 -11.36523 -10.91201 -10.75580 -10.40525 -10.33505 -10.28412 -9.42169 -8.07759 -6.20377 -0.01452 0.06440 1.44854 1.45224 1.52071 1.52950 2.42697 2.46058 2.74057 2.99625 3.19909 3.64015 3.79121 4.07158 4.12399 4.27548 4.28083 4.31051 4.40079 4.41203 4.49207 4.59856 4.68674 4.69769 4.79007 4.81061 4.86354 4.92076 4.99188 5.13425 5.18162 5.29952 5.46510 5.48513 5.65127 5.85005 5.96892 6.07606 6.12089 6.24497 6.38953 6.88948 7.09358 7.47431 8.97262 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033447 B = 0.003902 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.953194 B = 7173.273901 C = 7735.819310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.312 6.312 3 C 0.509 3.491 4 N -0.593 5.593 5 C 0.220 3.780 6 C -0.098 4.098 7 C -0.282 4.282 8 C 0.381 3.619 9 N -0.468 5.468 10 C 0.075 3.925 11 C -0.095 4.095 12 C 0.041 3.959 13 C -0.533 4.533 14 H 0.052 0.948 15 C 0.016 3.984 16 N -0.916 5.916 17 Si 0.952 3.048 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.271 1.271 21 C -0.101 4.101 22 C 0.082 3.918 23 N -0.599 5.599 24 H 0.064 0.936 25 H 0.129 0.871 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.171 0.829 31 H 0.028 0.972 32 H 0.101 0.899 33 H 0.044 0.956 34 H 0.077 0.923 35 H -0.009 1.009 36 H 0.261 0.739 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.044 2.043 4.933 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.214 6.214 3 C 0.205 3.795 4 N -0.327 5.327 5 C 0.077 3.923 6 C -0.155 4.155 7 C -0.307 4.307 8 C 0.142 3.858 9 N -0.184 5.184 10 C -0.050 4.050 11 C -0.134 4.134 12 C 0.023 3.977 13 C -0.571 4.571 14 H 0.070 0.930 15 C -0.183 4.183 16 N -0.555 5.555 17 Si 0.778 3.222 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.139 4.139 22 C -0.045 4.045 23 N -0.333 5.333 24 H 0.082 0.918 25 H 0.147 0.853 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.107 0.893 30 H 0.188 0.812 31 H 0.047 0.953 32 H 0.119 0.881 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.010 0.990 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -19.164 1.196 5.183 19.888 hybrid contribution 1.331 0.191 -0.653 1.495 sum -17.832 1.388 4.530 18.451 Atomic orbital electron populations 1.23229 0.73685 1.05229 1.02990 1.86060 1.25447 1.22788 1.87067 1.20580 0.85327 0.85503 0.88127 1.67993 1.40640 0.98702 1.25367 1.21930 0.91540 0.93298 0.85536 1.20908 0.99072 0.90389 1.05105 1.22283 0.95083 0.99702 1.13647 1.20218 0.90260 0.88262 0.87082 1.58950 1.00858 1.16972 1.41608 1.22362 0.97766 0.97026 0.87798 1.21501 0.90180 1.00095 1.01577 1.18705 0.94063 0.92503 0.92461 1.21486 0.93620 1.33378 1.08664 0.92976 1.25685 1.02480 0.95233 0.94853 1.69965 1.36906 1.35829 1.12820 0.85701 0.80655 0.78100 0.77707 1.20040 1.20936 1.19619 1.21632 0.92252 1.00139 0.99835 1.21890 0.95104 0.86631 1.00886 1.67379 1.09352 1.30379 1.26202 0.91760 0.85280 0.91631 0.87866 0.87830 0.89295 0.81170 0.95341 0.88100 0.93714 0.90485 0.99048 0.92938 0.92360 0.92158 0.90264 0.94953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.36 113.37 1.17 1.96 16 2 O -0.31 -9.16 10.55 -87.49 -0.92 -10.09 16 3 C 0.51 16.62 8.49 180.58 1.53 18.15 16 4 N -0.59 -16.39 9.16 -301.76 -2.76 -19.15 16 5 C 0.22 5.21 6.81 42.43 0.29 5.50 16 6 C -0.10 -1.29 10.21 71.24 0.73 -0.56 16 7 C -0.28 -7.61 8.94 22.58 0.20 -7.40 16 8 C 0.38 13.11 6.41 133.18 0.85 13.97 16 9 N -0.47 -17.33 4.68 -701.46 -3.28 -20.62 16 10 C 0.08 2.83 5.25 86.33 0.45 3.28 16 11 C -0.10 -4.35 5.12 30.65 0.16 -4.19 16 12 C 0.04 2.06 2.16 -11.46 -0.02 2.04 16 13 C -0.53 -29.22 8.56 25.60 0.22 -29.01 16 14 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 15 C 0.02 0.89 5.31 84.65 0.45 1.34 16 16 N -0.92 -51.66 11.37 21.45 0.24 -51.42 16 17 Si 0.95 43.14 29.54 68.60 2.03 45.17 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 C -0.10 -4.32 5.32 30.64 0.16 -4.15 16 22 C 0.08 3.21 4.67 86.32 0.40 3.61 16 23 N -0.60 -22.01 8.87 -311.07 -2.76 -24.76 16 24 H 0.06 1.11 8.09 -2.39 -0.02 1.10 16 25 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.11 8.09 -2.39 -0.02 1.10 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.10 0.98 8.09 -2.39 -0.02 0.96 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.17 3.75 7.22 -2.91 -0.02 3.72 16 31 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.10 3.14 6.74 -2.39 -0.02 3.12 16 33 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.08 3.92 6.17 -2.39 -0.01 3.90 16 35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 37 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 39 H 0.08 3.02 7.72 -2.39 -0.02 3.00 16 40 H 0.03 1.35 8.12 -2.39 -0.02 1.33 16 Total: -1.00 -65.65 324.54 0.17 -65.49 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 1.02 Total: 10.84 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 6.60 Total: 4.54 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -8.56 Total: -115.95 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.92 Total: -10.09 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -65.65 0.17 -65.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545469936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.094 kcal (2) G-P(sol) polarization free energy of solvation -65.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds