Wall clock time and date at job start Mon Mar 30 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30180 * 126.80212 * 2 1 4 4 O 1.20915 * 111.60353 * 180.02562 * 3 2 1 5 5 C 1.34043 * 111.57123 * 359.76053 * 4 3 2 6 6 C 1.50701 * 126.78220 * 180.28606 * 5 4 3 7 7 C 1.35452 * 106.44012 * 0.38228 * 5 4 3 8 8 C 1.50705 * 128.00133 * 179.90762 * 7 5 4 9 9 C 1.52995 * 109.47244 * 269.67732 * 8 7 5 10 10 N 1.46906 * 109.46978 * 180.02562 * 9 8 7 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.46769 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47069 * 304.99474 * 12 11 10 14 14 C 1.47199 * 109.47256 * 64.99890 * 12 11 10 15 15 N 7.53566 * 66.72559 * 194.28291 * 2 1 3 16 16 C 1.53006 * 109.46846 * 185.00040 * 12 11 10 17 17 C 1.50699 * 109.46678 * 174.99845 * 16 12 11 18 18 H 1.07994 * 120.00629 * 0.02562 * 17 16 12 19 19 C 1.37887 * 119.99470 * 179.97438 * 17 16 12 20 20 N 1.31510 * 120.00112 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99747 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47464 * 89.99846 * 21 19 17 23 23 H 1.48504 * 109.47105 * 209.99902 * 21 19 17 24 24 H 1.48499 * 109.47186 * 329.99318 * 21 19 17 25 25 H 1.09003 * 109.46660 * 269.97422 * 1 2 3 26 26 H 1.09002 * 109.46861 * 29.96864 * 1 2 3 27 27 H 1.08995 * 109.47246 * 149.97577 * 1 2 3 28 28 H 1.09000 * 109.47263 * 270.11658 * 6 5 4 29 29 H 1.09008 * 109.46569 * 30.11105 * 6 5 4 30 30 H 1.08998 * 109.46951 * 150.11241 * 6 5 4 31 31 H 1.09005 * 109.46616 * 149.68288 * 8 7 5 32 32 H 1.09002 * 109.47100 * 29.68426 * 8 7 5 33 33 H 1.08995 * 109.46859 * 60.00696 * 9 8 7 34 34 H 1.09002 * 109.47639 * 300.00364 * 9 8 7 35 35 H 1.00898 * 110.99995 * 303.95410 * 10 9 8 36 36 H 1.09002 * 109.47401 * 59.99808 * 11 10 9 37 37 H 1.09001 * 109.46874 * 299.99821 * 11 10 9 38 38 H 1.09004 * 109.46746 * 294.99703 * 16 12 11 39 39 H 1.08998 * 109.47205 * 54.99872 * 16 12 11 40 40 H 0.96996 * 120.00103 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 4.9022 -1.3696 0.0113 7 6 2.3539 -1.1320 -0.0006 8 6 1.9591 -2.5864 -0.0001 9 6 1.8242 -3.0787 -1.4424 10 7 1.4388 -4.4963 -1.4419 11 6 1.3002 -5.0046 -2.8132 12 6 0.8983 -6.4803 -2.7718 13 1 1.6194 -7.0366 -2.1729 14 6 -0.4400 -6.6077 -2.1722 15 7 -1.4706 -6.7085 -1.7078 16 6 0.8753 -7.0426 -4.1946 17 6 0.6000 -8.5234 -4.1450 18 1 0.4555 -9.0143 -3.1940 19 6 0.5317 -9.2514 -5.3140 20 7 0.7062 -8.6534 -6.4722 21 14 0.1898 -11.0868 -5.2526 22 1 -1.2755 -11.3198 -5.3138 23 1 0.8453 -11.7514 -6.4076 24 1 0.7280 -11.6485 -3.9877 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 5.2202 -1.5550 -1.0147 29 1 5.6637 -0.7850 0.5277 30 1 4.7627 -2.3202 0.5260 31 1 1.0054 -2.7037 0.5145 32 1 2.7232 -3.1701 0.5132 33 1 2.7779 -2.9613 -1.9570 34 1 1.0601 -2.4949 -1.9557 35 1 2.0982 -5.0501 -0.9162 36 1 2.2505 -4.9010 -3.3369 37 1 0.5329 -4.4339 -3.3364 38 1 0.0927 -6.5466 -4.7687 39 1 1.8406 -6.8682 -4.6699 40 1 0.6578 -9.1655 -7.2946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554551428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:49 Heat of formation + Delta-G solvation = 58.838683 kcal Electronic energy + Delta-G solvation = -20374.818964 eV Core-core repulsion = 17192.044810 eV Total energy + Delta-G solvation = -3182.774154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -45.10900 -37.68509 -36.30264 -34.91044 -33.94395 -33.46877 -31.88591 -29.89432 -28.84914 -27.69141 -26.24637 -23.62734 -22.39418 -21.82142 -21.28044 -20.29151 -17.86242 -17.15634 -17.07962 -16.42686 -15.46651 -15.10207 -14.70145 -14.51571 -14.20246 -13.85387 -13.71449 -13.42589 -13.28168 -13.02998 -12.93337 -12.64498 -12.52604 -12.27708 -12.17177 -11.96663 -11.72878 -11.43221 -11.25992 -11.08525 -10.91831 -10.72418 -10.55654 -10.26449 -10.00765 -9.59222 -9.33985 -9.22011 -8.48648 -8.38330 -6.11947 -4.15254 1.24837 1.99131 2.89806 3.28293 3.35029 3.37941 3.72211 3.81853 3.94516 4.19053 4.22843 4.39939 4.58050 4.83330 4.89734 4.95998 5.05483 5.09914 5.11775 5.26249 5.27423 5.29532 5.38873 5.45266 5.53516 5.54412 5.68157 5.71305 5.82510 5.92855 5.97376 6.06384 6.34780 6.46134 7.00873 7.38636 7.42223 7.50391 7.83234 8.09359 8.20485 8.56493 8.89612 9.50405 10.98949 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031327 B = 0.002838 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.575802 B = 9863.275422 C =10247.487641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.025 3.975 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.033 4.033 6 C -0.074 4.074 7 C -0.194 4.194 8 C -0.040 4.040 9 C 0.066 3.934 10 N -0.694 5.694 11 C 0.067 3.933 12 C 0.009 3.991 13 H 0.099 0.901 14 C 0.255 3.745 15 N -0.479 5.479 16 C 0.031 3.969 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.272 1.272 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.341 0.659 36 H 0.050 0.950 37 H 0.076 0.924 38 H 0.026 0.974 39 H 0.037 0.963 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.067 15.526 12.114 21.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.097 4.097 6 C -0.131 4.131 7 C -0.198 4.198 8 C -0.078 4.078 9 C -0.064 4.064 10 N -0.325 5.325 11 C -0.063 4.063 12 C -0.013 4.013 13 H 0.117 0.883 14 C -0.062 4.062 15 N -0.156 5.156 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.530 5.530 21 Si 0.719 3.281 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.159 0.841 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.633 16.800 12.688 22.073 hybrid contribution 1.018 -1.809 -0.596 2.160 sum 7.651 14.991 12.092 20.724 Atomic orbital electron populations 1.20200 0.85900 1.04053 1.03419 1.23497 0.98991 0.88468 1.02416 1.73837 0.89309 1.24026 1.20473 1.84787 1.21658 1.22585 1.68019 1.24279 0.98296 0.83814 1.03265 1.20348 0.89978 0.98570 1.04212 1.20944 0.91490 0.97625 1.09779 1.19871 1.02835 0.87474 0.97640 1.21864 0.99343 0.89745 0.95402 1.60500 1.54228 1.02474 1.15267 1.22067 1.00929 0.94672 0.88618 1.19216 0.86188 0.95086 1.00785 0.88280 1.28802 0.94584 0.91276 0.91509 1.80938 1.12674 1.10346 1.11597 1.19170 0.98832 0.95999 0.86730 1.21142 1.49499 0.93017 0.92847 0.92477 1.24958 0.94955 0.98622 0.95449 1.69933 1.49492 1.36129 0.97468 0.86589 0.78548 0.85220 0.77704 1.20628 1.21106 1.19729 0.90192 0.90602 0.89580 0.89306 0.89937 0.88980 0.89550 0.90560 0.95018 0.90960 0.84110 0.93205 0.90511 0.95566 0.94459 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.39 36.00 0.37 -0.31 16 2 C 0.03 0.28 7.33 -82.10 -0.60 -0.32 16 3 N -0.37 -4.65 12.07 33.42 0.40 -4.24 16 4 O 0.09 1.06 11.20 17.17 0.19 1.26 16 5 C -0.03 -0.30 7.49 -35.30 -0.26 -0.57 16 6 C -0.07 -0.39 10.30 36.01 0.37 -0.02 16 7 C -0.19 -1.90 5.58 -104.42 -0.58 -2.48 16 8 C -0.04 -0.35 5.80 -27.88 -0.16 -0.51 16 9 C 0.07 0.65 5.67 -3.82 -0.02 0.63 16 10 N -0.69 -8.10 6.20 -113.78 -0.71 -8.80 16 11 C 0.07 0.93 5.05 -3.82 -0.02 0.91 16 12 C 0.01 0.16 2.35 -93.40 -0.22 -0.06 16 13 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 14 C 0.26 5.19 13.66 -20.80 -0.28 4.91 16 15 N -0.48 -10.67 18.53 42.11 0.78 -9.89 16 16 C 0.03 0.71 4.42 -27.88 -0.12 0.58 16 17 C -0.53 -13.81 8.60 -34.44 -0.30 -14.10 16 18 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -25.27 13.29 55.43 0.74 -24.54 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.09 0.38 7.43 -51.93 -0.39 0.00 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.55 7.44 -51.93 -0.39 0.16 16 33 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.34 3.43 8.73 -39.29 -0.34 3.08 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -31.64 349.59 -6.42 -38.06 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -6.14 Total: -3.41 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -1.93 Total: -9.74 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 1.21 Total: -47.48 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.19 Total: 1.26 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.64 -6.42 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554551428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.899 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds